mRNA_L-elsbetiae_contig17310.4838.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17310.4838.1
Unique NamemRNA_L-elsbetiae_contig17310.4838.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17310.4838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17310contigL-elsbetiae_contig17310:865..3123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size287
Cds size285
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17310.4838.1prot_L-elsbetiae_contig17310.4838.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17310 865..3121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.340388-CDS-L-elsbetiae_contig17310:864..9381622815721.340388-CDS-L-elsbetiae_contig17310:864..938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17310 865..938 +
1691683059.4152265-CDS-L-elsbetiae_contig17310:864..9381691683059.4152265-CDS-L-elsbetiae_contig17310:864..938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17310 865..938 +
1622815721.356485-CDS-L-elsbetiae_contig17310:1311..14161622815721.356485-CDS-L-elsbetiae_contig17310:1311..1416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17310 1312..1416 +
1691683059.4246411-CDS-L-elsbetiae_contig17310:1311..14161691683059.4246411-CDS-L-elsbetiae_contig17310:1311..1416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17310 1312..1416 +
1622815721.369446-CDS-L-elsbetiae_contig17310:2104..21851622815721.369446-CDS-L-elsbetiae_contig17310:2104..2185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17310 2105..2185 +
1691683059.4341128-CDS-L-elsbetiae_contig17310:2104..21851691683059.4341128-CDS-L-elsbetiae_contig17310:2104..2185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17310 2105..2185 +
1622815721.3820837-CDS-L-elsbetiae_contig17310:3096..31211622815721.3820837-CDS-L-elsbetiae_contig17310:3096..3121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17310 3097..3121 +
1691683059.442469-CDS-L-elsbetiae_contig17310:3096..31211691683059.442469-CDS-L-elsbetiae_contig17310:3096..3121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17310 3097..3121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17310.4838.1

>prot_L-elsbetiae_contig17310.4838.1 ID=prot_L-elsbetiae_contig17310.4838.1|Name=mRNA_L-elsbetiae_contig17310.4838.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
AHAPRCFDPESPHYSCNKLGGGGSINLAGCGLTNNRGLKRLFESCVNTVS
SNDVGKIHYVLLSSNKLETLPEGMFQMFQGLPSLHYLFLDNNALE
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mRNA from alignment at L-elsbetiae_contig17310:865..3123+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17310.4838.1 ID=mRNA_L-elsbetiae_contig17310.4838.1|Name=mRNA_L-elsbetiae_contig17310.4838.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2259bp|location=Sequence derived from alignment at L-elsbetiae_contig17310:865..3123+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCATGCTCCACGATGCTTTGATCCCGAGAGCCCCCACTACAGCTGCAA
TAAGCTGGGCGGCGGAGGGTCGATGTGAGGTCGATTTTGGAACAATGTTA
CACCTAAATAGTCTATAGCCATAAAAAAACGCTGGCGAAAGCTTTATCGG
CTGGATACAAGTCTATCGGCAAGAGTTAGTAGGCCTGACATTTGTATGTA
CTATTGGCGCGTATGCGGGGTACATAGAGCTTGCACGCTTTCGGATTGTT
CATGCCGGCTGGCATCGTCGGTGGCTTATCACCGGAGTGTTGATCAAGTT
ACACATATGCTAGGCGGTCTTGTTGCCGATGTGTGGCAAGCAAAGAACTG
GCTCACAGCAGCTTTCGCCGAAACCGGCTTGCGCCCCCTCTTTTCTCTAT
GACTGACCCTCTGGGTGTCCGCCGTGCCCTCGTGTGACCTGCCACAGCAA
CCTGGCGGGCTGTGGCCTGACGAACAACCGCGGCCTCAAACGTCTTTTCG
AGTCATGCGTCAACACAGTATCGAGCAACGACGTGGGCAAGATTCACTAT
GTGTGAGTGCCTAAGGAGGTCCGCCAAGCGGTCGTTTGCGTTCGAGTGTG
GATACTACTGTATTTAAAACACATGACGGTAGAAACAATGGGCTTTACCT
CCGCAGGAACTATACATAGTTTTTAGTTTCAGGTCTACGATTAAATCAAC
TCTAACAATGATATGCTTTACCGACGTTTGAAACTGGAGGTGATGATTCC
AGGAGAGAGAGCCCGAAGCGACACATCGCGGTCTTTTTGTGTCATCTCTC
ACAGGAAAAAAGCGTAGATCCCTTTGCAGCTGTCTTCTCTCACCAAAAAC
TCGACGCTTGTTTGTTCTTACAAACACGATCGGTTTCCCGCATGCCTCAA
GCCGATCCTTGGTGTTGGCTGTTCAATCCGGTCGGGCCGAGTCACGAAAA
ATACATTTCCATGCCGTGTGCACGTTTTCCCCTCGCGTCTTGAAGTCGGG
TACCCGTCCTTACAAGCGCTCTTTAGTTGCTGTTGTTCCCATCTGGATCG
GGGACAGGTTTAAAGTAGAAGCTGGGATTGCTCGGTGAAAGGGGGCCCAA
AAGGGTAGCCACATCACTACTTGCGTTGCCCGCAATCGCACACCATTCTG
GAGGTAGGTCTTTGGGGCTGTCAAACGTGGGTTACACATTTTCTTCTACC
CCCCTTGCTCGGCACGTTTCGTTCCCCAACAACCCCGCAGTTTGCTGAGT
TCAAACAAACTGGAGACGCTGCCTGAAGGGATGTTCCAAATGTTCCAAGG
TCTCCCCTCGCTGCATTATCTGTAAGTTCACCTTATCGACGTCGCGTGAT
GGAGTTCCGCTACACGTTCGAATCGCCGCGACAAACAAGGAGGGTTTCTC
GTATCTGATTTCCTCCCACAGACAACGAACCCGTGTGATGGCTTCTGCAG
CAATCCACAACGGTTCGCATCATAGAACGTCCCGCCTCTAGCCTCTTACT
CCCCTGGTGTCGAATCAGATTGATCGGCCGACTTTTACTTCATCGATACA
TAGATACGATTTGGTGCCCTAACCCGATCAGCCGGTTTGGGGAGCCTCGA
AGGGCCTGGACAGCAGAGGGTGTGCGAACTGTTTTTCCCGTTCGTCTCCG
AGTATGCCGCATTTCGTGTTATCTCCGTGGCTCGTCGGTTACACAGCAAC
CTCTCGATACGGTGTAGCTTGCGCGCAGTCATCGTCGAGGGTGCTACACT
CCAGAATATGTTAGCATGTAGCTGGGTTACCACGGTCTTGGGGCTACGTT
TAGTTCAGTTTCTGGGAGATGTTCCGATCAGTTGGAGGCAAGAGGTGGAG
GACAGCCAATCACACGGGATTGTTGGGGTCTTTTACGTCCTCCATTCGGG
CCGAACCCTCTGGCCCTCGGTCTTCGGGACGTGGCACGGCACGGACGAAT
GGCCGGCAAGCCACCCGAATGCGGTCACGTTGCTCTCAGAATCGTTCCGA
AGGAGCTAACCCGGTCAGCTCGCCCCCCGAAGAGTGAGCGTGCTATCAGT
TGGTACCGTGTCTACGGTACTCCGAGAATATCAGCTACACATGATTCGTA
GGTCACCGTGTTCACATCGCGTGAGGGTAAAGACTGGTGGGCTGGCACGC
CATTCCAAAAGAAAGTGGGTCACGCACGCACTCTGTTCTATCCCTCTTGC
TCGGTATGATTCTTTCCCCGACAACTCCGCAGATTCCTGGATAACAACGC
ACTAGAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17310:865..3123+

>mRNA_L-elsbetiae_contig17310.4838.1 ID=mRNA_L-elsbetiae_contig17310.4838.1|Name=mRNA_L-elsbetiae_contig17310.4838.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig17310:865..3123+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCATGCTCCACGATGCTTTGATCCCGAGAGCCCCCACTACAGCTGCAA
TAAGCTGGGCGGCGGAGGGTCGATGCCCATGCTCCACGATGCTTTGATCC
CGAGAGCCCCCACTACAGCTGCAATAAGCTGGGCGGCGGAGGGTCGATCA
ACCTGGCGGGCTGTGGCCTGACGAACAACCGCGGCCTCAAACGTCTTTTC
GAGTCATGCGTCAACACAGTATCGAGCAACGACGTGGGCAAGATTCACTA
TGTCAACCTGGCGGGCTGTGGCCTGACGAACAACCGCGGCCTCAAACGTC
TTTTCGAGTCATGCGTCAACACAGTATCGAGCAACGACGTGGGCAAGATT
CACTATGTTTTGCTGAGTTCAAACAAACTGGAGACGCTGCCTGAAGGGAT
GTTCCAAATGTTCCAAGGTCTCCCCTCGCTGCATTATCTTTTGCTGAGTT
CAAACAAACTGGAGACGCTGCCTGAAGGGATGTTCCAAATGTTCCAAGGT
CTCCCCTCGCTGCATTATCTATTCCTGGATAACAACGCACTAGAGATTCC
TGGATAACAACGCACTAGAG
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