mRNA_L-elsbetiae_contig174.4876.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig174.4876.1
Unique NamemRNA_L-elsbetiae_contig174.4876.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig174.4876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig174contigL-elsbetiae_contig174:40051..42037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size291
Cds size291
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig174.4876.1prot_L-elsbetiae_contig174.4876.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig174 40051..42037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.6197417-CDS-L-elsbetiae_contig174:40050..401161622815724.6197417-CDS-L-elsbetiae_contig174:40050..40116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig174 40051..40116 -
1691683061.5927439-CDS-L-elsbetiae_contig174:40050..401161691683061.5927439-CDS-L-elsbetiae_contig174:40050..40116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig174 40051..40116 -
1622815724.633434-CDS-L-elsbetiae_contig174:40662..407381622815724.633434-CDS-L-elsbetiae_contig174:40662..40738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig174 40663..40738 -
1691683061.604807-CDS-L-elsbetiae_contig174:40662..407381691683061.604807-CDS-L-elsbetiae_contig174:40662..40738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig174 40663..40738 -
1622815724.6458466-CDS-L-elsbetiae_contig174:41212..412471622815724.6458466-CDS-L-elsbetiae_contig174:41212..41247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig174 41213..41247 -
1691683061.621314-CDS-L-elsbetiae_contig174:41212..412471691683061.621314-CDS-L-elsbetiae_contig174:41212..41247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig174 41213..41247 -
1622815724.6581302-CDS-L-elsbetiae_contig174:41923..420371622815724.6581302-CDS-L-elsbetiae_contig174:41923..42037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig174 41924..42037 -
1691683061.6304538-CDS-L-elsbetiae_contig174:41923..420371691683061.6304538-CDS-L-elsbetiae_contig174:41923..42037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig174 41924..42037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig174.4876.1

>prot_L-elsbetiae_contig174.4876.1 ID=prot_L-elsbetiae_contig174.4876.1|Name=mRNA_L-elsbetiae_contig174.4876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
LSLLGQKAIQPDENNLLAAPVVFSGDGLHIYWAIPGKKRIYVFDSTNIDT
HIDEVGIVSNQGCVYLGPTSSDTLVVAIFQENIQRFQRDVSTGFLTL
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mRNA from alignment at L-elsbetiae_contig174:40051..42037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig174.4876.1 ID=mRNA_L-elsbetiae_contig174.4876.1|Name=mRNA_L-elsbetiae_contig174.4876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1987bp|location=Sequence derived from alignment at L-elsbetiae_contig174:40051..42037- (Laminarionema elsbetiae ELsaHSoW15)
CTTTCTCTTCTCGGCCAAAAGGCAATCCAACCCGATGAAAACAATCTCCT
AGCGGCCCCTGTCGTCTTCAGCGGTGATGGTCTCCACATCTACTGGGCTA
TTCCGGGCAAAAAGGTGAGTGCCTGAGTAACGCGAGGCTGCAAGCCACAC
GCACCTCGGAAGTACCTTCTAAGGGATGCGCAATTTGATAAAACAAAATG
AGGACAGGACGACCTACTAAATTGGCGGACAATGCTACGCACACATCAAC
GCTGTTGCCCAGGGGTGCGATATATAACCAAGTCAGAAAAACGACTGGTA
AAACGATTGCGCGTGGACGCGCTCGCTTGCCTCGTTGCGCGTTACGGATT
GATGTATTCGCACAAGGTTTGTAGTGCGTGGAAGCGTGCGTCCCCGATCT
TGGAAAGCAAACCGAGGGAAGGCGGTTTTTTCGGAACGCCAATAGTGGCC
GAAACTGAACCATATTGCCGGAATTGGCATCAAACACGCATATAGATGGA
AGTATTAAATGGTTTCGATCGACCGTATATTATCGAGAACGTTTTGCTTT
GCGTCACGGAAAAGGTAGGCTTTATTAAAGCGCGACCACCCCATTTGCCC
GTTTCGTCCATCACCTTAACAAATGACGGCATCGACGACGAATATTTGCA
AACGTCGGGAAAAAAATCCACCCGTGCGCGACAATGCGGGCGAATTCACC
ACACCATCTTTACGGTGGCCTCGTGCACGGGATTGGCACGGTGGTGGGAA
TCTTCGCACGTACACTGTGATCGTCTCCACCGGCATCCAGAGAATCTACG
TGTTCGATTCTACGAACATTGACACGTAAGTGGACACATTGTCCGGTTTA
AACTACAACAGAGAGGCGCGCTTTCTTTCAAAGCAGCTTGGAATGCTCAA
GTCACAACTCTTGTGTCGGGGGAGAGCCCACAACCGACGTGTGGATCAAA
GTGGGATGATTTTCCCGGAGTTTTGCGTCGAGAGAGAGCCTCCCCATGGG
TCAAAGTGGGAGTTTTAGTCACAGCCTCACCGCAGGTTGAATACATGCTG
GGTTGGGCGGTGAATGTTGCTGTCGAGCGTGCTGAAGCGTGCCGCTCAAG
TTCTTTGCGCATAATCTTCGGTATTTTGTCGCTCCAGGGGGCGACACAAG
TGTATGTGGAGCGATCGCCCAAGCCTTGTTTGGATGCCTGATCCATTATT
TGCGTCTGACACAGCCTGTTGGAATCCTCACGCCGATGCTTTGTTTCTGT
GCGATTTGTTGCTTCAATCTCTTGTTTGCCCAACTCTCGAAACCCTCAGC
CACATAGATGAAGTCGGCATAGTATCAAATCAAGGGTGTGTCTACCTCGG
ACCGACGTCAAGCGACACTCTCGTGGTGAGTGTGATGGGGAGGTAACACG
CAATTCGATGTTCGCGGTGGCGTTCGAAACCCGAACCGCCCAAATATTAC
CGAATGTAACTCTGCCGGCAAAAGACGCTCTCGAGACGCTCGCTCACCCA
TATTATTTTGCCAACGGTGTCCCGGCGTCGATAGTTGCGGGATTCTAGAG
GATACACGATTCTGTCGCTTCCTTGTGTGTTGTATTTATTGCCCCGTCTT
CGTTATCTTCACGTCGGTTGACGTTTCCGACATTCCGGTAAAGCACACCG
GAGAGCACTGCACCCCAAGCACCTCTCACACCTTGGGGTCAGAAAACGCC
TCAACGCGGAAACGCACCGACGGCAAGTGCGTTGGACCAAACCCCAACAG
ACCGTAGACGTCGAGAGGGATTTCGTGTTTTTTCTTCCACCAGAAACGGA
AAGGTGTTTGTTCGTGTTGATGTCACCGCACACCCAGGGGTTTTCGAGGG
CTCCGTTTCTCCCTCCGTAACTTTCTCTCTCGCGCACCCCCTGGATATCG
TTGTTTTCTCCTACGAAGTAGGTGGCGATCTTCCAAGAAAACATTCAGCG
GTTTCAACGGGATGTCTCCACTGGATTTCTGACCCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig174:40051..42037-

>mRNA_L-elsbetiae_contig174.4876.1 ID=mRNA_L-elsbetiae_contig174.4876.1|Name=mRNA_L-elsbetiae_contig174.4876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig174:40051..42037- (Laminarionema elsbetiae ELsaHSoW15)
CTTTCTCTTCTCGGCCAAAAGGCAATCCAACCCGATGAAAACAATCTCCT
AGCGGCCCCTGTCGTCTTCAGCGGTGATGGTCTCCACATCTACTGGGCTA
TTCCGGGCAAAAAGCTTTCTCTTCTCGGCCAAAAGGCAATCCAACCCGAT
GAAAACAATCTCCTAGCGGCCCCTGTCGTCTTCAGCGGTGATGGTCTCCA
CATCTACTGGGCTATTCCGGGCAAAAAGAGAATCTACGTGTTCGATTCTA
CGAACATTGACACAGAATCTACGTGTTCGATTCTACGAACATTGACACCC
ACATAGATGAAGTCGGCATAGTATCAAATCAAGGGTGTGTCTACCTCGGA
CCGACGTCAAGCGACACTCTCGTGCCACATAGATGAAGTCGGCATAGTAT
CAAATCAAGGGTGTGTCTACCTCGGACCGACGTCAAGCGACACTCTCGTG
GTGGCGATCTTCCAAGAAAACATTCAGCGGTTTCAACGGGATGTCTCCAC
TGGATTTCTGACCCTGGTGGCGATCTTCCAAGAAAACATTCAGCGGTTTC
AACGGGATGTCTCCACTGGATTTCTGACCCTG
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