mRNA_L-elsbetiae_contig17586.4958.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig17586.4958.1
Unique Name	mRNA_L-elsbetiae_contig17586.4958.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig17586.4958.1 vs. uniprot
Match: A0A6H5JL29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL29_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 3.630e-58
Identity = 99/123 (80.49%), Postives = 105/123 (85.37%), Query Frame = 1

Query:   10 GSATSDVTAAHTSEGRKRQHYARPGQASFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRDEGSMAQKGVFKERLLQVISVATQVAISRRVQRYKPSLRGRQEEEGRKPGPTSNTST 378
            GSATSD T A  SE RKRQHYARPG  SFDE SFKLTTLAVESFGRLGEEGYEFIDELATHA GGRD G+MA KGVFKERLLQ++SVATQVAISRRVQRYK +LRGRQ+ E R+   TSN ST
Sbjct:   34 GSATSDGTVAQASEARKRQHYARPGHVSFDEHSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQST 156

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BLAST of mRNA_L-elsbetiae_contig17586.4958.1 vs. uniprot
Match: A0A6H5JKF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF1_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.330e-56
Identity = 99/123 (80.49%), Postives = 106/123 (86.18%), Query Frame = 1

Query:   10 GSATSDVTAAHTSEGRKRQHYARPGQASFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRDEGSMAQKGVFKERLLQVISVATQVAISRRVQRYKPSLRGRQEEEGRKPGPTSNTST 378
            GSATSD TAA  SE RKRQHYARPG  +FDERSFKLTTLAVESFGRLGEEGYEFIDELATHA GGRD G+MA KGVFKERL Q++SVATQVAISRRVQRYK +LRGRQ+ E R+   TSN ST
Sbjct:  152 GSATSDGTAAPASESRKRQHYARPGHVAFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLFQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQST 274

[Close]

BLAST of mRNA_L-elsbetiae_contig17586.4958.1 vs. uniprot
Match: A0A6H5KAD2_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD2_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.350e-56
Identity = 98/123 (79.67%), Postives = 105/123 (85.37%), Query Frame = 1

Query:   10 GSATSDVTAAHTSEGRKRQHYARPGQASFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRDEGSMAQKGVFKERLLQVISVATQVAISRRVQRYKPSLRGRQEEEGRKPGPTSNTST 378
            GSATSD  AA  SE RKRQHYARPG  SFDER FKLTTLAVESFGRLGEEGYEFIDELATHA GGRD G+MA KGVFKERLLQ++SVATQVAISRRVQRYK +LRGRQ+ E R+   TS+ ST
Sbjct:   71 GSATSDGIAAQASEARKRQHYARPGHVSFDERRFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQST 193

[Close]

BLAST of mRNA_L-elsbetiae_contig17586.4958.1 vs. uniprot
Match: A0A6H5JZN4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN4_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 2.280e-56
Identity = 97/123 (78.86%), Postives = 105/123 (85.37%), Query Frame = 1

Query:   10 GSATSDVTAAHTSEGRKRQHYARPGQASFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRDEGSMAQKGVFKERLLQVISVATQVAISRRVQRYKPSLRGRQEEEGRKPGPTSNTST 378
            GSATSD  AA  SE RKRQHYARPG  SFDE S+KLTTLAVESFGRLGEEGYEFIDELATHA GGRD G+MA KGVFKERLLQ++SVATQVAISRRVQRYK +LRGRQ+ E R+   TS+ ST
Sbjct:   32 GSATSDGIAAQASEARKRQHYARPGHVSFDEGSYKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQST 154

[Close]

BLAST of mRNA_L-elsbetiae_contig17586.4958.1 vs. uniprot
Match: A0A6H5JPW7_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW7_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 6.320e-56
Identity = 99/123 (80.49%), Postives = 106/123 (86.18%), Query Frame = 1

Query:   10 GSATSDVTAAHTSEGRKRQHYARPGQASFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRDEGSMAQKGVFKERLLQVISVATQVAISRRVQRYKPSLRGRQEEEGRKPGPTSNTST 378
            GSATSD  AA  SE RKRQHYARPG  SFDERSFKLTTLAVESFGRLGEEGYEFIDELATHA GGRD G+MA KGVFKERLLQ++SVATQVAISRRVQRYK +LRGRQ+ E R+   TS+ ST
Sbjct:  183 GSATSDGIAAQASEARKRQHYARPGNVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQST 305

[Close]

BLAST of mRNA_L-elsbetiae_contig17586.4958.1 vs. uniprot
Match: A0A6H5JU10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU10_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 7.160e-56
Identity = 95/120 (79.17%), Postives = 104/120 (86.67%), Query Frame = 1

Query:   19 TSDVTAAHTSEGRKRQHYARPGQASFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRDEGSMAQKGVFKERLLQVISVATQVAISRRVQRYKPSLRGRQEEEGRKPGPTSNTST 378
            +SD TAA  SE RKRQHYARPG  SFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRD G+M+ KGVFKERL +++SVATQVAISRRVQRYK +LRGRQ+ E R+   TSN ST
Sbjct:   13 SSDGTAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRDGGTMSLKGVFKERLPRIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQST 132

[Close]

BLAST of mRNA_L-elsbetiae_contig17586.4958.1 vs. uniprot
Match: A0A6H5K198_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K198_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 2.340e-55
Identity = 99/123 (80.49%), Postives = 106/123 (86.18%), Query Frame = 1

Query:   10 GSATSDVTAAHTSEGRKRQHYARPGQASFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRDEGSMAQKGVFKERLLQVISVATQVAISRRVQRYKPSLRGRQEEEGRKPGPTSNTST 378
            GSATSD  AA  SE RKRQHYARPG  SFDERSFKLTTLAVESFGRLGEEGYEFIDELATHA GGRD G+MA KGVFKERLLQ++SVATQVAISRRVQRYK +LRGRQ+ E R+   TS+ ST
Sbjct:  206 GSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRLTSDQST 328

[Close]

BLAST of mRNA_L-elsbetiae_contig17586.4958.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 4.590e-55
Identity = 99/123 (80.49%), Postives = 106/123 (86.18%), Query Frame = 1

Query:   10 GSATSDVTAAHTSEGRKRQHYARPGQASFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRDEGSMAQKGVFKERLLQVISVATQVAISRRVQRYKPSLRGRQEEEGRKPGPTSNTST 378
            GSATSD  AA  SE RKRQHYARPG  SFDERSFKLTTLAVESFGRLGEEGYEFIDELATHA GGRD G+MA KGVFKERLLQ++SVATQVAISRRVQRYK +LRGRQ+ E R+   TS+ ST
Sbjct:  260 GSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQST 382

[Close]

BLAST of mRNA_L-elsbetiae_contig17586.4958.1 vs. uniprot
Match: A0A6H5KEX1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX1_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 6.880e-55
Identity = 99/123 (80.49%), Postives = 106/123 (86.18%), Query Frame = 1

Query:   10 GSATSDVTAAHTSEGRKRQHYARPGQASFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRDEGSMAQKGVFKERLLQVISVATQVAISRRVQRYKPSLRGRQEEEGRKPGPTSNTST 378
            GSATSD  AA  SE RKRQHYARPG  SFDERSFKLTTLAVESFGRLGEEGYEFIDELATHA GGRD G+MA KGVFKERLLQ++SVATQVAISRRVQRYK +LRGRQ+ E R+   TS+ ST
Sbjct:  183 GSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQST 305

[Close]

BLAST of mRNA_L-elsbetiae_contig17586.4958.1 vs. uniprot
Match: A0A6H5K2J3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J3_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 2.630e-54
Identity = 92/114 (80.70%), Postives = 99/114 (86.84%), Query Frame = 1

Query:   37 AHTSEGRKRQHYARPGQASFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRDEGSMAQKGVFKERLLQVISVATQVAISRRVQRYKPSLRGRQEEEGRKPGPTSNTST 378
            A  SE RKRQHYARPG  SFDERSFKLTTLAVESFGRLGEEGYEFIDELATHA GGRD G+MA KGVFKERLLQ++SVATQVAISRRVQRYK +LRGRQ+ E R+   TS+ ST
Sbjct:    3 AQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQST 116

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig17586.4958.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig17586.4958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JL29_9PHAE	3.630e-58	80.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JKF1_9PHAE	1.330e-56	80.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAD2_9PHAE	1.350e-56	79.67	Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZN4_9PHAE	2.280e-56	78.86	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JPW7_9PHAE	6.320e-56	80.49	Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JU10_9PHAE	7.160e-56	79.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K198_9PHAE	2.340e-55	80.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDZ4_9PHAE	4.590e-55	80.49	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KEX1_9PHAE	6.880e-55	80.49	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5K2J3_9PHAE	2.630e-54	80.70	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig17586	contig	L-elsbetiae_contig17586:1808..2186 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	380
Cds size	378
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815732.1716692-CDS-L-elsbetiae_contig17586:1807..2185	1622815732.1716692-CDS-L-elsbetiae_contig17586:1807..2185	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig17586 1808..2185 +
1691683066.6792178-CDS-L-elsbetiae_contig17586:1807..2185	1691683066.6792178-CDS-L-elsbetiae_contig17586:1807..2185	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig17586 1808..2185 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig17586.4958.1	prot_L-elsbetiae_contig17586.4958.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig17586 1808..2185 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig17586:1808..2186+
coding sequence from alignment at L-elsbetiae_contig17586:1808..2186+

protein sequence of mRNA_L-elsbetiae_contig17586.4958.1

>prot_L-elsbetiae_contig17586.4958.1 ID=prot_L-elsbetiae_contig17586.4958.1|Name=mRNA_L-elsbetiae_contig17586.4958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
YTCGSATSDVTAAHTSEGRKRQHYARPGQASFDERSFKLTTLAVESFGRL
GEEGYEFIDELATHAAGGRDEGSMAQKGVFKERLLQVISVATQVAISRRV
QRYKPSLRGRQEEEGRKPGPTSNTST

mRNA from alignment at L-elsbetiae_contig17586:1808..2186+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig17586.4958.1 ID=mRNA_L-elsbetiae_contig17586.4958.1|Name=mRNA_L-elsbetiae_contig17586.4958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=379bp|location=Sequence derived from alignment at L-elsbetiae_contig17586:1808..2186+ (Laminarionema elsbetiae ELsaHSoW15)
TACACTTGCGGCAGCGCAACCAGCGATGTAACTGCAGCCCACACCTCCGA
GGGGCGAAAGCGTCAGCACTACGCTCGTCCGGGACAAGCGTCTTTCGACG
AGCGCAGCTTTAAACTTACCACCTTAGCGGTGGAAAGCTTTGGCCGCCTT
GGAGAGGAGGGATACGAGTTCATCGACGAGCTAGCGACACATGCCGCGGG
AGGAAGAGATGAGGGATCAATGGCGCAGAAAGGGGTCTTCAAGGAACGAC
TGCTTCAGGTCATTTCGGTGGCTACACAGGTGGCCATATCGCGGAGAGTT
CAGCGGTACAAGCCGTCATTGCGCGGACGTCAAGAAGAGGAAGGAAGAAA
ACCAGGACCAACATCGAACACATCGACAC

Coding sequence (CDS) from alignment at L-elsbetiae_contig17586:1808..2186+

>mRNA_L-elsbetiae_contig17586.4958.1 ID=mRNA_L-elsbetiae_contig17586.4958.1|Name=mRNA_L-elsbetiae_contig17586.4958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig17586:1808..2186+ (Laminarionema elsbetiae ELsaHSoW15)
TACACTTGCGGCAGCGCAACCAGCGATGTAACTGCAGCCCACACCTCCGA
GGGGCGAAAGCGTCAGCACTACGCTCGTCCGGGACAAGCGTCTTTCGACG
AGCGCAGCTTTAAACTTACCACCTTAGCGGTGGAAAGCTTTGGCCGCCTT
GGAGAGGAGGGATACGAGTTCATCGACGAGCTAGCGACACATGCCGCGGG
AGGAAGAGATGAGGGATCAATGGCGCAGAAAGGGGTCTTCAAGGAACGAC
TGCTTCAGGTCATTTCGGTGGCTACACAGGTGGCCATATCGCGGAGAGTT
CAGCGGTACAAGCCGTCATTGCGCGGACGTCAAGAAGAGGAAGGAAGAAA
ACCAGGACCAACATCGAACACATCGACATACACTTGCGGCAGCGCAACCA
GCGATGTAACTGCAGCCCACACCTCCGAGGGGCGAAAGCGTCAGCACTAC
GCTCGTCCGGGACAAGCGTCTTTCGACGAGCGCAGCTTTAAACTTACCAC
CTTAGCGGTGGAAAGCTTTGGCCGCCTTGGAGAGGAGGGATACGAGTTCA
TCGACGAGCTAGCGACACATGCCGCGGGAGGAAGAGATGAGGGATCAATG
GCGCAGAAAGGGGTCTTCAAGGAACGACTGCTTCAGGTCATTTCGGTGGC
TACACAGGTGGCCATATCGCGGAGAGTTCAGCGGTACAAGCCGTCATTGC
GCGGACGTCAAGAAGAGGAAGGAAGAAAACCAGGACCAACATCGAACACA
TCGACA