mRNA_L-elsbetiae_contig17673.4994.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17673.4994.1
Unique NamemRNA_L-elsbetiae_contig17673.4994.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17673.4994.1 vs. uniprot
Match: D7FYC9_ECTSI (Similar to TAK1 (TGF-beta-activated kinase) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC9_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 2.890e-35
Identity = 60/108 (55.56%), Postives = 81/108 (75.00%), Query Frame = 1
Query:    1 CPAQSSKRNRREPWPSPENFAGKPLTEATDVYSLGMIFYALLRGDKPFGDNKEQFD-LALEGRYRPPMDPSWHKDYAQVVEDMWLQDPKKRPSARQVVARLQDIKEKL 321
            CP ++ KRNR E WPSPEN+AG+PLTE +D+YS+ M+FY+LL G  PFG  +   +  A   + RP +DPSWH+ Y Q+V+DMW +DP +RPSARQ+VARL+ I+E L
Sbjct:  268 CPVRAKKRNRLEAWPSPENYAGQPLTETSDIYSMAMVFYSLLSGTPPFGGPEGLAEAFATRTQPRPLVDPSWHRGYVQIVQDMWNEDPMRRPSARQIVARLEIIEEDL 375          
BLAST of mRNA_L-elsbetiae_contig17673.4994.1 vs. uniprot
Match: A0A6H5K7R0_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R0_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 6.110e-35
Identity = 59/107 (55.14%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    1 CPAQSSKRNRREPWPSPENFAGKPLTEATDVYSLGMIFYALLRGDKPFGDNKEQFDLALEGRYRPPMDPSWHKDYAQVVEDMWLQDPKKRPSARQVVARLQDIKEKL 321
            CPAQS+KRN   PWPSPEN+AG+PLT A D+YSL MIFY+L+ G  P+  N E+   A+  + RP +DPSWHK + +VV+DMW Q P++RPSA +VV RLQ ++ ++
Sbjct:  324 CPAQSAKRNLPTPWPSPENYAGEPLTPANDIYSLAMIFYSLMAGSLPYEGNPERLARAMSSQGRPEIDPSWHKGFMKVVQDMWNQTPQRRPSAERVVVRLQLVQAEI 430          
BLAST of mRNA_L-elsbetiae_contig17673.4994.1 vs. uniprot
Match: D7G7W7_ECTSI (Similar to TAK1 (TGF-beta-activated kinase) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W7_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.240e-34
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    1 CPAQSSKRNRREPWPSPENFAGKPLTEATDVYSLGMIFYALLRGDKPFGDNKEQFDLALEGRYRPPMDPSWHKDYAQVVEDMWLQDPKKRPSARQVVARLQDIKEKL 321
            CPAQS+KRN   PWPSPEN+AG+PLT A+D+YSL MIF++L+    P+  N E    A+  + RP +DPSWHK + +VV+DMW Q P+KRPSA++VV RLQ ++ ++
Sbjct:  182 CPAQSTKRNLPTPWPSPENYAGEPLTPASDIYSLAMIFFSLMAASLPYEGNPELLARAMSRQGRPEIDPSWHKGFMKVVQDMWHQTPQKRPSAKRVVVRLQLLQAEI 288          
BLAST of mRNA_L-elsbetiae_contig17673.4994.1 vs. uniprot
Match: D8LN76_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN76_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.720e-34
Identity = 56/107 (52.34%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 CPAQSSKRNRREPWPSPENFAGKPLTEATDVYSLGMIFYALLRGDKPFGDNKEQFDLALEGRYRPPMDPSWHKDYAQVVEDMWLQDPKKRPSARQVVARLQDIKEKL 321
            CPA ++K  R  PW +PEN AGKPL+E  D+Y++GMI+++L+ G  PF D +E F+ A E + RP +DPSWHK + ++ +DMW QDP++RPSARQVV RL+D++ +L
Sbjct:  141 CPANAAKPARIVPWRAPENVAGKPLSEKVDIYAMGMIYFSLISGGVPFPD-QEAFERAYEAKLRPEIDPSWHKGFTRIFQDMWHQDPERRPSARQVVLRLEDLQREL 246          
BLAST of mRNA_L-elsbetiae_contig17673.4994.1 vs. uniprot
Match: D8LMS6_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS6_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.210e-32
Identity = 60/107 (56.07%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 CPAQSSKRNRREPWPSPENFAGKPLTEATDVYSLGMIFYALLRGDKPFGDNKEQFDLALEGRYRPPMDPSWHKDYAQVVEDMWLQDPKKRPSARQVVARLQDIKEKL 321
            CPA+ SKRN+  P PSPEN+AG+PLT + DVYS+G+IFYAL+ G  PF   K+   L      RP M P WHK Y QV++DMW +DP KRPSA +VV RL+ I E+L
Sbjct:   66 CPARWSKRNKLAPRPSPENYAGQPLTFSVDVYSMGIIFYALIAGRLPF--TKQGVQLVRMSTARPEMAPWWHKGYTQVIQDMWARDPDKRPSAGEVVERLEHILEEL 170          
BLAST of mRNA_L-elsbetiae_contig17673.4994.1 vs. uniprot
Match: D7FNX1_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX1_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 9.030e-30
Identity = 53/107 (49.53%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 CPAQSSKRNRREPWPSPENFAGKPLTEATDVYSLGMIFYALLRGDKPFGDNKEQFDLALEGRYRPPMDPSWHKDYAQVVEDMWLQDPKKRPSARQVVARLQDIKEKL 321
            CP  + +  R  PW +PEN AGKP+TE  D+Y++GMI+Y+L+ G  PF D  E FD A     RP +DPSWHK + ++++DMW +DP +RP ARQVV RLQ ++++L
Sbjct:  259 CPILTGRPARLVPWRAPENIAGKPVTEKVDIYAMGMIYYSLVSGGLPFPD-VETFDEARAAHERPEIDPSWHKGFVEIIQDMWHEDPDERPFARQVVQRLQALQDEL 364          
BLAST of mRNA_L-elsbetiae_contig17673.4994.1 vs. uniprot
Match: A0A6H5LAH0_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH0_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.510e-29
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 1
Query:   37 PWPSPENFAGKPLTEATDVYSLGMIFYALLRGDKPFGDNKEQFDLALEGRYRPPMDPSWHKDYAQVVEDMWLQDPKKRPSARQVVARLQDIKEKLPRF 330
            PW  PEN+AGKPLTE  D+YS+GMIFY+L+ G  P+ D  E    A+    +P +DPSWH+ Y +VVE MWL DP++RPSARQVV RL  I+E++  F
Sbjct:  286 PWRPPENYAGKPLTEKADIYSMGMIFYSLIAGRNPY-DTPEALKTAVSHGSKPEVDPSWHRGYMEVVERMWLDDPERRPSARQVVVRLTAIQEEVGTF 382          
BLAST of mRNA_L-elsbetiae_contig17673.4994.1 vs. uniprot
Match: D8LN73_ECTSI (Serine/threonine/tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN73_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 3.530e-29
Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 1
Query:   40 WPSPENFAGKPLTEATDVYSLGMIFYALLRGDKPFGDNKEQFDLALEGRYRPPMDPSWHKDYAQVVEDMWLQDPKKRPSARQVVARLQDIKEKLPRF 330
            W  PEN+AGKPLTE  D+YS+GMIFY+++ G  P+ D  E    A+    +P +DPSWH+ + +VVE MWL DP++RPSARQVV RL  I+E++ +F
Sbjct:  173 WRPPENYAGKPLTEKADIYSMGMIFYSVIAGRNPY-DTPEALQTAVSHGSKPEVDPSWHRGFMEVVEQMWLDDPERRPSARQVVTRLTAIQEEVGKF 268          
BLAST of mRNA_L-elsbetiae_contig17673.4994.1 vs. uniprot
Match: A0A6H5JU33_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU33_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.470e-26
Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    1 CPAQSSKRNRREPWPSPENFAGK-----------------PLTEATDVYSLGMIFYALLRGDKPFGDNKEQFDLALEGRYRPPMDPSWHKDYAQVVEDMWLQDPKKRPSARQVVARLQDIKEKL 321
            CP  + +  R  PW +PEN AGK                 P+TE  D+Y++GMI+Y+L+ G  PF D  E FD A     RP +DPSWHK + ++++DMW +DP++RP ARQVV RLQ ++++L
Sbjct:  180 CPILTGRPARLVPWKAPENIAGKVFNSGNPLGSTVSTFARPVTEKVDIYAMGMIYYSLISGGLPFPD-VETFDEARAAHDRPEIDPSWHKGFVEIIQDMWHEDPEERPFARQVVQRLQALQDEL 302          
BLAST of mRNA_L-elsbetiae_contig17673.4994.1 vs. uniprot
Match: A0A6H5JFK2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFK2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 5.980e-21
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 CPAQSSKRNRREPWPSPENFAGKPLTEATDVYSLGMIFYALLRGDKPFGDNKEQFDLALEGRYRPPMDPSWHKDYAQVVEDMWLQDPKKRPSARQVVARLQDIKEKLP 324
            CP   SK N    W SPE +AG+ LTE  D+YSLG IF+A+L    PF  + +     L G  RP ++PSWH ++ Q+  DMW +DP++RP+AR+VV RL+ +  +LP
Sbjct:  290 CPFYISKGNGV--WRSPEEYAGEGLTEKLDIYSLGNIFWAMLGRKPPFVRDDDYKGKVLRGE-RPKVNPSWHPEFVQLFTDMWKRDPRERPTAREVVLRLEAMYAELP 394          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17673.4994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYC9_ECTSI2.890e-3555.56Similar to TAK1 (TGF-beta-activated kinase) n=1 Ta... [more]
A0A6H5K7R0_9PHAE6.110e-3555.14Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G7W7_ECTSI1.240e-3454.21Similar to TAK1 (TGF-beta-activated kinase) n=1 Ta... [more]
D8LN76_ECTSI1.720e-3452.34Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
D8LMS6_ECTSI1.210e-3256.07Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FNX1_ECTSI9.030e-3049.53Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6H5LAH0_9PHAE2.510e-2955.10Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LN73_ECTSI3.530e-2952.58Serine/threonine/tyrosine kinase n=1 Tax=Ectocarpu... [more]
A0A6H5JU33_9PHAE1.470e-2642.74Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JFK2_9PHAE5.980e-2145.37Protein kinase domain-containing protein n=1 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17673contigL-elsbetiae_contig17673:725..2245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue5.5e-29
Seed eggNOG ortholog2880.D7FYC9
KEGG koko:K04427
KEGG Pathwayko04010,ko04013,ko04064,ko04140,ko04152,ko04214,ko04310,ko04380,ko04520,ko04620,ko04621,ko04622,ko04624,ko04657,ko04660,ko04668,ko05140,ko05145,ko05162,ko05168,ko05169,ko05418,map04010,map04013,map04064,map04140,map04152,map04214,map04310,map04380,map04520,map04620,map04621,map04622,map04624,map04657,map04660,map04668,map05140,map05145,map05162,map05168,map05169,map05418
KEGG ModuleM00686,M00688,M00689
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.25
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Ec32 ortholog descriptionsimilar to TAK1 (TGF-beta-activated kinase)
Ec32 orthologEc-09_001290.1
Exons3
Model size333
Cds size333
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17673.4994.1prot_L-elsbetiae_contig17673.4994.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17673 725..2245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.7189932-CDS-L-elsbetiae_contig17673:724..7931622815736.7189932-CDS-L-elsbetiae_contig17673:724..793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17673 725..793 +
1691683069.8135288-CDS-L-elsbetiae_contig17673:724..7931691683069.8135288-CDS-L-elsbetiae_contig17673:724..793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17673 725..793 +
1622815736.7316692-CDS-L-elsbetiae_contig17673:1098..12601622815736.7316692-CDS-L-elsbetiae_contig17673:1098..1260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17673 1099..1260 +
1691683069.8243222-CDS-L-elsbetiae_contig17673:1098..12601691683069.8243222-CDS-L-elsbetiae_contig17673:1098..1260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17673 1099..1260 +
1622815736.7445536-CDS-L-elsbetiae_contig17673:2143..22451622815736.7445536-CDS-L-elsbetiae_contig17673:2143..2245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17673 2144..2245 +
1691683069.8328257-CDS-L-elsbetiae_contig17673:2143..22451691683069.8328257-CDS-L-elsbetiae_contig17673:2143..2245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17673 2144..2245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17673.4994.1

>prot_L-elsbetiae_contig17673.4994.1 ID=prot_L-elsbetiae_contig17673.4994.1|Name=mRNA_L-elsbetiae_contig17673.4994.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
CPAQSSKRNRREPWPSPENFAGKPLTEATDVYSLGMIFYALLRGDKPFGD
NKEQFDLALEGRYRPPMDPSWHKDYAQVVEDMWLQDPKKRPSARQVVARL
QDIKEKLPRF*
back to top

mRNA from alignment at L-elsbetiae_contig17673:725..2245+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17673.4994.1 ID=mRNA_L-elsbetiae_contig17673.4994.1|Name=mRNA_L-elsbetiae_contig17673.4994.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1521bp|location=Sequence derived from alignment at L-elsbetiae_contig17673:725..2245+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCCGGCACAATCGAGCAAGCGAAACCGGCGGGAACCCTGGCCGTCGCC TGAAAACTTCGCTGGAAAGGTACCATAGTAGTCTGCCATTTTGTTGTCTA CAAGATGCAGTATAACCATTGCAACTAGTCTATGAATTCACGCCGTCATA ATGAGGCTTTCAAAGAAAATAAGCAACATCTCAATCACTGCAGCCTTTTT TGCTGCACTCGCGAGCCTTTCCGAGGTGGCAGGCTTCCGAAGGTTCTGGT TAGAAATCTCGAACTGCGCCCCCGAAATGCAATAAAGTGACGATCGTGCT GCATTTATTGGATAGATTGGTGCTACTAGCAATCGTGAATTTGACTGCCT ACACCCCATACCCTGATCCTTCAGCCTCTGACGGAGGCGACGGACGTCTA CAGCCTGGGTATGATATTCTACGCGCTGCTACGCGGGGACAAGCCATTCG GCGACAACAAGGAGCAGTTTGATCTTGCTCTTGAAGGCAGATATAGGCCT CCGATGGACCCGTCGTGGCATAAAGACTACGCACAGGTTGGTTGATTGGT GGCTTTCAGAGGTGCATAAGAATGCTTATCTATGGTGTTTGGTCCCTATG TGTGCCCCACCACCTCTCATCCTCTAGTAGTATTGATAATAAGGTAGGGG GAGACTAAATACCTTTCGTCAGGCCTAATCTTCTCAAGGTGGTCTACATA GATAGTTGGTATCCCTAAGCAATGCCACGATAGAGGGGGTACTTTTTGGC CCTCAGGTTGCAAGATCACGGAGCTTGTCGGCCGACAAGCCTTGCAGGGG GGTGCCCCTATATCGATACACGGGGCTCCTTTGCCAGATTTGAAAAGTGC TACGCAAGTGTTACTCCTCGTCGATTTGCTTGCATCTCTTTGGTAAACCC AAAACAATCGTGGGGGGCACTTTTTACTCCCTAGACCGTATAGGACTCTA CGCTTGTCGGCCGACAAGCTTTCAATTTGGGGTACCCCCTCTATCGTGGC ATTGGTCCCCTGCACATCTTCTAGCAGGTAGGTTACGGGTTCGATTCCCG GCGGAAACGACTTTTTCTCGCGAAAAGCGAGTTTTTCCCTTGCTTTCGTC CCGGTCAGTGGAAAATGCTTAGCGTGTGTACACAAACTTCGACCTCGCCC TCAACGAGGACAATAAGGGACGCGGCTGAACCGTTTTCGCGACAAAATCT TAGGCAAGCACCGCAGAAGGGGCTTGGGGAAAGGATCCCTTCTGTGTGAC CACGGTTTAGTACTCTGGCAAGATGCCCTCCTCGTGGCAAGGAGCCTATT GAGCACGGGAAATAAATGTGAAGAAGAAGAAGAAGAACCTTCTCAAGAGA TGCGCTCGATACGCTTCGAAAAAACTCTCGGTTTTCTGACACTGTGACTT GTGTCTACTCTGGGTGCAGGTCGTGGAAGATATGTGGCTCCAGGATCCCA AGAAAAGGCCCTCCGCCAGACAAGTGGTCGCCCGCTTGCAGGACATCAAG GAAAAACTCCCAAGATTTTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17673:725..2245+

>mRNA_L-elsbetiae_contig17673.4994.1 ID=mRNA_L-elsbetiae_contig17673.4994.1|Name=mRNA_L-elsbetiae_contig17673.4994.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig17673:725..2245+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCCGGCACAATCGAGCAAGCGAAACCGGCGGGAACCCTGGCCGTCGCC
TGAAAACTTCGCTGGAAAGTGCCCGGCACAATCGAGCAAGCGAAACCGGC
GGGAACCCTGGCCGTCGCCTGAAAACTTCGCTGGAAAGCCTCTGACGGAG
GCGACGGACGTCTACAGCCTGGGTATGATATTCTACGCGCTGCTACGCGG
GGACAAGCCATTCGGCGACAACAAGGAGCAGTTTGATCTTGCTCTTGAAG
GCAGATATAGGCCTCCGATGGACCCGTCGTGGCATAAAGACTACGCACAG
CCTCTGACGGAGGCGACGGACGTCTACAGCCTGGGTATGATATTCTACGC
GCTGCTACGCGGGGACAAGCCATTCGGCGACAACAAGGAGCAGTTTGATC
TTGCTCTTGAAGGCAGATATAGGCCTCCGATGGACCCGTCGTGGCATAAA
GACTACGCACAGGTCGTGGAAGATATGTGGCTCCAGGATCCCAAGAAAAG
GCCCTCCGCCAGACAAGTGGTCGCCCGCTTGCAGGACATCAAGGAAAAAC
TCCCAAGATTTTAAGTCGTGGAAGATATGTGGCTCCAGGATCCCAAGAAA
AGGCCCTCCGCCAGACAAGTGGTCGCCCGCTTGCAGGACATCAAGGAAAA
ACTCCCAAGATTTTAA
back to top