mRNA_L-elsbetiae_contig17331.4851.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17331.4851.1
Unique NamemRNA_L-elsbetiae_contig17331.4851.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17331.4851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17331contigL-elsbetiae_contig17331:537..3117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1408
Cds size1122
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17331.4851.1prot_L-elsbetiae_contig17331.4851.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17331 1752..2873 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.3449562-UTR-L-elsbetiae_contig17331:536..5641622815722.3449562-UTR-L-elsbetiae_contig17331:536..564Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17331 537..564 +
1691683059.9994974-UTR-L-elsbetiae_contig17331:536..5641691683059.9994974-UTR-L-elsbetiae_contig17331:536..564Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17331 537..564 +
1622815722.3552244-UTR-L-elsbetiae_contig17331:1737..17511622815722.3552244-UTR-L-elsbetiae_contig17331:1737..1751Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17331 1738..1751 +
1691683060.0111778-UTR-L-elsbetiae_contig17331:1737..17511691683060.0111778-UTR-L-elsbetiae_contig17331:1737..1751Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17331 1738..1751 +
1622815722.3768387-UTR-L-elsbetiae_contig17331:2873..31171622815722.3768387-UTR-L-elsbetiae_contig17331:2873..3117Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17331 2874..3117 +
1691683060.0313158-UTR-L-elsbetiae_contig17331:2873..31171691683060.0313158-UTR-L-elsbetiae_contig17331:2873..3117Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17331 2874..3117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.365036-CDS-L-elsbetiae_contig17331:1751..28731622815722.365036-CDS-L-elsbetiae_contig17331:1751..2873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17331 1752..2873 +
1691683060.0209966-CDS-L-elsbetiae_contig17331:1751..28731691683060.0209966-CDS-L-elsbetiae_contig17331:1751..2873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17331 1752..2873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17331.4851.1

>prot_L-elsbetiae_contig17331.4851.1 ID=prot_L-elsbetiae_contig17331.4851.1|Name=mRNA_L-elsbetiae_contig17331.4851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=374bp
MGASAELAPKPSPRQVGRAAAATSTPELRQTTGSNQPPGPVPPASPVVMS
SAPASSERPVLDMPSHFPYAAAWRLLPYDQQLAICSPAAAAEAVLVAART
IDQDRQQQARRLREEEEQRLVARRAGTLAREARLRILAQEQADIKAANGR
LAEQLRGLQDEQSALDAKLGTTTSAQDIMLLREEKLARDETAERERCASQ
LASFAQPSSPRLDPVSATAPPASSTAAHLPRRQQQRHLPPLSEPPLRPQR
RILLRPRCPPLFWPLSRWPTFLLWRRTRFWLLHGLPSLPPPARRRLRPPA
QRRHTPGQRPCSFTVISVGQTRASRGLPNAIPMAFDTSTASSSPSSRCVC
FSPLARITPASRCTSSPTFRTAP*
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mRNA from alignment at L-elsbetiae_contig17331:537..3117+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17331.4851.1 ID=mRNA_L-elsbetiae_contig17331.4851.1|Name=mRNA_L-elsbetiae_contig17331.4851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2581bp|location=Sequence derived from alignment at L-elsbetiae_contig17331:537..3117+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGCAATAGCTGAGGAAGGATAAACAAGCGAGTTATACTATTCTGGCAC
CCGCTAGAGATCGACACGCGTAAACTTGTTAAACTTGGCGTCAGTCGGCT
TTCGAACGTTGATCACTAGTTGAGTTGCTGCCAGCGTTTGGCAGCGCTCC
GTTTTACTCTAGGCTAGGTTGAAATCTCTTTTGTGGCCCTCGCTTGCTTT
GTTTTTTCCCTCGGGATGTCACTTCGCGGTCGACTCCGCGACGAGGGTAC
CCATGAGGATTCCGTAGATAGTGGTTCCTCTGGTACCGCTTCTTCGCCCC
TTCCTGCTACTGCTGCTTTTGCAAATGATTTGCTTGAATTTCCGGAGAAA
TCCGATCATGCTCCCGTCGGGGCCTACCACCTCGCTTATGAATGCTGCCT
TGAACATGCCCACTTCTCCTTCGGGAACTCGCGCCATTCAATTCGATGTT
ACTAGTGAGTCCCTTGCTGCCCTGCGCGCTAGTGCGACGCCTCGTTCCCC
GCCTGCTTCAAGTTTTGATATACACCTTGCTGATTTTCAGCGTGCACAGC
CGTCGTTGACGGGTCGAATTTCCTCTTCAGATCACCTTCAACCTGCAGCT
GTCCCCGCCTATGATTCTCTGCCTTCCCCCCCCGTAGCTGGTACTCCTAC
GCCTATCGATGACGCAGGCCGCATGTCTTCTTCATCTCGCATAGATGTCA
AACCTGCTGCTTTGTCTAGTTATATGGTGGACCCGATCCCTCGTTTTCGT
GGAGCTTTGCGAGCCTCAGCGCAGATGCATTCCACTCGCCGTGATTCCGT
TTCAAATTTTGTCAGCGACCATGCGTCAGCCCCCCCGCCTGTGTCAGCCC
TTCCACCTAGACAGCCCTCTAGTGTACGCCAGTTGGCTTCTTCCTTGTTG
CTTCCTGCTGCGCGTTCACGCACTGCATTTTCTCAGGACGACGTTGAACG
CATATCCAGAGAACGAACCCAAGAGAGGGCTCGTGCTTCTCGCTTGCAGG
CTCGTTTATCAAAACGAGCGATTTCAATGACTACTGCCTTGCCCCATGCA
CCAACCATTTCTTCGATCCCCACCGCTCTACCGCCTGCCCAACCAATTCC
TGCCCCCCCGATTATGTTGTCTTCCTCTGATGAACGCGCTGTTACTGCTG
CTGTCCAATTTCGCAACGACTCCCTCCTTGCCCAAAATGCCTTGCTTTCA
GCGCGAATTCTCGAAATGGGTGCCTCTGCCGAGCTCGCCCCTAAACCCTC
GCCTCGACAAGTTGGGCGTGCCGCAGCTGCCACGTCTACGCCGGAGCTTC
GCCAGACAACCGGCAGCAACCAGCCTCCTGGACCAGTTCCGCCGGCTTCG
CCGGTCGTCATGAGCTCCGCCCCGGCTTCTTCGGAGCGCCCTGTGCTGGA
CATGCCCTCTCATTTCCCATATGCGGCCGCCTGGCGCCTCCTGCCGTACG
ACCAGCAGCTTGCCATCTGCTCGCCGGCCGCAGCGGCGGAGGCTGTGCTC
GTCGCCGCCCGCACCATCGATCAGGACCGACAGCAGCAGGCGCGCCGACT
TCGCGAGGAGGAGGAGCAACGGCTCGTCGCGCGCCGCGCCGGCACTCTGG
CTCGAGAGGCCCGCCTCCGTATTCTTGCTCAGGAGCAAGCCGACATCAAA
GCGGCCAACGGCCGGCTTGCTGAGCAACTTCGGGGATTGCAAGACGAGCA
GAGCGCGCTGGACGCGAAGCTGGGAACGACGACTTCGGCGCAGGACATCA
TGCTTCTCAGAGAGGAGAAGCTGGCCCGCGACGAGACTGCCGAGCGCGAG
CGCTGTGCCAGCCAGCTGGCTTCCTTTGCTCAACCTTCGTCTCCACGCCT
CGACCCGGTCTCGGCGACGGCGCCCCCGGCTTCTTCGACGGCCGCACATC
TTCCTCGGCGGCAGCAACAGCGGCATCTTCCCCCCCTGTCCGAGCCGCCC
CTGCGACCTCAGCGCCGCATCCTGCTTCGACCACGGTGCCCGCCACTGTT
TTGGCCCCTGTCTCGGTGGCCGACTTTCCTGCTCTGGCGCCGGACCCGGT
TTTGGCTCCTTCATGGTCTACCGTCGCTTCCGCCTCCCGCTCGTCGGCGA
CTCCGGCCGCCGGCTCAGCGGCGGCACACCCCCGGGCAGCGGCCCTGTTC
GTTCACGGTGATAAGCGTTGGGCAGACTCGAGCATCACGCGGTTTGCCGA
ACGCCATCCCGATGGCCTTCGACACGTCGACAGCCTCATCATCACCCAGC
TCGCGCTGCGTCTGCTTCTCACCGTTGGCCAGGATAACTCCGGCATCACG
TTGCACCAGCTCGCCAACGTTTCGCACCGCCCCCTGACGCCAGCGACAGA
GAGCCACCTCCAAAATTTTCTGGCCGCGCTCCAAGCGGCTGTGGCGAACG
CTCCTGAGGCGGCTCCGTGGATGCGGGACAGGCCGGGCGTGTGGTCTGGG
TCTTGGGCGGAGCCTTCGTCTTCGTCGCTACCTCGTGGACGGAGTGCAGC
GGGTGTGGGTGGTGGCCGGCTGGACGCTCCGGGAACCAGTAGCTCGGCGT
GCCGTGACAAACGTGAGCGTTCACAGAGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17331:537..3117+

>mRNA_L-elsbetiae_contig17331.4851.1 ID=mRNA_L-elsbetiae_contig17331.4851.1|Name=mRNA_L-elsbetiae_contig17331.4851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2244bp|location=Sequence derived from alignment at L-elsbetiae_contig17331:537..3117+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGCCTCTGCCGAGCTCGCCCCTAAACCCTCGCCTCGACAAGTTGG
GCGTGCCGCAGCTGCCACGTCTACGCCGGAGCTTCGCCAGACAACCGGCA
GCAACCAGCCTCCTGGACCAGTTCCGCCGGCTTCGCCGGTCGTCATGAGC
TCCGCCCCGGCTTCTTCGGAGCGCCCTGTGCTGGACATGCCCTCTCATTT
CCCATATGCGGCCGCCTGGCGCCTCCTGCCGTACGACCAGCAGCTTGCCA
TCTGCTCGCCGGCCGCAGCGGCGGAGGCTGTGCTCGTCGCCGCCCGCACC
ATCGATCAGGACCGACAGCAGCAGGCGCGCCGACTTCGCGAGGAGGAGGA
GCAACGGCTCGTCGCGCGCCGCGCCGGCACTCTGGCTCGAGAGGCCCGCC
TCCGTATTCTTGCTCAGGAGCAAGCCGACATCAAAGCGGCCAACGGCCGG
CTTGCTGAGCAACTTCGGGGATTGCAAGACGAGCAGAGCGCGCTGGACGC
GAAGCTGGGAACGACGACTTCGGCGCAGGACATCATGCTTCTCAGAGAGG
AGAAGCTGGCCCGCGACGAGACTGCCGAGCGCGAGCGCTGTGCCAGCCAG
CTGGCTTCCTTTGCTCAACCTTCGTCTCCACGCCTCGACCCGGTCTCGGC
GACGGCGCCCCCGGCTTCTTCGACGGCCGCACATCTTCCTCGGCGGCAGC
AACAGCGGCATCTTCCCCCCCTGTCCGAGCCGCCCCTGCGACCTCAGCGC
CGCATCCTGCTTCGACCACGGTGCCCGCCACTGTTTTGGCCCCTGTCTCG
GTGGCCGACTTTCCTGCTCTGGCGCCGGACCCGGTTTTGGCTCCTTCATG
GTCTACCGTCGCTTCCGCCTCCCGCTCGTCGGCGACTCCGGCCGCCGGCT
CAGCGGCGGCACACCCCCGGGCAGCGGCCCTGTTCGTTCACGGTGATAAG
CGTTGGGCAGACTCGAGCATCACGCGGTTTGCCGAACGCCATCCCGATGG
CCTTCGACACGTCGACAGCCTCATCATCACCCAGCTCGCGCTGCGTCTGC
TTCTCACCGTTGGCCAGGATAACTCCGGCATCACGTTGCACCAGCTCGCC
AACGTTTCGCACCGCCCCCTGAATGGGTGCCTCTGCCGAGCTCGCCCCTA
AACCCTCGCCTCGACAAGTTGGGCGTGCCGCAGCTGCCACGTCTACGCCG
GAGCTTCGCCAGACAACCGGCAGCAACCAGCCTCCTGGACCAGTTCCGCC
GGCTTCGCCGGTCGTCATGAGCTCCGCCCCGGCTTCTTCGGAGCGCCCTG
TGCTGGACATGCCCTCTCATTTCCCATATGCGGCCGCCTGGCGCCTCCTG
CCGTACGACCAGCAGCTTGCCATCTGCTCGCCGGCCGCAGCGGCGGAGGC
TGTGCTCGTCGCCGCCCGCACCATCGATCAGGACCGACAGCAGCAGGCGC
GCCGACTTCGCGAGGAGGAGGAGCAACGGCTCGTCGCGCGCCGCGCCGGC
ACTCTGGCTCGAGAGGCCCGCCTCCGTATTCTTGCTCAGGAGCAAGCCGA
CATCAAAGCGGCCAACGGCCGGCTTGCTGAGCAACTTCGGGGATTGCAAG
ACGAGCAGAGCGCGCTGGACGCGAAGCTGGGAACGACGACTTCGGCGCAG
GACATCATGCTTCTCAGAGAGGAGAAGCTGGCCCGCGACGAGACTGCCGA
GCGCGAGCGCTGTGCCAGCCAGCTGGCTTCCTTTGCTCAACCTTCGTCTC
CACGCCTCGACCCGGTCTCGGCGACGGCGCCCCCGGCTTCTTCGACGGCC
GCACATCTTCCTCGGCGGCAGCAACAGCGGCATCTTCCCCCCCTGTCCGA
GCCGCCCCTGCGACCTCAGCGCCGCATCCTGCTTCGACCACGGTGCCCGC
CACTGTTTTGGCCCCTGTCTCGGTGGCCGACTTTCCTGCTCTGGCGCCGG
ACCCGGTTTTGGCTCCTTCATGGTCTACCGTCGCTTCCGCCTCCCGCTCG
TCGGCGACTCCGGCCGCCGGCTCAGCGGCGGCACACCCCCGGGCAGCGGC
CCTGTTCGTTCACGGTGATAAGCGTTGGGCAGACTCGAGCATCACGCGGT
TTGCCGAACGCCATCCCGATGGCCTTCGACACGTCGACAGCCTCATCATC
ACCCAGCTCGCGCTGCGTCTGCTTCTCACCGTTGGCCAGGATAACTCCGG
CATCACGTTGCACCAGCTCGCCAACGTTTCGCACCGCCCCCTGA
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