mRNA_L-elsbetiae_contig1749.4917.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1749.4917.1
Unique NamemRNA_L-elsbetiae_contig1749.4917.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1749.4917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1749contigL-elsbetiae_contig1749:15575..17123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size250
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1749.4917.1prot_L-elsbetiae_contig1749.4917.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1749 15575..17123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.4927976-CDS-L-elsbetiae_contig1749:15574..156141622815728.4927976-CDS-L-elsbetiae_contig1749:15574..15614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1749 15575..15614 -
1691683064.2203162-CDS-L-elsbetiae_contig1749:15574..156141691683064.2203162-CDS-L-elsbetiae_contig1749:15574..15614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1749 15575..15614 -
1622815728.507134-CDS-L-elsbetiae_contig1749:16435..165411622815728.507134-CDS-L-elsbetiae_contig1749:16435..16541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1749 16436..16541 -
1691683064.235754-CDS-L-elsbetiae_contig1749:16435..165411691683064.235754-CDS-L-elsbetiae_contig1749:16435..16541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1749 16436..16541 -
1622815728.5182385-CDS-L-elsbetiae_contig1749:17020..171231622815728.5182385-CDS-L-elsbetiae_contig1749:17020..17123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1749 17021..17123 -
1691683064.2460163-CDS-L-elsbetiae_contig1749:17020..171231691683064.2460163-CDS-L-elsbetiae_contig1749:17020..17123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1749 17021..17123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1749.4917.1

>prot_L-elsbetiae_contig1749.4917.1 ID=prot_L-elsbetiae_contig1749.4917.1|Name=mRNA_L-elsbetiae_contig1749.4917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
MADSDGSLGGSYDYQYYADLVESLVPPETDATDYGIAMFLLVACSVLIVV
FASALVFFFLKRNVFEIRARSPLLVMLSGACIM
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mRNA from alignment at L-elsbetiae_contig1749:15575..17123-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1749.4917.1 ID=mRNA_L-elsbetiae_contig1749.4917.1|Name=mRNA_L-elsbetiae_contig1749.4917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1549bp|location=Sequence derived from alignment at L-elsbetiae_contig1749:15575..17123- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGATTCGGACGGGAGCCTCGGCGGGAGCTATGATTACCAATACTA
CGCCGATCTGGTGGAGTCGCTTGTGCCGCCGGAAACCGATGCTACTGATT
ACGGTCAGTAGGAACCGCTTACGCCTTGCCAGCTGTTGTTGTTTTCGGCG
TCGTAACGCTCCACAATGAATGCCTACCTTAGTTCTGCCTGGCTGGAATA
CCTGACGCGCTGGGCTAAACATATTTGTTCAACAAACCGGCTTTTGTTTT
GCCGGCCTTCGTGCCCTGCTCTGCTGTAGCCAGCTTACTACCCGTTTGTA
CGAAGCGAGCAACACAGAGGAAGTGCACGCAACGCCGGCTCGGGGATCAG
TAGAACGCCATGGCTTCTGAAAGGCAGCCAAAAAGACGGACGACCTGATA
TCTTCACCACTGCTGCGTGTCTGTGTTTGTTCCCCGGCTACAGCTCAACG
TGCACCTAACTATGCCAGCTAGCCTTGTGCGGGCGCTCATAACCTCTTCC
CCGCCCTCTGGATTGTCAGCGGTGCACTTGCACCCCGAAACCGGTGACAC
CTTGCGTGTGTTTTATCTCCCCTCGCTCACAGGTATTGCCATGTTTCTGC
TGGTGGCCTGCTCGGTCCTCATCGTGGTGTTTGCTTCCGCCCTGGTGTTT
TTCTTCCTCAAGCGCAACGTTTTCGAGATCAGGGCAAGGTGCAGTGGCAG
CCAAGATGGGCGGGCCTGTAGACGATAGAACGGATGGACGGGTCAGTTAA
GGAGTAGACCGCTGGGTCGCACTAAAACATGCCGACTGATCAAGCGGAGG
TGGAGGCAACTCCTAAGCGCTGGTGTTGTCATTGCTGTACGTATGTAGTA
AGAAGATTCGAACGGCAAATGACGAAACAAGCGCAACCGACCGCCGTTTT
TTTTAGCATACATAATTAAGTGTGGTTTTTTGCGACGTGTTCCATCATGC
ACGTCGAACCGGAGGTCTATACGGAATGTTTTAAGGTTTGCAGCGTGGGT
GGGGCCTTTCATGCGGATTTTCTTTTATCGCAAAATAGAAAATGAATCAC
CCAAGCGATTGTTGCCTTGCGCCTGGTGTCTCGGACCAAGTAGCGGCGGT
CGACACTTGAAACTGAGCGCTATCGCTCCAATCACGGTGCACTGCTGCTG
CTGCTGTGTTTTTCCGAGACCCGCCAGCTACGCATAGCAAATCGCTTGCC
CTTGGTGGGTGCATGATAATTGGATTTTGTGGACTCGAAACGCGTTTTTT
GTTCTCGAGGTATTGTAGTCATTCCTGATAACCGCCTCAGAGCGCAGCAT
CGCTCTGCGTTCTTGTATTTCTTCTGTTTCGTGCCTGGCACGTGGCCCCA
TGGGCCACGAAGCCAGGTTTTCCCCCCACGTTGCGAGAGTCGAAAGCGAA
ACTCATATCGCCTCGTCTTCGACTTTCTGGCGTTGTACCTCTCAGCCCTG
CCGACTGACCCCCGAATACCTCTTGAGCCCGTTGCTTTATTCGGTTCGTT
TCGTCGCAGGTCCCCCCTCCTGGTGATGCTGTCGGGAGCGTGTATTATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1749:15575..17123-

>mRNA_L-elsbetiae_contig1749.4917.1 ID=mRNA_L-elsbetiae_contig1749.4917.1|Name=mRNA_L-elsbetiae_contig1749.4917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig1749:15575..17123- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGATTCGGACGGGAGCCTCGGCGGGAGCTATGATTACCAATACTA
CGCCGATCTGGTGGAGTCGCTTGTGCCGCCGGAAACCGATGCTACTGATT
ACGATGGCAGATTCGGACGGGAGCCTCGGCGGGAGCTATGATTACCAATA
CTACGCCGATCTGGTGGAGTCGCTTGTGCCGCCGGAAACCGATGCTACTG
ATTACGGTATTGCCATGTTTCTGCTGGTGGCCTGCTCGGTCCTCATCGTG
GTGTTTGCTTCCGCCCTGGTGTTTTTCTTCCTCAAGCGCAACGTTTTCGA
GATCAGGGCAAGGTATTGCCATGTTTCTGCTGGTGGCCTGCTCGGTCCTC
ATCGTGGTGTTTGCTTCCGCCCTGGTGTTTTTCTTCCTCAAGCGCAACGT
TTTCGAGATCAGGGCAAGGTCCCCCCTCCTGGTGATGCTGTCGGGAGCGT
GTATTATGGTCCCCCCTCCTGGTGATGCTGTCGGGAGCGTGTATTATG
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