mRNA_L-elsbetiae_contig1703.4712.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1703.4712.1
Unique NamemRNA_L-elsbetiae_contig1703.4712.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1703.4712.1 vs. uniprot
Match: A0A7S0M4S6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M4S6_9CRYP)

HSP 1 Score: 97.4 bits (241), Expect = 2.120e-19
Identity = 74/230 (32.17%), Postives = 111/230 (48.26%), Query Frame = 1 
Query:  841 LRAILLVLEHPEVQDPDFEA-VLHTLFKLAARLTKERRDELGAFFEGVEEERFARYLGAVQQFVALRLYSGGCASS-VLPAVHFIHLLYAANKHSRRVKDEAFYNEAINSELFSDRATLVDDYSKWVQDHHEANPAEFKSLISFGEVLDPASKAAVLSLDSQVQMRGTVNSELQEAMVFGGLAGVGLSAVSPHLKLKVRRSHIVADSLLALVMLAEEDLKKPLSVTFVGE 1524
            LR  ++VL  P + +P++   V   L     +L  E+RD +  +        F   + A QQF+ + +    C    V  A   + LL AAN  +R V     YN+AIN     +     +D+++W     +     F S  +   VLDP++K+ +L LD+  QMR  +   L  + +FGG       +  P+L LKVRR HIV D+LL +     +DLKKPL V F GE
Sbjct:   13 LRLFVVVLMWPGLMEPEYHTPVFKRLCAAVNQLAPEQRDAVQRWLRDCPPRMFREVIVAFQQFITIYVNEYRCIDDHVAAATKVLGLLNAANVVARHVSFRELYNDAIN-----ELVDFTEDFARW----RDTQRCSF-SFCAHPYVLDPSTKSRLLQLDANHQMRSQIRGALFRS-IFGG-------SECPYLILKVRREHIVRDTLLQISANGGDDLKKPLKVIFKGE 224
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BLAST of mRNA_L-elsbetiae_contig1703.4712.1 vs. uniprot
Match: A0A0M0JDW4_9EUKA (Ubiquitin-protein ligase e3a isoform 2 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JDW4_9EUKA)

HSP 1 Score: 96.3 bits (238), Expect = 2.560e-17
Identity = 79/239 (33.05%), Postives = 124/239 (51.88%), Query Frame = 1 
Query:  841 LRAILLVLEHPEVQDPDF-EAVLHTLFKLAARLTKERRDELGAFFEGVEEERFARYLGAVQQFVALRL-YSGGCASSVLPAVHFIHLLYAANKHS----RRVKDEA-----FYNEAINSELFSDRATLVDDYSKWVQDHHEANPAEFKSLISFGEVLDPASKAAVLSLDSQVQMRGTVNSELQEAMVFGGLAGVGLSAVSPHLKLKVRRSHIVADSLLALVMLAEEDLKKPLSVTFVGE 1524
            LR  +++L +P + +P + + VL  L  L  +L     D L +++  +   +  + +   QQF+ +RL ++     +V+ A   +  LY AN+ +    RR   EA     FYN+AIN E+      L +DY +W     ++   EF S      VL+PASK+ VL  D+  QM       +  ++  G        A SP+L +KVRRSH+++D+LL +  L +EDLKKPL V FVGE
Sbjct:  185 LRQFVILLLNPLLLEPQYHKQVLLPLLSLIEKLPPPIADRLSSWWSLLPTRQMEQMVAVCQQFLTVRLCHTQRIDDAVIAATRVLGQLYDANEAAMAVGRRKPSEALDYRRFYNDAINLEV-----NLKEDYRRW-----KSARGEF-SFCDHPFVLEPASKSRVLMYDATAQMTHEFEGAILRSLFVG--------ATSPYLVIKVRRSHLISDTLLQMG-LHKEDLKKPLKVQFVGE 403
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BLAST of mRNA_L-elsbetiae_contig1703.4712.1 vs. uniprot
Match: L8HHG5_ACACA (O ubiquitin protein ligase E3A n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HHG5_ACACA)

HSP 1 Score: 95.1 bits (235), Expect = 5.860e-17
Identity = 76/242 (31.40%), Postives = 127/242 (52.48%), Query Frame = 1 
Query:  841 LRAILLVLEHPEVQDPDF-EAVLHTLFKLAARLTKERRDELGAFFEGVEEERFARYLGAVQQFVALRLYSGGCASSV-----LPA-VHFIHLLYAANKHSRRVKDEA----FYNEAINSELFSDRATLVDDYSKWVQDHHEANPAEFKSLISFGEVLDPASKAAVLSLDSQVQMRGTVNSELQEAM---VFGGLAGVGLSAVSPHLKLKVRRSHIVADSLLALVMLAEEDLKKPLSVTFVGE 1524
            LR +++VL+ P + D D+ +++L  L +    L +  +D L +++  +  ER   +LG VQQ++ LR+ +   A S+     +PA V  + LLY AN+  R  KD+     FYN+AIN  +      L +D+ +W+      N  +F S  ++  V D  +K+ +L  +S V+     + + QEA+   +F G+        +P L  K+RR H++ D+L A+      DLKK L V FVGE
Sbjct:  171 LRQVVIVLQSPMLLDLDYHKSILGPLIRAIPLLPERSKDVLVSWWSQMSAERMRTFLGIVQQYITLRILAAPHAFSLHNDDYIPAGVRVLQLLYTANE--RITKDKLDYPEFYNDAINESI-----DLKEDFMRWID-----NSGQF-SFCNYSFVFDAGTKSKILQYESIVEQ----HHQRQEALRRTIFTGMVS------APALVFKIRREHLIQDTLSAIQRHDPADLKKELRVHFVGE 389
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BLAST of mRNA_L-elsbetiae_contig1703.4712.1 vs. uniprot
Match: A0A5D6XP60_9STRA (HECT domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP60_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 9.510e-17
Identity = 88/254 (34.65%), Postives = 125/254 (49.21%), Query Frame = 1 
Query:  829 TKADLRAILLVLEHPEVQDPDFEAVLHTLFKL----AARLTKERRDELGAFFEGVEEERFARYLGAVQQFVALRLYSGGCASSVLPAVHFIHLLYAANKHSRRVKDEA---FYNEAINSELFSDRATLVDDYSKWV----QDHHEANPAE--------FKSLISFGE---VLDPASKAAVLSLDSQVQMRGTVNSELQEAMVFGGLAGVGLSAVSPHLKLKVRRSHIVADSLLALVMLAEEDLKKPLSVTFVGE 1524
            T A LR  L++ EHP V DPD+  V+  L KL    +A      R+   A F+  E     R L  +QQ + + LY       V      +  L+A N + R V   A   FYN+A+NSE+      +++DY++ V    + H    P+           S +SF +   VLD  SK+ +L +DS ++ R    S  QEA     LAG  L   S +L L+VRR H++ DSL  LV L+ + LKKPL V F+GE
Sbjct:  260 TPAALRFFLVLFEHPSVFDPDYLNVVGGLCKLFYHSSAAAKALVREHWHAHFDNDE---LYRLLQVLQQAITVCLYGARKMDLVYACCSVLKELHAVN-NQRSVPFAAYDEFYNDAVNSEV-----DVIEDYARSVVFMKKRHAITAPSHEPFVLQPRMLSELSFCDYPFVLDAGSKSRILQVDSDLEQR----SRAQEA----ALAGPMLGLASQYLILRVRREHVIEDSLQQLVRLSADTLKKPLKVKFIGE 496
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BLAST of mRNA_L-elsbetiae_contig1703.4712.1 vs. uniprot
Match: A0A7S0Q656_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q656_9EUKA)

HSP 1 Score: 90.5 bits (223), Expect = 1.950e-15
Identity = 91/331 (27.49%), Postives = 147/331 (44.41%), Query Frame = 1 
Query:  565 LVGMDVKAASEVWKLLVQLDVEGVTGAVLNALDSLTQTLLVQSFLAREATAGQGVATTXXXXXXXXXXXXXXXXXXXXXXXXGRGDKDTKADLRAILLVLEHPEVQDPDF-EAVLHTLFKLAARLTKERRDELGAFFEGVEEERFARYLGAVQQFVALRLY-SGGCASSVLPAVHFIHLLYAAN----KHSRRVKDE-----AFYNEAINSELFSDRATLVDDYSKWVQDHHEANPAEFKSLISFGEVLDPASKAAVLSLDSQVQMRGTVNSELQEAMVFGGLAGVGLSAVSPHLKLKVRRSHIVADSLLALVMLAEEDLKKPLSVTFVGE 1524
            L G+D  +  E ++ L+Q     +  A++NA++SL   L V   LA+     +G A                                    +R   +++ +P + +P + + VL  L  L A L      +L  ++  +  E+  + +   QQFV +RLY +     +V      +  LY AN    +  RR   E     AFYN+A+N E+      L +DY +W  +  E +  E   +      L+P+SK+ VL  D+  QM       +  ++  G        A SP+L +KVRRSH+++D+LL +  L +EDLKKPL V FV E
Sbjct:  192 LSGLDTPSIVETYRALLQTHSGELLNALMNAMESLLVKLQVAQ-LAQPTFISEGRA------------------------------------VRQFFILMLNPLLLEPQYHKQVLLPLLSLIAVLPDACSAQLVQWWSLLPAEQLMQMVSVCQQFVTVRLYHTQRIDDAVQAGTQVLGQLYEANEVALRSGRRSTAEPLDYHAFYNDAVNQEV-----NLREDYRRWKSERDEFSFCEHPFI------LEPSSKSRVLMYDATAQMTHEFEGAILRSLFVG--------ATSPYLVVKVRRSHLISDTLLQM-SLRKEDLKKPLKVQFVAE 465
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BLAST of mRNA_L-elsbetiae_contig1703.4712.1 vs. uniprot
Match: A0A7R9ULG1_DIALT (Hypothetical protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9ULG1_DIALT)

HSP 1 Score: 89.7 bits (221), Expect = 2.360e-15
Identity = 74/233 (31.76%), Postives = 110/233 (47.21%), Query Frame = 1 
Query:  844 RAILLVLEHPEVQDPDF-EAVLHTLFKLAARLTKERRDELGAFFEGVEEERFARYLGAVQQFVALRLYSGGCASS----VLPAVHFIHLLYAANKHSRRVKD-EAFYNEAINSELFSDRATLVDDYSKWVQDHHEANPAEFKSLISFGEVLDPASKAAVLSLDSQVQMRGTVNSELQEAMVFGGLAGVGLSAVSPHLKLKVRRSHIVADSLLALVMLAEEDLKKPLSVTFVGE 1524
            RA+ ++L  P + +P   E +L   + L   L  + R  L A +    + +    +    +F+ + +     +      V  AV  + LLYAA++ S    +  AF N+AIN+EL +D   L  D+ +W Q       A   SL +   VL+PA+KA+VL L S  QM          +M    +        SP L L+VRR H++ DSL  L   A E LKKPL V F+GE
Sbjct:   20 RALAILLSCPALVEPQHHETILAKAYSLVEILGSDERAALVAEWAQAPQAQLRHAVRCAHEFIIIAVLENSLSDPIDEPVANAVGALGLLYAASEGSAHALEFSAFTNDAINAELAADETLLRQDHRRWQQ-------ANVFSLCAHAFVLEPAAKASVLKLSSMDQMSSEFEGAFFRSMFTRSMH-------SPFLLLRVRRDHLIRDSLHQLAARAAE-LKKPLKVHFIGE 237
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BLAST of mRNA_L-elsbetiae_contig1703.4712.1 vs. uniprot
Match: A0A8J5XSP7_DIALT (HECT domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSP7_DIALT)

HSP 1 Score: 89.7 bits (221), Expect = 3.230e-15
Identity = 74/233 (31.76%), Postives = 110/233 (47.21%), Query Frame = 1 
Query:  844 RAILLVLEHPEVQDPDF-EAVLHTLFKLAARLTKERRDELGAFFEGVEEERFARYLGAVQQFVALRLYSGGCASS----VLPAVHFIHLLYAANKHSRRVKD-EAFYNEAINSELFSDRATLVDDYSKWVQDHHEANPAEFKSLISFGEVLDPASKAAVLSLDSQVQMRGTVNSELQEAMVFGGLAGVGLSAVSPHLKLKVRRSHIVADSLLALVMLAEEDLKKPLSVTFVGE 1524
            RA+ ++L  P + +P   E +L   + L   L  + R  L A +    + +    +    +F+ + +     +      V  AV  + LLYAA++ S    +  AF N+AIN+EL +D   L  D+ +W Q       A   SL +   VL+PA+KA+VL L S  QM          +M    +        SP L L+VRR H++ DSL  L   A E LKKPL V F+GE
Sbjct:  192 RALAILLSCPALVEPQHHETILAKAYSLVEILGSDERAALVAEWAQAPQAQLRHAVRCAHEFIIIAVLENSLSDPIDEPVANAVGALGLLYAASEGSAHALEFSAFTNDAINAELAADETLLRQDHRRWQQ-------ANVFSLCAHAFVLEPAAKASVLKLSSMDQMSSEFEGAFFRSMFTRSMH-------SPFLLLRVRRDHLIRDSLHQLAARAAE-LKKPLKVHFIGE 409
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BLAST of mRNA_L-elsbetiae_contig1703.4712.1 vs. uniprot
Match: A0A7S0JCG4_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JCG4_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 4.370e-15
Identity = 71/239 (29.71%), Postives = 118/239 (49.37%), Query Frame = 1 
Query:  841 LRAILLVLEHPEVQDPDF-EAVLHTLFKLAARLTKERRDELGAFFEGVEEERFARYLGAVQQFVALRLY-SGGCASSVLPAVHFIHLLYAANKHSRR---------VKDEAFYNEAINSELFSDRATLVDDYSKWVQDHHEANPAEFKSLISFGEVLDPASKAAVLSLDSQVQMRGTVNSELQEAMVFGGLAGVGLSAVSPHLKLKVRRSHIVADSLLALVMLAEEDLKKPLSVTFVGE 1524
            +R   +++ +P + +P + + VL  L  L A L      +L  ++  +  E+  + +   QQFV +RLY +     +V      +  LY AN+ + R         +   AFYN+A+N E+      L +DY +W  +  E +  E   +      L+P+SK+ VL  D+  QM       +  ++  G        A SP+L +KVRR+H+++D+LL +  L +EDLKKPL V FV E
Sbjct:  206 VRQFFILMHNPLLLEPQYHKQVLLPLLSLIAVLPDLCSSQLVQWWSFLPAEQLQQMVSVCQQFVTVRLYHTQRIDDAVQAGTQVLGQLYEANEVALRSGRRSSSHPLDYHAFYNDAVNQEV-----NLREDYRRWKSERGEFSFCEHPFI------LEPSSKSRVLMYDATAQMTHEFEGAILRSLFVG--------ATSPYLVVKVRRAHLISDTLLQM-SLRKEDLKKPLKVQFVAE 424
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BLAST of mRNA_L-elsbetiae_contig1703.4712.1 vs. uniprot
Match: V4BVM7_LOTGI (HECT domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BVM7_LOTGI)

HSP 1 Score: 77.4 bits (189), Expect = 2.440e-11
Identity = 69/241 (28.63%), Postives = 111/241 (46.06%), Query Frame = 1 
Query:  829 TKADLRAILLVLEHPEVQDPDFEAVLHTLFKLAARLTKERRDELGAFFEGVEEERFARYLGAVQQFVALRLYS---------GGCASSVLPAVHFIHLLYAANKHSRRVKDEAFYNEAINSELFSDRATLVDDYSKWVQDHHEANPAEFKSLISFGEVLDPASKAAVLSLDSQVQMRGTVNSELQEAMVFGGLAGVGLSAVSPHLKLKVRRSHIVADSLLALVMLAEEDLKKPLSVTFVGE 1524
            +K DLRA +++L++P+ +      +   L +  A L+      L  + + +E +RF   L  +  F+++RL+            C+  +  A   + LL AAN     V   AFYN  +      D   L+ +Y  W    + ++ A F S   +  +L  A+K  +L  DS+ QM       L   +    L  +G+      L LKVRR+H+V+DSL  +    + DLKK L VTF GE
Sbjct:   88 SKDDLRAYIVLLQNPQFRSTTTYVIFAHLLRQIAALSDHDHHFLVHWLKRLERDRFKSLLDRLHNFISVRLFPPKPQDLPPLAKCSWWIPSATKVMALLNAANTVITIVPHTAFYNSTL------DHLDLMAEYYAW---QNPSSHAGF-SFCQYPFILSIAAKRTILQRDSEQQMIIMARKSLVAKVQRRQLPDIGML----FLNLKVRRTHLVSDSLNEIAC-KQHDLKKKLKVTFSGE 313
[Close]
BLAST of mRNA_L-elsbetiae_contig1703.4712.1 vs. uniprot
Match: A0A8H7Q367_MORIS (HECT domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q367_MORIS)

HSP 1 Score: 76.6 bits (187), Expect = 4.260e-11
Identity = 59/188 (31.38%), Postives = 93/188 (49.47%), Query Frame = 1 
Query:  982 EEERFARYLGAVQQFVALRLYSGGCASS-------VLPAVHFIHLLYAANKHSRRVKDEAFYNEAINSELFSDRATLVDDYSKWVQDHHEANPAEFKSLISFGEVLDPASKAAVLSLDSQVQMRGTVNSELQEAMVFGGLAGVGLSAVSPHLKLKVRRSHIVADSLLALVMLAEEDLKKPLSVTFVGE 1524
            E ++F   L  +Q F++ RL +     +       V+     +   +  N+  R VK EAFYN+ +N +L      + DD+ ++          +  S   +  +L+PA+KA +L ++S  QMR     ELQ+A       GV     SP+L L++RR HI+ D+L  L   + +DLKK L V FVGE
Sbjct:  149 EIQQFQYLLDGLQSFISKRLRNKSTPDTTPNRDHAVINTTKCLAAFHRLNEKRRFVKFEAFYNDVLNEQL-----EIKDDFPQF-------KDRKGFSFCDYPFILNPATKADILKVESMFQMR----HELQDAFFRALFQGVN----SPYLVLEIRRDHIIHDTLYQLETKSTQDLKKQLRVQFVGE 316
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1703.4712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0M4S6_9CRYP2.120e-1932.17Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A0M0JDW4_9EUKA2.560e-1733.05Ubiquitin-protein ligase e3a isoform 2 n=1 Tax=Chr... [more]
L8HHG5_ACACA5.860e-1731.40O ubiquitin protein ligase E3A n=1 Tax=Acanthamoeb... [more]
A0A5D6XP60_9STRA9.510e-1734.65HECT domain-containing protein n=1 Tax=Pythium bra... [more]
A0A7S0Q656_9EUKA1.950e-1527.49Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7R9ULG1_DIALT2.360e-1531.76Hypothetical protein n=2 Tax=Diacronema lutheri Ta... [more]
A0A8J5XSP7_DIALT3.230e-1531.76HECT domain-containing protein n=1 Tax=Diacronema ... [more]
A0A7S0JCG4_9EUKA4.370e-1529.71Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
V4BVM7_LOTGI2.440e-1128.63HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A8H7Q367_MORIS4.260e-1131.38HECT domain-containing protein n=1 Tax=Mortierella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1703contigL-elsbetiae_contig1703:13043..17774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score108.2
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog88036.EFJ08655
KEGG koko:K10587
KEGG Pathwayko04120,ko05165,ko05203,map04120,map05165,map05203
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain Homologous to E6-AP Carboxyl Terminus with
EggNOG OGs37QZU@33090,3GX5V@35493,COG5021@1,KOG0941@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons7
Model size1524
Cds size1524
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.5980296-CDS-L-elsbetiae_contig1703:13042..131051622815709.5980296-CDS-L-elsbetiae_contig1703:13042..13105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 13043..13105 -
1691683051.8589942-CDS-L-elsbetiae_contig1703:13042..131051691683051.8589942-CDS-L-elsbetiae_contig1703:13042..13105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 13043..13105 -
1622815709.6126401-CDS-L-elsbetiae_contig1703:13546..136511622815709.6126401-CDS-L-elsbetiae_contig1703:13546..13651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 13547..13651 -
1691683051.8692892-CDS-L-elsbetiae_contig1703:13546..136511691683051.8692892-CDS-L-elsbetiae_contig1703:13546..13651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 13547..13651 -
1622815709.6328642-CDS-L-elsbetiae_contig1703:14013..141361622815709.6328642-CDS-L-elsbetiae_contig1703:14013..14136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 14014..14136 -
1691683051.881158-CDS-L-elsbetiae_contig1703:14013..141361691683051.881158-CDS-L-elsbetiae_contig1703:14013..14136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 14014..14136 -
1622815709.6495197-CDS-L-elsbetiae_contig1703:15188..152961622815709.6495197-CDS-L-elsbetiae_contig1703:15188..15296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 15189..15296 -
1691683051.8897884-CDS-L-elsbetiae_contig1703:15188..152961691683051.8897884-CDS-L-elsbetiae_contig1703:15188..15296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 15189..15296 -
1622815709.6621451-CDS-L-elsbetiae_contig1703:15501..156251622815709.6621451-CDS-L-elsbetiae_contig1703:15501..15625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 15502..15625 -
1691683051.898936-CDS-L-elsbetiae_contig1703:15501..156251691683051.898936-CDS-L-elsbetiae_contig1703:15501..15625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 15502..15625 -
1622815709.676577-CDS-L-elsbetiae_contig1703:15984..161261622815709.676577-CDS-L-elsbetiae_contig1703:15984..16126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 15985..16126 -
1691683051.908824-CDS-L-elsbetiae_contig1703:15984..161261691683051.908824-CDS-L-elsbetiae_contig1703:15984..16126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 15985..16126 -
1622815709.6914315-CDS-L-elsbetiae_contig1703:16915..177741622815709.6914315-CDS-L-elsbetiae_contig1703:16915..17774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 16916..17774 -
1691683051.9216938-CDS-L-elsbetiae_contig1703:16915..177741691683051.9216938-CDS-L-elsbetiae_contig1703:16915..17774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 16916..17774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1703.4712.1prot_L-elsbetiae_contig1703.4712.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1703 13043..17774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1703.4712.1

>prot_L-elsbetiae_contig1703.4712.1 ID=prot_L-elsbetiae_contig1703.4712.1|Name=mRNA_L-elsbetiae_contig1703.4712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=508bp
MSAAASVAVDSTVGCTSVGQEKTVAADNAAVEEASCTSVAGGPVEQEHDD
HDHTCDRQELIAPCRILELVEVCRTTEENFRELIRFLGRTLSDPACVSAS
FALLPPSRAATTTCTNEEARGGQQEWEHEPSGSRPLDIVAGSMGDATSFA
ETNTVGAPEGHPASPNASTTCAATSASSSDGCEWRDRSLVGMDVKAASEV
WKLLVQLDVEGVTGAVLNALDSLTQTLLVQSFLAREATAGQGVATTAAAA
VAVAAAAARAPGGTAREEPGGRGDKDTKADLRAILLVLEHPEVQDPDFEA
VLHTLFKLAARLTKERRDELGAFFEGVEEERFARYLGAVQQFVALRLYSG
GCASSVLPAVHFIHLLYAANKHSRRVKDEAFYNEAINSELFSDRATLVDD
YSKWVQDHHEANPAEFKSLISFGEVLDPASKAAVLSLDSQVQMRGTVNSE
LQEAMVFGGLAGVGLSAVSPHLKLKVRRSHIVADSLLALVMLAEEDLKKP
LSVTFVGE
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mRNA from alignment at L-elsbetiae_contig1703:13043..17774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1703.4712.1 ID=mRNA_L-elsbetiae_contig1703.4712.1|Name=mRNA_L-elsbetiae_contig1703.4712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4732bp|location=Sequence derived from alignment at L-elsbetiae_contig1703:13043..17774- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGCCGCAGCTTCTGTCGCTGTGGATAGCACTGTTGGATGCACTTC
CGTTGGGCAGGAGAAAACTGTGGCAGCTGATAACGCCGCCGTGGAAGAAG
CTTCTTGCACGTCTGTTGCCGGTGGTCCGGTGGAGCAAGAACATGACGAT
CATGATCATACTTGTGACCGGCAAGAACTCATCGCTCCATGCCGAATCCT
GGAGCTTGTCGAAGTGTGCCGCACCACCGAGGAAAACTTTCGGGAGCTCA
TCCGCTTCCTAGGCAGGACCCTTTCTGACCCGGCTTGCGTATCAGCCAGC
TTTGCTCTACTGCCACCATCGAGAGCCGCCACCACTACGTGTACCAACGA
GGAGGCACGAGGAGGCCAGCAGGAGTGGGAGCACGAGCCGTCTGGGTCCC
GGCCACTGGATATTGTTGCGGGATCCATGGGTGATGCCACCAGCTTCGCA
GAAACGAACACCGTCGGGGCACCGGAAGGACACCCCGCGTCACCCAACGC
CTCCACTACATGCGCCGCAACCAGCGCCAGCAGTAGCGACGGGTGCGAGT
GGAGAGACCGGTCCTTGGTAGGGATGGACGTCAAAGCGGCATCGGAGGTG
TGGAAGCTGCTTGTTCAGCTGGATGTGGAAGGCGTGACCGGCGCCGTCTT
GAACGCGCTAGACTCGCTGACCCAAACGCTGCTCGTCCAGAGCTTTCTAG
CACGTGAGGCGACGGCGGGCCAAGGAGTCGCGACAACGGCGGCGGCGGCG
GTGGCGGTGGCGGCGGCGGCAGCACGAGCACCCGGCGGGACTGCCCGCGA
GGAGCCCGGGGGCCGCGGCGACAAAGACACGAAGGCAGACCTTCGAGCCA
TATTATTGGGTGAGCACGCACCGCCCGTGCCACTTTCTGTTGCGCTACAG
CTTGTGAAGAGGACAGACGGCACCACCCCGCCTTTTAAACGCGTTGCCGC
GCTGTGGGCAGCGCCCATTCGACAGTCCAATTGCCCGATTGCAACCCTGC
TGCCGCTTTCTGCTACTTTTTTTCACCTTGCGACCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCTTCCACCGCACCATCCCCCCCCGCTCCCCCCCCCCGC
TGCCCTCTTCTTTTTTTTTTCCCCCTCCCCCCCCCCCCCCCCCCCCCTCG
TTCCGCGTTTACGCACACATTTCTAGAGCTCGCCAAAGTCCTGCTTCATA
TGTATGTATGTACATTGTAAGAGGCCGTTCGTTGTGAGTCATTCCCAGCC
GACTCAGTGTAGCTTTTCAATTTCCAGGTGTGGTTTTCATGAAGGCGTGC
GGGTCACGGCACCAGCACGAGAGCTGGTGCCAACAATCCACACCAAGGAT
GGTCGGTTCCCGTGGTCACAGGCTATCTTACCCTAAAAGGGTAGCGCTGA
AGAAGAATGATACATTTTAGTTTTGAAAGCAAGAGAGAGGGAGAGAGAGA
GATGACAGATGACAGATGACAGATGAAATAAAAGACCGAGGGAAAAAATA
AGAACGCTACATACATACGGTACTCCAGGATATCTGTGCTGCAGCAAACC
CGACCGCCCCTTAAAATAGCGGAAGGTTAAAACTCACATTGATTTCACGC
CGCCCCCTCGGGGGCTGTTCACTGTTGTTCTCCGCGGTCTTGCCACAGTC
CTTGAGCATCCGGAGGTCCAAGATCCAGACTTCGAGGCGGTCCTGCACAC
CCTGTTCAAGCTCGCAGCCAGGCTAACCAAGGAGCGGAGAGACGAGCTCG
GTGCTTTTTTCGAAGGCGTGGAGGAGGAACGATTCGCCAGGTGTGGGTAC
GGTTCGGTACGCACTAGTTTACTGTCTGGACTGTTTTTGCGTGGGCGTTG
TTTCATTTGATTCGCCCTTGGCAGAACTCACGAGATGCGGCGCCCTTCGC
TTCCCGTCCGTCCTTTCAAGCTCCGAAAAGCAACGCGTTGGCTGAACTAC
ATACGTGCGTATTTTTTTTTCCGCCGCGTGCGCCCCATGATAATACGTAC
ACATCCGGAAAACTGCGAGAGGGTGAGGCGTCCTACACCAAACACACGCC
ACTCAAATCACCACGCCTCTCTCTTCTCGACGCTGCGCACTCACACCGCC
CTACTGCTGCCTACACACGTGACGTGGGCGCGCGCGCGTGTGTTTTCAGG
TACTTGGGTGCCGTGCAGCAGTTTGTGGCGCTCCGGCTGTACTCGGGGGG
GTGCGCCTCTTCCGTGCTGCCGGCGGTGCACTTCATACACCTACTCTACG
CGGCCAACAAGCACAGTCGCAGGGTGAGGCGGGTCGATCACAGTTCACCC
CGTGACAGGGTGCACCGACAGCAGGTTATATTTTCGTTTTCTCGGTGGTG
TGCCTCTGGTGTCTTGTCCTATCGACCAATCATCGTCCCACGGTCGTTTT
CGCGGCGCTAGAGCCGGTCGCGGCGGTGTCACCACTGCTTGCTACCCTTG
CTTGCCTGCTTGCTTGCTTGCTTTGCAGGTGAAAGACGAGGCGTTCTACA
ACGAGGCGATCAACTCGGAGCTGTTCTCGGATCGCGCGACCCTTGTCGAC
GACTACAGCAAGTGGGTGCAAGACCACCACGAAGCGGTGAGCGTATGGTA
TGATAGCTCAGCGTGTGCCTTTTTCAGCGTGTGTTTTGGCAAGCTTGTCG
CTCTCGACATTCTCGCTGCGGGCCGCCCTCCCTGTCTTCCCATAAATGCG
TCTCAACAGCTCTTTTCCGGGATTTTTGGCGTCCTGTCATGCCAGTGCGA
CGGGAGTTACATCGCACCTTGACGTGGGCTGCTTCGATCCCGCTACGAAC
ACACGTGCTGAACGTGCCAGCCCCCACGGATGTGCTCATCCATTTCCGTG
CTGTGTTTGTATGGGCGGGCCCCGCCTCACTTCCAATTCCTATTCCTTGA
CCTCATATTTTGGAAGAGAGATCGAAGGAGACCCCTTGCTATTTAGCTTT
GAATTCCTCATTCCCTCCGAAGCTACTAGACTATGTACTGGTATGTCTTC
TCTCCTCGTCTGCAAGGTATAGCAACAGCCGCCTGCTGTGCTTTTGAGCC
TGTCGAAGGCGTAGCCGCGAACCCCTCCCCCCTCTCCCCCCTAAAGGAGC
CGCCGTCGTGGCGGCGGAGTTACCCTCGGCGTAAGATCCCTCGGGGCTGC
CGCACAAAAGACAAGCCCGACGAAGTCTGCCCGCCCTTGTGCCTCTTTTT
TTTTCGATTTTCACAGCCCGTGAAATGACTGCACGAAGCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCACAGCGCTCGCCCAGGGGGGGGGGGGCGGCGGT
GCGGTGGTGTGNNNNNNNNNNAACGACCCCCCCCCGCGGCCCCCCCCCCC
CTCCCCCCCCTTTTTTTTTGTGCCTCCCCCGCGGGGAGAACGCCCCCCCC
CCCCCCCCCCCCCCCCCCCAGTGTTCGAAGAGCGCGATTACCGTAGTGGG
GCAACGAGCTTCTGTGGTTGCGTGGCCGGCCGGGCTCGCCTCGAAGGATG
CGAGTGTTTCCCCCTCGACGTGCCATGGCCACTAGCGTGCCTCTCTACTT
TTTCAGTCCATGTCCCCGTTGTCGTCGTCGTTGCATGCTCTGTCTGTGTG
TAACCACCGGGCTTCTTCTGTGCTCGGATCACGTGCAGAACCCCGCGGAG
TTCAAGAGTCTGATCTCCTTCGGAGAGGTATTGGACCCCGCCAGCAAGGC
CGCGGTTCTCAGCCTGGACAGCCAGGTCCAGATGAGGGGCACCGTGAACA
GCGAGCTGCAGGTTGGCGGGGGGTATGGCCGGTTCGGGGCGACGTGAGGC
AGTGTTTTTTTTTTTTTGTTTGCGGGGGTAGGGTGGTACAACGAGCACCG
TACAGCCCACGCGTTGATGATGAATTCCAGAAGAACCGTTTCGTGTTGCG
GTTTGTTTTGGTGAGTGCCTGTTTGCGCCCATCCAGCAGACCGAATTTCG
CATTTGTTTGTCTCTCTTCTTTTGCCCCTCTTTTTTTCCCCTTTGCTTTT
CTCGAACTTGTTTCCTTTTTTTCGGTTCGGTTCGGTTCGGTTCGGTTCGG
TTCGGTTCGGTTCGGTTCGGCGCGGCGGGGCGGGGGTGCGGGATGGTGAT
GGGGGCGCCGCCATTTCGACCAGGAGGCCATGGTGTTTGGGGGGCTCGCC
GGTGTCGGCTTGTCGGCTGTGTCACCGCATCTGAAGCTCAAAGTTAGGAG
GAGCCACATCGTTGCGGATTCGCTGCTCGTGAGTTCTTGTCGGCATGTTG
TGTTCTATCGTATATAGTTGATGGTGCCATGGTCGTCGTCGTTACTTTCA
TGGGTGGTGGCCGGACTACGGTATGGTATGGCTTAGTGTCAAACGGTAAC
ACGATGTCGGGCCGAGTCCGTTGACGGCTGGACGAGCTCCTTGTTTTCAT
GTTCTAGTCTTGGTAGCCGAGGTTGAGTCGAAAGAGGCAAAAAGAAGCCG
CCCAAAAACGATCGGTGTTGTGCCGGGCTCTTTCTTCAAGTCCGAAAAGG
CTACGTACAGGGGTGTGCTGAGACCGCATGTTCACCATCTAGCTTGTTCG
TCTTCTCCTGCGTTTAATCACCCCCACCCCACACCCCCACCCCTCAGCTG
TGTTGTCTGCGACCCCCCCGCCCTGTTTTCATGCGCAATGCTCACACGCC
CATCAAACGGTGCTAAAAGGCGCTGGTGATGCTTGCGGAGGAAGACCTGA
AGAAGCCGCTTAGCGTGACGTTTGTGGGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1703:13043..17774-

>mRNA_L-elsbetiae_contig1703.4712.1 ID=mRNA_L-elsbetiae_contig1703.4712.1|Name=mRNA_L-elsbetiae_contig1703.4712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3048bp|location=Sequence derived from alignment at L-elsbetiae_contig1703:13043..17774- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGCCGCAGCTTCTGTCGCTGTGGATAGCACTGTTGGATGCACTTC
CGTTGGGCAGGAGAAAACTGTGGCAGCTGATAACGCCGCCGTGGAAGAAG
CTTCTTGCACGTCTGTTGCCGGTGGTCCGGTGGAGCAAGAACATGACGAT
CATGATCATACTTGTGACCGGCAAGAACTCATCGCTCCATGCCGAATCCT
GGAGCTTGTCGAAGTGTGCCGCACCACCGAGGAAAACTTTCGGGAGCTCA
TCCGCTTCCTAGGCAGGACCCTTTCTGACCCGGCTTGCGTATCAGCCAGC
TTTGCTCTACTGCCACCATCGAGAGCCGCCACCACTACGTGTACCAACGA
GGAGGCACGAGGAGGCCAGCAGGAGTGGGAGCACGAGCCGTCTGGGTCCC
GGCCACTGGATATTGTTGCGGGATCCATGGGTGATGCCACCAGCTTCGCA
GAAACGAACACCGTCGGGGCACCGGAAGGACACCCCGCGTCACCCAACGC
CTCCACTACATGCGCCGCAACCAGCGCCAGCAGTAGCGACGGGTGCGAGT
GGAGAGACCGGTCCTTGGTAGGGATGGACGTCAAAGCGGCATCGGAGGTG
TGGAAGCTGCTTGTTCAGCTGGATGTGGAAGGCGTGACCGGCGCCGTCTT
GAACGCGCTAGACTCGCTGACCCAAACGCTGCTCGTCCAGAGCTTTCTAG
CACGTGAGGCGACGGCGGGCCAAGGAGTCGCGACAACGGCGGCGGCGGCG
GTGGCGGTGGCGGCGGCGGCAGCACGAGCACCCGGCGGGACTGCCCGCGA
GGAGCCCGGGGGCCGCGGCGACAAAGACACGAAGGCAGACCTTCGAGCCA
TATTATTGGATGTCCGCCGCAGCTTCTGTCGCTGTGGATAGCACTGTTGG
ATGCACTTCCGTTGGGCAGGAGAAAACTGTGGCAGCTGATAACGCCGCCG
TGGAAGAAGCTTCTTGCACGTCTGTTGCCGGTGGTCCGGTGGAGCAAGAA
CATGACGATCATGATCATACTTGTGACCGGCAAGAACTCATCGCTCCATG
CCGAATCCTGGAGCTTGTCGAAGTGTGCCGCACCACCGAGGAAAACTTTC
GGGAGCTCATCCGCTTCCTAGGCAGGACCCTTTCTGACCCGGCTTGCGTA
TCAGCCAGCTTTGCTCTACTGCCACCATCGAGAGCCGCCACCACTACGTG
TACCAACGAGGAGGCACGAGGAGGCCAGCAGGAGTGGGAGCACGAGCCGT
CTGGGTCCCGGCCACTGGATATTGTTGCGGGATCCATGGGTGATGCCACC
AGCTTCGCAGAAACGAACACCGTCGGGGCACCGGAAGGACACCCCGCGTC
ACCCAACGCCTCCACTACATGCGCCGCAACCAGCGCCAGCAGTAGCGACG
GGTGCGAGTGGAGAGACCGGTCCTTGGTAGGGATGGACGTCAAAGCGGCA
TCGGAGGTGTGGAAGCTGCTTGTTCAGCTGGATGTGGAAGGCGTGACCGG
CGCCGTCTTGAACGCGCTAGACTCGCTGACCCAAACGCTGCTCGTCCAGA
GCTTTCTAGCACGTGAGGCGACGGCGGGCCAAGGAGTCGCGACAACGGCG
GCGGCGGCGGTGGCGGTGGCGGCGGCGGCAGCACGAGCACCCGGCGGGAC
TGCCCGCGAGGAGCCCGGGGGCCGCGGCGACAAAGACACGAAGGCAGACC
TTCGAGCCATATTATTGGTCCTTGAGCATCCGGAGGTCCAAGATCCAGAC
TTCGAGGCGGTCCTGCACACCCTGTTCAAGCTCGCAGCCAGGCTAACCAA
GGAGCGGAGAGACGAGCTCGGTGCTTTTTTCGAAGGCGTGGAGGAGGAAC
GATTCGCCAGTCCTTGAGCATCCGGAGGTCCAAGATCCAGACTTCGAGGC
GGTCCTGCACACCCTGTTCAAGCTCGCAGCCAGGCTAACCAAGGAGCGGA
GAGACGAGCTCGGTGCTTTTTTCGAAGGCGTGGAGGAGGAACGATTCGCC
AGGTACTTGGGTGCCGTGCAGCAGTTTGTGGCGCTCCGGCTGTACTCGGG
GGGGTGCGCCTCTTCCGTGCTGCCGGCGGTGCACTTCATACACCTACTCT
ACGCGGCCAACAAGCACAGTCGCAGGGTACTTGGGTGCCGTGCAGCAGTT
TGTGGCGCTCCGGCTGTACTCGGGGGGGTGCGCCTCTTCCGTGCTGCCGG
CGGTGCACTTCATACACCTACTCTACGCGGCCAACAAGCACAGTCGCAGG
GTGAAAGACGAGGCGTTCTACAACGAGGCGATCAACTCGGAGCTGTTCTC
GGATCGCGCGACCCTTGTCGACGACTACAGCAAGTGGGTGCAAGACCACC
ACGAAGCGGTGAAAGACGAGGCGTTCTACAACGAGGCGATCAACTCGGAG
CTGTTCTCGGATCGCGCGACCCTTGTCGACGACTACAGCAAGTGGGTGCA
AGACCACCACGAAGCGAACCCCGCGGAGTTCAAGAGTCTGATCTCCTTCG
GAGAGGTATTGGACCCCGCCAGCAAGGCCGCGGTTCTCAGCCTGGACAGC
CAGGTCCAGATGAGGGGCACCGTGAACAGCGAGCTGCAGAACCCCGCGGA
GTTCAAGAGTCTGATCTCCTTCGGAGAGGTATTGGACCCCGCCAGCAAGG
CCGCGGTTCTCAGCCTGGACAGCCAGGTCCAGATGAGGGGCACCGTGAAC
AGCGAGCTGCAGGAGGCCATGGTGTTTGGGGGGCTCGCCGGTGTCGGCTT
GTCGGCTGTGTCACCGCATCTGAAGCTCAAAGTTAGGAGGAGCCACATCG
TTGCGGATTCGCTGCTCGAGGCCATGGTGTTTGGGGGGCTCGCCGGTGTC
GGCTTGTCGGCTGTGTCACCGCATCTGAAGCTCAAAGTTAGGAGGAGCCA
CATCGTTGCGGATTCGCTGCTCGCGCTGGTGATGCTTGCGGAGGAAGACC
TGAAGAAGCCGCTTAGCGTGACGTTTGTGGGGGAGGCGCTGGTGATGCTT
GCGGAGGAAGACCTGAAGAAGCCGCTTAGCGTGACGTTTGTGGGGGAG
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