mRNA_L-elsbetiae_contig17644.4982.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17644.4982.1
Unique NamemRNA_L-elsbetiae_contig17644.4982.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig17644.4982.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.550e-36
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 2 
Query:   35 GLSRSLIAPLWAHDLRDGVSGLDVLSTELLSRRATAYEDVLKMPSRLPLSIPDPAQVDKSLNLMPQVLYRLTRLRKTLR 271
            G+SRSLIAPLWAHDLRDG+ GLDVLSTELLSRRAT  EDVLKMPS+LPL IPDP QVDKSLNLMPQVLYRLTRLRKTLR
Sbjct: 1451 GVSRSLIAPLWAHDLRDGLPGLDVLSTELLSRRATPAEDVLKMPSKLPLCIPDPTQVDKSLNLMPQVLYRLTRLRKTLR 1529
[Close]
BLAST of mRNA_L-elsbetiae_contig17644.4982.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.050e-20
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 2 
Query:   35 GLSRSLIAPLWAHDLRDGVSGLDVLSTELLSRRATAYEDVLKMPSRLPLSIPDP 196
            G+SRSLIAPLWAHDLRD + GLDVLSTELLSRRAT  EDVLKMPS+LPL IPDP
Sbjct: 1839 GVSRSLIAPLWAHDLRDDLPGLDVLSTELLSRRATPAEDVLKMPSKLPLCIPDP 1892
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17644.4982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTP0_ECTSI3.550e-3689.87Similar to E1a binding protein P400 (Partial) (Fra... [more]
A0A6H5KKD6_9PHAE3.050e-2085.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17644contigL-elsbetiae_contig17644:343..1407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size282
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17644.4982.1prot_L-elsbetiae_contig17644.4982.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17644 343..1377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.2663376-CDS-L-elsbetiae_contig17644:342..4221622815735.2663376-CDS-L-elsbetiae_contig17644:342..422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17644 343..422 -
1691683068.962145-CDS-L-elsbetiae_contig17644:342..4221691683068.962145-CDS-L-elsbetiae_contig17644:342..422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17644 343..422 -
1622815735.2773952-CDS-L-elsbetiae_contig17644:1050..11691622815735.2773952-CDS-L-elsbetiae_contig17644:1050..1169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17644 1051..1169 -
1691683068.9806485-CDS-L-elsbetiae_contig17644:1050..11691691683068.9806485-CDS-L-elsbetiae_contig17644:1050..1169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17644 1051..1169 -
1622815735.287623-CDS-L-elsbetiae_contig17644:1324..13771622815735.287623-CDS-L-elsbetiae_contig17644:1324..1377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17644 1325..1377 -
1691683068.9974413-CDS-L-elsbetiae_contig17644:1324..13771691683068.9974413-CDS-L-elsbetiae_contig17644:1324..1377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17644 1325..1377 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815735.2969227-UTR-L-elsbetiae_contig17644:1377..14071622815735.2969227-UTR-L-elsbetiae_contig17644:1377..1407Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17644 1378..1407 -
1691683069.0063987-UTR-L-elsbetiae_contig17644:1377..14071691683069.0063987-UTR-L-elsbetiae_contig17644:1377..1407Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17644 1378..1407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17644.4982.1

>prot_L-elsbetiae_contig17644.4982.1 ID=prot_L-elsbetiae_contig17644.4982.1|Name=mRNA_L-elsbetiae_contig17644.4982.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
MGVVKKSHRPTLGARSERRGFRAGCAVDGAAVQESDGVRGRAQDAQQAPA
LYPRSGTGGQEFESHASGPLQAHQTTEDTQVRT*
back to top

mRNA from alignment at L-elsbetiae_contig17644:343..1407-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17644.4982.1 ID=mRNA_L-elsbetiae_contig17644.4982.1|Name=mRNA_L-elsbetiae_contig17644.4982.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1065bp|location=Sequence derived from alignment at L-elsbetiae_contig17644:343..1407- (Laminarionema elsbetiae ELsaHSoW15)
TGGAAGAGGAGGAGGGTTGCCTGGAAATCGATGGGGGTTGTCAAGAAGTC
TCATCGCCCCACTCTGGGCGCACGATCTGAGAGGTGGGTTGTGTGGTGTG
TGTGTGTCTGCGCGCGGCTGCCTGTTTGTGTTTGGTATGTACATACTCCG
GAGCGCACCATTCAACGCTTCGTTTTGTTGTCATCTGTTCTTTCCCCGGG
ACATGCCCCCCCCTACTCTCTGTGCCTTATGTATGTAGACGGGGTTTCCG
GGCTGGATGTGCTGTCGACGGAGCTGCTGTCCAGGAGAGCGACGGCGTAC
GAGGACGTGCTCAAGATGCCCAGCAGGCTCCCGCTCTCTATCCCCGATCC
GGCACAGGTGACGCGGAGTGACGTGCAGTAGTGTAAATATAGTGACGCGA
AGTGACGTGAAGTGACGCGAAGCGACGTGTAAGTGACTAGAAAGTGCCGT
GGAAGTGACGTGTAGTAACGTGGAGTGACGTGGAGTAACGCGAGGTGACT
TGGAGTAACGTGAGGTGACTTGGAGTAACGTGAGGTGACTTGGAGGGAGG
GACCTGAAATTATGTATCCGAAATCAAAATCTCCCTCGCGCTCCTCGCGA
GCGAGCACACGGCAGACGCCTTCAGCTTGCGAGAGCTCAAATAGACATTC
ACGAGCGTACCGCCTCGCAGTAATCACCGAGAGAGCTCTCAGCCGCGAGC
ACAGCAGACGCCTCCTAGCTGTTACGGAGAGTTCAAGAGATTTGCGAGTT
TATGTCCTTTTTCGCCATTGATTGATACTTCGAGCTTATTTTTGTTTTAT
TCGACTTGAGCCAAAAGCTGAAGAAGAAAAGCAAAGCCTGCCTGTACATT
TATAGAGGCAACCAACGCCCCCGGTGTGGTCGTGTGTCTCTTCGGTGCGG
TCTCTGGTTCTCCTGCTCAGGCTTTGTTGGTGACACTTGTTTTCTCCCCC
CCCCCCCCCCCCCCTCTCTCTCTCTCTCTCTGCAGGTGGACAAGAGTTTG
AATCTCATGCCTCAGGTCCTCTACAGGCTCACCAGACTACGGAAGACACT
CAGGTACGCACGTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17644:343..1407-

>mRNA_L-elsbetiae_contig17644.4982.1 ID=mRNA_L-elsbetiae_contig17644.4982.1|Name=mRNA_L-elsbetiae_contig17644.4982.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig17644:343..1407- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGTTGTCAAGAAGTCTCATCGCCCCACTCTGGGCGCACGATCTGA
GAGATGGGGGTTGTCAAGAAGTCTCATCGCCCCACTCTGGGCGCACGATC
TGAGAGACGGGGTTTCCGGGCTGGATGTGCTGTCGACGGAGCTGCTGTCC
AGGAGAGCGACGGCGTACGAGGACGTGCTCAAGATGCCCAGCAGGCTCCC
GCTCTCTATCCCCGATCCGGCACAGACGGGGTTTCCGGGCTGGATGTGCT
GTCGACGGAGCTGCTGTCCAGGAGAGCGACGGCGTACGAGGACGTGCTCA
AGATGCCCAGCAGGCTCCCGCTCTCTATCCCCGATCCGGCACAGGTGGAC
AAGAGTTTGAATCTCATGCCTCAGGTCCTCTACAGGCTCACCAGACTACG
GAAGACACTCAGGTACGCACGTAAGTGGACAAGAGTTTGAATCTCATGCC
TCAGGTCCTCTACAGGCTCACCAGACTACGGAAGACACTCAGGTACGCAC
GTAA
back to top