mRNA_L-elsbetiae_contig17513.4929.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17513.4929.1
Unique NamemRNA_L-elsbetiae_contig17513.4929.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17513.4929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17513contigL-elsbetiae_contig17513:2206..2694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.7250235-CDS-L-elsbetiae_contig17513:2205..26941622815729.7250235-CDS-L-elsbetiae_contig17513:2205..2694Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17513 2206..2694 +
1691683065.0265555-CDS-L-elsbetiae_contig17513:2205..26941691683065.0265555-CDS-L-elsbetiae_contig17513:2205..2694Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17513 2206..2694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17513.4929.1prot_L-elsbetiae_contig17513.4929.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17513 2206..2694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17513.4929.1

>prot_L-elsbetiae_contig17513.4929.1 ID=prot_L-elsbetiae_contig17513.4929.1|Name=mRNA_L-elsbetiae_contig17513.4929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
LSASTTYGGSSRRTMFTHFVRVGIPKVAFTYIVRWLDRQLMEFDNRPTES
DGYYWTSCGLGNKKHKTVVHYHDQGGVPRTTMDLKSFVQKCGYKSLRCRA
MLSMSLGFKAKVGKVNANSEYSSRKGSLSMKIHDLVVMGYGKWSGPVQML
GVGLDEPQLPLDK
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mRNA from alignment at L-elsbetiae_contig17513:2206..2694+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17513.4929.1 ID=mRNA_L-elsbetiae_contig17513.4929.1|Name=mRNA_L-elsbetiae_contig17513.4929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=489bp|location=Sequence derived from alignment at L-elsbetiae_contig17513:2206..2694+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAGCGCGTCGACGACGTACGGCGGTTCTAGCCGTAGGACCATGTTCAC
CCACTTCGTCCGCGTCGGTATCCCCAAGGTCGCCTTCACCTACATCGTGC
GGTGGCTCGACCGACAGCTGATGGAGTTCGACAACAGGCCCACTGAGAGC
GACGGGTACTACTGGACCAGCTGTGGTCTGGGGAACAAGAAACACAAGAC
TGTGGTGCACTACCATGACCAAGGCGGCGTCCCTAGGACCACGATGGACC
TGAAGAGCTTCGTCCAGAAGTGTGGCTACAAGTCCCTTCGGTGCAGGGCG
ATGCTCTCGATGTCACTGGGCTTCAAGGCCAAGGTTGGTAAGGTCAATGC
CAATTCGGAGTATTCGTCTAGGAAGGGGAGTCTGTCCATGAAGATCCATG
ATCTAGTGGTGATGGGCTACGGCAAGTGGTCTGGCCCGGTTCAGATGCTC
GGTGTCGGTTTGGATGAGCCCCAGCTCCCCTTGGACAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17513:2206..2694+

>mRNA_L-elsbetiae_contig17513.4929.1 ID=mRNA_L-elsbetiae_contig17513.4929.1|Name=mRNA_L-elsbetiae_contig17513.4929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig17513:2206..2694+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAGCGCGTCGACGACGTACGGCGGTTCTAGCCGTAGGACCATGTTCAC
CCACTTCGTCCGCGTCGGTATCCCCAAGGTCGCCTTCACCTACATCGTGC
GGTGGCTCGACCGACAGCTGATGGAGTTCGACAACAGGCCCACTGAGAGC
GACGGGTACTACTGGACCAGCTGTGGTCTGGGGAACAAGAAACACAAGAC
TGTGGTGCACTACCATGACCAAGGCGGCGTCCCTAGGACCACGATGGACC
TGAAGAGCTTCGTCCAGAAGTGTGGCTACAAGTCCCTTCGGTGCAGGGCG
ATGCTCTCGATGTCACTGGGCTTCAAGGCCAAGGTTGGTAAGGTCAATGC
CAATTCGGAGTATTCGTCTAGGAAGGGGAGTCTGTCCATGAAGATCCATG
ATCTAGTGGTGATGGGCTACGGCAAGTGGTCTGGCCCGGTTCAGATGCTC
GGTGTCGGTTTGGATGAGCCCCAGCTCCCCTTGGACAAGCTCAGCGCGTC
GACGACGTACGGCGGTTCTAGCCGTAGGACCATGTTCACCCACTTCGTCC
GCGTCGGTATCCCCAAGGTCGCCTTCACCTACATCGTGCGGTGGCTCGAC
CGACAGCTGATGGAGTTCGACAACAGGCCCACTGAGAGCGACGGGTACTA
CTGGACCAGCTGTGGTCTGGGGAACAAGAAACACAAGACTGTGGTGCACT
ACCATGACCAAGGCGGCGTCCCTAGGACCACGATGGACCTGAAGAGCTTC
GTCCAGAAGTGTGGCTACAAGTCCCTTCGGTGCAGGGCGATGCTCTCGAT
GTCACTGGGCTTCAAGGCCAAGGTTGGTAAGGTCAATGCCAATTCGGAGT
ATTCGTCTAGGAAGGGGAGTCTGTCCATGAAGATCCATGATCTAGTGGTG
ATGGGCTACGGCAAGTGGTCTGGCCCGGTTCAGATGCTCGGTGTCGGTTT
GGATGAGCCCCAGCTCCCCTTGGACAAG
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