mRNA_L-elsbetiae_contig17652.4985.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17652.4985.1
Unique NamemRNA_L-elsbetiae_contig17652.4985.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17652.4985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17652contigL-elsbetiae_contig17652:2853..3206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size356
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.5751173-CDS-L-elsbetiae_contig17652:2852..32061622815735.5751173-CDS-L-elsbetiae_contig17652:2852..3206Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17652 2853..3206 +
1691683069.2002432-CDS-L-elsbetiae_contig17652:2852..32061691683069.2002432-CDS-L-elsbetiae_contig17652:2852..3206Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17652 2853..3206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17652.4985.1prot_L-elsbetiae_contig17652.4985.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17652 2853..3206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17652.4985.1

>prot_L-elsbetiae_contig17652.4985.1 ID=prot_L-elsbetiae_contig17652.4985.1|Name=mRNA_L-elsbetiae_contig17652.4985.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
QLGGRKGGRYCRWRNTSGRIAEGSIVAGSTSEDSRGQGCFWCNTNWEESR
RGLWGGQQGGIALLAKYHLARQQGGSGWQPEGCFAGAVPVGRTARAQFQL
GDENRRGMGRVAGRNDVA
back to top

mRNA from alignment at L-elsbetiae_contig17652:2853..3206+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17652.4985.1 ID=mRNA_L-elsbetiae_contig17652.4985.1|Name=mRNA_L-elsbetiae_contig17652.4985.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig17652:2853..3206+ (Laminarionema elsbetiae ELsaHSoW15)
CAGTTGGGAGGAAGGAAGGGGGGGCGGTATTGTCGATGGCGCAACACCAG
TGGGAGAATAGCAGAGGGCAGCATCGTCGCGGGCAGTACCAGTGAGGACA
GTAGAGGGCAAGGATGTTTTTGGTGCAACACCAACTGGGAGGAGAGCAGG
AGAGGACTGTGGGGAGGACAGCAGGGAGGGATAGCGTTGCTGGCGAAATA
CCATCTGGCAAGACAACAGGGGGGAAGTGGGTGGCAGCCGGAAGGATGTT
TTGCTGGCGCGGTACCAGTGGGGAGGACAGCGCGGGCGCAATTCCAGCTG
GGAGATGAGAACAGGAGAGGGATGGGGAGGGTAGCAGGGAGGAACGATGT
CGCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17652:2853..3206+

>mRNA_L-elsbetiae_contig17652.4985.1 ID=mRNA_L-elsbetiae_contig17652.4985.1|Name=mRNA_L-elsbetiae_contig17652.4985.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig17652:2853..3206+ (Laminarionema elsbetiae ELsaHSoW15)
CAGTTGGGAGGAAGGAAGGGGGGGCGGTATTGTCGATGGCGCAACACCAG
TGGGAGAATAGCAGAGGGCAGCATCGTCGCGGGCAGTACCAGTGAGGACA
GTAGAGGGCAAGGATGTTTTTGGTGCAACACCAACTGGGAGGAGAGCAGG
AGAGGACTGTGGGGAGGACAGCAGGGAGGGATAGCGTTGCTGGCGAAATA
CCATCTGGCAAGACAACAGGGGGGAAGTGGGTGGCAGCCGGAAGGATGTT
TTGCTGGCGCGGTACCAGTGGGGAGGACAGCGCGGGCGCAATTCCAGCTG
GGAGATGAGAACAGGAGAGGGATGGGGAGGGTAGCAGGGAGGAACGATGT
CGCTCAGTTGGGAGGAAGGAAGGGGGGGCGGTATTGTCGATGGCGCAACA
CCAGTGGGAGAATAGCAGAGGGCAGCATCGTCGCGGGCAGTACCAGTGAG
GACAGTAGAGGGCAAGGATGTTTTTGGTGCAACACCAACTGGGAGGAGAG
CAGGAGAGGACTGTGGGGAGGACAGCAGGGAGGGATAGCGTTGCTGGCGA
AATACCATCTGGCAAGACAACAGGGGGGAAGTGGGTGGCAGCCGGAAGGA
TGTTTTGCTGGCGCGGTACCAGTGGGGAGGACAGCGCGGGCGCAATTCCA
GCTGGGAGATGAGAACAGGAGAGGGATGGGGAGGGTAGCAGGGAGGAACG
ATGTCGCT
back to top