mRNA_L-elsbetiae_contig17241.4807.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17241.4807.1
Unique NamemRNA_L-elsbetiae_contig17241.4807.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17241.4807.1 vs. uniprot
Match: D8LH84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH84_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 2.040e-39
Identity = 77/106 (72.64%), Postives = 90/106 (84.91%), Query Frame = 1
Query:    1 LGSKSFTRKMIVVEENGAVLVMNTRSGLQEASIGDRTADPANLVLQLGLAKAEALLPALRTEAESGALNTTLLLTGDQVVVHDGQILEKPADRDEVRANIKSYAVS 318
            LGSKSFTRKMI+ EE G V ++ + + + EA+IGDRTADPA+LVLQLGLAKAEALLPAL+ EA+ G L+T+ LLTGDQVVVHDG+ILEKPAD DEVR NI SYA S
Sbjct:   16 LGSKSFTRKMII-EEMGFVPIVRS-ADINEAAIGDRTADPADLVLQLGLAKAEALLPALKAEADRGELSTSWLLTGDQVVVHDGRILEKPADEDEVRRNIASYARS 119          
BLAST of mRNA_L-elsbetiae_contig17241.4807.1 vs. uniprot
Match: A0A836CPK2_9STRA (Inosine triphosphate pyrophosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPK2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.370e-25
Identity = 62/107 (57.94%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 LGSKSFTRKMIVVEENGAVLVMNTRSGLQEASIGDRTADPANLVLQLGLAKAEALLPALR-TEAESGALNTTLLLTGDQVVVHDGQILEKPADRDEVRANIKSYAVS 318
            LGSKS TRK+I+ EE G   ++ T + + E +IGDR +DPA LVL++G AKA+ALLP+L    A  GA    LLLTGDQVVVHDG++LEKP D  EVR NI +YA+S
Sbjct:   11 LGSKSATRKLII-EEMGWEAIIRT-ADIDEKAIGDRASDPAQLVLEIGTAKADALLPSLADAAARHGA---RLLLTGDQVVVHDGRVLEKPHDYAEVRRNIAAYALS 112          
BLAST of mRNA_L-elsbetiae_contig17241.4807.1 vs. uniprot
Match: A0A6V1TL15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TL15_HETAK)

HSP 1 Score: 81.3 bits (199), Expect = 1.830e-16
Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 LGSKSFTRKMIVVEENGAVLVMNTRSGLQEASIGDRTAD----PANLVLQLGLAKAEALLPALRTEAESGALNTTLLLTGDQVVVHDGQILEKPADRDEVRANIKSYA 312
            LGSKSFTR+MIV +E G   ++   + + E +IGDR+AD    P  LVL LG AKA+A+L +     + G     LLLTGDQVVVH+G+ILEKP   +E R  I+ YA
Sbjct:   47 LGSKSFTRQMIV-KEMGMEPIIRV-ADIDEKAIGDRSADTGWDPERLVLALGNAKADAILESGLQPGDHG-----LLLTGDQVVVHEGRILEKPTSLEEARQFIEGYA 147          
BLAST of mRNA_L-elsbetiae_contig17241.4807.1 vs. uniprot
Match: A0A7S1UJX9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJX9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.930e-14
Identity = 52/104 (50.00%), Postives = 62/104 (59.62%), Query Frame = 1
Query:    1 LGSKSFTRKMIVVEENGAVLVMNTRSGLQEASIGDRTADPANLVLQLGLAKAEALLPALRTEAESGALNT-TLLLTGDQVVVHDGQILEKPADRDEVRANIKSY 309
            LGSKS TR+ IV +      V    + + E +IGDR  D   LVL++G AKA ALLP L   AE+G     T+LLTGDQVVV    +LEKP D DE R  IK Y
Sbjct:   79 LGSKSETRQAIVADMGFDFRVET--ADIDEKAIGDRAGDVRELVLEIGKAKAAALLPRL---AEAGGEPAGTVLLTGDQVVVQGDSVLEKPRDLDEARRFIKRY 177          
BLAST of mRNA_L-elsbetiae_contig17241.4807.1 vs. uniprot
Match: A0A7R9WE49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WE49_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.580e-13
Identity = 48/116 (41.38%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    1 LGSKSFTRKMIVVEENGAVLVMNTRSGLQEASIGDRTADPANLVLQLGLAKAEALLPALRTE-AESGALNTT---------LLLTGDQVVVHDGQILEKPADRDEVRANIKSYAVS 318
            LGS SFTRK I+++E G V  +  R  + E  +GDR  DP+ LVL L  AK + L+  L  +  E G L            ++LT DQVV HDG +LEKP   +E R+ +  YA S
Sbjct:   48 LGSGSFTRK-IILKEMGIVYDIVVRP-IDEKGVGDRDGDPSELVLTLAKAKCDHLVSVLHNDDGEEGILPQKACEGDHGGWVVLTADQVVTHDGSVLEKPESIEEARSFVAGYATS 161          
BLAST of mRNA_L-elsbetiae_contig17241.4807.1 vs. uniprot
Match: A0A7S0PSJ5_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0PSJ5_MICPS)

HSP 1 Score: 71.2 bits (173), Expect = 1.500e-12
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = 1
Query:    1 LGSKSFTRKMIVVEENGAVLVMNTRSGLQEASIGDRTADPANLVLQLGLAKAEALLPALRTE------AESGALNTTLLLTGDQVVVHDGQILEKPADRDEVRANIKSYAVS 318
            LGSKSFTR+ I+ E      V    + + E +IGDRT  P +LV+ + +AKA+A++  +  E       +       +L+T DQVVVHDG + EKP  +DE R  I+ Y VS
Sbjct:   53 LGSKSFTRQAILKEMGIPYEV--AVADIDEKAIGDRTDSPKDLVMAIAVAKADAIVRKMGAELGPDMDGQWPIAEDAMLVTCDQVVVHDGVVREKPESKDEAREFIRGYGVS 162          
BLAST of mRNA_L-elsbetiae_contig17241.4807.1 vs. uniprot
Match: A0A0G4GMM6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GMM6_9ALVE)

HSP 1 Score: 70.9 bits (172), Expect = 1.790e-12
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 LGSKSFTRKMIVVEENGAVLVMNTRSGLQEASIGDR-TADPANLVLQLGLAKAEALLPALRTEAESGALNTTLLLTGDQVVVHDGQILEKPADRDEVRANIKSYA 312
            LGS S TRKMI+ E    +      + L E +IGDR    P  +V  LG AKA+ ++  L+ E E+     TLL+TGDQVVV +G+ILEKP   +E R+ ++ Y+
Sbjct:   25 LGSSSATRKMIIAEMG--LRYRTEIADLDERAIGDRENQSPEEIVTLLGKAKADVIMSQLKPEEEAEG---TLLITGDQVVVCEGKILEKPGSAEEARSFLQKYS 124          
BLAST of mRNA_L-elsbetiae_contig17241.4807.1 vs. uniprot
Match: A0A2V3ID47_9FLOR (Maf-like protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID47_9FLOR)

HSP 1 Score: 69.7 bits (169), Expect = 2.400e-12
Identity = 47/104 (45.19%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 LGSKSFTRKMIVVEENGAVLVMNTRSGLQEASIGDRTADPANLVLQLGLAKAEALLPALRTEAESGALNTTLLLTGDQVVVHDGQILEKPADRDEVRANIKSYA 312
            LGSKS++R+ ++ E     L +     + E SI D   DP  LV Q+ LAKA ALLP +   A       T+L+TGD VV H GQILEKPA   E R  + SYA
Sbjct:   14 LGSKSWSRRTLLKELGLPTLEIEIPD-IDERSIRDE--DPRILVQQIALAKARALLPRISPTASG----KTILITGDSVVTHKGQILEKPAHEQEARQFLASYA 110          
BLAST of mRNA_L-elsbetiae_contig17241.4807.1 vs. uniprot
Match: A0A7J7ICZ2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ICZ2_9RHOD)

HSP 1 Score: 65.1 bits (157), Expect = 2.200e-11
Identity = 48/107 (44.86%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    1 LGSKSFTRKMIVVEENGAVLVMNTRSGLQEASIGDRTADPANLVLQLGLAKAEALLPAL----RTEAESGALNTTLLLTGDQVVVHDGQILEKPADRDEVRANIKSY 309
            LGS S TR+ ++ E     +VM  R  + E +I  R  D   LV  LG AKA+ALL  L    R + +       LL+TGDQVVVH+G+ILEKP D  E R  I SY
Sbjct:   12 LGSSSRTRQQLLKELGYEFVVM--RPDIDEEAI--RHPDAERLVRLLGHAKADALLAHLGDRSRLDEQRAEGKPLLLITGDQVVVHEGRILEKPQDATEARRFISSY 114          
BLAST of mRNA_L-elsbetiae_contig17241.4807.1 vs. uniprot
Match: A0A833QPI2_9POAL (Maf-like protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QPI2_9POAL)

HSP 1 Score: 67.0 bits (162), Expect = 2.270e-11
Identity = 44/105 (41.90%), Postives = 60/105 (57.14%), Query Frame = 1
Query:    1 LGSKSFTRKMIVVEENGAVLVMNTRSGLQEASIGDRTADPANLVLQLGLAKAEALLPALRTEA-ESGALNTTLLLTGDQVVVHDGQILEKPADRDEVRANIKSYA 312
            LGS S +RK I+ +      VM   + + E  I  R   P +LV+ L  AKA+A++  L+    E G    TLL+T DQVV+H G+I EKP+D DE R  IK Y+
Sbjct:    8 LGSSSASRKQILSKMGYQFTVMG--ADIDEKQI--RREKPEDLVMALAEAKADAIIAKLKESGFEEGTSEPTLLITADQVVLHGGEIKEKPSDADEARQFIKGYS 108          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17241.4807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH84_ECTSI2.040e-3972.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CPK2_9STRA5.370e-2557.94Inosine triphosphate pyrophosphatase-like protein ... [more]
A0A6V1TL15_HETAK1.830e-1650.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1UJX9_9STRA1.930e-1450.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9WE49_9STRA6.580e-1341.38Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S0PSJ5_MICPS1.500e-1240.18Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
A0A0G4GMM6_9ALVE1.790e-1242.86Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A2V3ID47_9FLOR2.400e-1245.19Maf-like protein n=1 Tax=Gracilariopsis chorda Tax... [more]
A0A7J7ICZ2_9RHOD2.200e-1144.86Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A833QPI2_9POAL2.270e-1141.90Maf-like protein n=1 Tax=Carex littledalei TaxID=5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17241contigL-elsbetiae_contig17241:2169..3438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue3.8e-26
Seed eggNOG ortholog2880.D8LH84
Preferred nameMAF
KEGG koko:K06287
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016119,GO:0016120,GO:0016853,GO:0016859,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046246,GO:0071704,GO:0090471,GO:1901576
EggNOG free text desc.nucleoside-triphosphate diphosphatase activity
EggNOG OGsCOG0424@1,KOG1509@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons3
Model size318
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17241.4807.1prot_L-elsbetiae_contig17241.4807.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17241 2196..3438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.8770516-UTR-L-elsbetiae_contig17241:2168..21951622815718.8770516-UTR-L-elsbetiae_contig17241:2168..2195Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17241 2169..2195 +
1691683057.820199-UTR-L-elsbetiae_contig17241:2168..21951691683057.820199-UTR-L-elsbetiae_contig17241:2168..2195Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17241 2169..2195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.8875842-CDS-L-elsbetiae_contig17241:2195..22181622815718.8875842-CDS-L-elsbetiae_contig17241:2195..2218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17241 2196..2218 +
1691683057.8341315-CDS-L-elsbetiae_contig17241:2195..22181691683057.8341315-CDS-L-elsbetiae_contig17241:2195..2218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17241 2196..2218 +
1622815718.8975456-CDS-L-elsbetiae_contig17241:2511..26961622815718.8975456-CDS-L-elsbetiae_contig17241:2511..2696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17241 2512..2696 +
1691683057.845315-CDS-L-elsbetiae_contig17241:2511..26961691683057.845315-CDS-L-elsbetiae_contig17241:2511..2696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17241 2512..2696 +
1622815718.9087222-CDS-L-elsbetiae_contig17241:3355..34381622815718.9087222-CDS-L-elsbetiae_contig17241:3355..3438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17241 3356..3438 +
1691683057.8589458-CDS-L-elsbetiae_contig17241:3355..34381691683057.8589458-CDS-L-elsbetiae_contig17241:3355..3438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17241 3356..3438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17241.4807.1

>prot_L-elsbetiae_contig17241.4807.1 ID=prot_L-elsbetiae_contig17241.4807.1|Name=mRNA_L-elsbetiae_contig17241.4807.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
MIVVEENGAVLVMNTRSGLQEASIGDRTADPANLVLQLGLAKAEALLPAL
RTEAESGALNTTLLLTGDQVVVHDGQILEKPADRDEVRANIKSYAVS
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mRNA from alignment at L-elsbetiae_contig17241:2169..3438+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17241.4807.1 ID=mRNA_L-elsbetiae_contig17241.4807.1|Name=mRNA_L-elsbetiae_contig17241.4807.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1270bp|location=Sequence derived from alignment at L-elsbetiae_contig17241:2169..3438+ (Laminarionema elsbetiae ELsaHSoW15)
TTGGGCTCGAAGTCCTTCACGAGGAAGATGATCGTCGTCGAGGAGAATGG GTTTCACACCTGCCATGAGGTAAGAGTATAGTCGGCCAGTGTCCATACAG CTAAATAGATATAGCTGCAATCGAATGAGACGTCACTCCCGCATAGGCAT GCACGTGCCTGCTGTAGAGGCAGCCCACGAACGATGCATGTCTCTCTGTG TGCAACAAGTACAGCAGCATTAGTTCTGCCCGCCAAACGATAGACTAAGC ATGCACCAGCCAAGTGCACGTACATATGTGGAAAGAGCAGCATACACCAG CCGCATACGTACAGTATTTGCGCTCTGAGGCTCGCATTTTGAGTGCCGTC TTGGTGATGAACACGCGATCAGGCCTGCAAGAGGCGTCAATTGGCGACCG CACTGCAGACCCAGCCAACCTCGTGCTGCAACTTGGGCTGGCAAAGGCGG AAGCACTGCTCCCGGCACTGAGAACTGAGGCTGAAAGTGGGGCACTGAAC ACTACTTTACTTCTCACAGGAGACCAAGGTTATTCTTCCGTGGAACTGCC CGAGCAAGGGGCCTCTTCATTTACAGCAGTACACAACGCACATGCTGCTG TTTGTTTCACCGACGAACTGGGTATTTCCAGCGCACACATGGCAGAGAGA GTCGACTACATTACTGCCTCTCCGCTTCGATCGCAGCCTCCGGTGTTGAC GGTAGCACGATTATATGCTGATCCACGAAGCAGTACCTTCGTATCTGCCT TCAGGCAAGCGATAGAAAGTCTCCGGCTCTCTCTATCTACCAAGCTGGCC GATTGGCGTCGAAACCGTGCAACCGCTGCTTTTCTCCTTGTTCTGCTGGA AATGTTCACCCGTGAAGTACAGTGGTAACGCTGCGAGTTGACATCAGTGA TGCCTGCCCAGGCTTCTACGGGAAGTCGCGAGTCCTCTTTTAGTACCATG GTAGTCTCTCCTTGGACGTTCTCGCCCTTCAACACTCGGCACTCCTCTCC CATCTGGGCAGTTTTCAATTCTACCATTTGAACAGTACAATTACACACAG ACAACTGACCTGAGGGGAATCTAGTCGATGACCAATATATGAACTTCTAT TCGTACCGTACAACTTCAAAGGTTGATATTGCTGGTTCATCCTGCGTCGC CCGTCGCCTTTTCCGCGACTGCAAATGTGTTTGGCAGTTGTGGTCCATGA CGGGCAAATTCTTGAAAAACCCGCAGACCGAGACGAGGTTCGAGCCAACA TAAAAAGCTATGCGGTGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17241:2169..3438+

>mRNA_L-elsbetiae_contig17241.4807.1 ID=mRNA_L-elsbetiae_contig17241.4807.1|Name=mRNA_L-elsbetiae_contig17241.4807.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig17241:2169..3438+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCGTCGTCGAGGAGAATGGATGATCGTCGTCGAGGAGAATGGTGCC
GTCTTGGTGATGAACACGCGATCAGGCCTGCAAGAGGCGTCAATTGGCGA
CCGCACTGCAGACCCAGCCAACCTCGTGCTGCAACTTGGGCTGGCAAAGG
CGGAAGCACTGCTCCCGGCACTGAGAACTGAGGCTGAAAGTGGGGCACTG
AACACTACTTTACTTCTCACAGGAGACCAAGTGCCGTCTTGGTGATGAAC
ACGCGATCAGGCCTGCAAGAGGCGTCAATTGGCGACCGCACTGCAGACCC
AGCCAACCTCGTGCTGCAACTTGGGCTGGCAAAGGCGGAAGCACTGCTCC
CGGCACTGAGAACTGAGGCTGAAAGTGGGGCACTGAACACTACTTTACTT
CTCACAGGAGACCAAGTTGTGGTCCATGACGGGCAAATTCTTGAAAAACC
CGCAGACCGAGACGAGGTTCGAGCCAACATAAAAAGCTATGCGGTGAGCT
TGTGGTCCATGACGGGCAAATTCTTGAAAAACCCGCAGACCGAGACGAGG
TTCGAGCCAACATAAAAAGCTATGCGGTGAGC
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