mRNA_L-elsbetiae_contig1701.4696.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1701.4696.1
Unique NamemRNA_L-elsbetiae_contig1701.4696.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1701.4696.1 vs. uniprot
Match: A0A6H5KQZ1_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.230e-30
Identity = 82/151 (54.30%), Postives = 97/151 (64.24%), Query Frame = -1 
Query:   10 AADDTARILPTYQARAETADCLVAASSATARGLATRAVALIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXAAELVTAKLSRAAIRVVWALARGPSSATLAAHGTLPRLMDRTSSSRXXXXXXXG----LRKDPAAGVLVLDTMAAFLSREE 450
            AAD+  R+LP YQARA+TA+CL+AA+SAT+RGLATRAVAL+                             +  L +AKL+RAAIRVVW+L+RGPSSATLAAHGTLPRLM R S  R       G     R D AAGVLVLDT+AAFLS E+
Sbjct:  688 AADEVDRVLPAYQARAQTANCLLAAASATSRGLATRAVALL--------------DAGGSSGGGGFISTDSEALSSAKLTRAAIRVVWSLSRGPSSATLAAHGTLPRLMGRMSCLRLKGSGGGGGADRARGDTAAGVLVLDTIAAFLSLED 824
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BLAST of mRNA_L-elsbetiae_contig1701.4696.1 vs. uniprot
Match: D7FT64_ECTSI (E3 ubiquitin-protein ligase Nedd-4, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT64_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.650e-16
Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = -1 
Query:   10 LVTAKLSRAAIRVVWALARGPSSATLAAHGTLPRLMDRTSSSRXXXXXXXGL---RKDPAAGVLVLDTMAAFLSREE 231
            L +AKL+RAAIRVVW+L+RGPSSATLAAHGTLPRLM   S  R       G    R D AAGVLVLDT+AAFLS E+
Sbjct:  762 LSSAKLTRAAIRVVWSLSRGPSSATLAAHGTLPRLMGHMSCLRRKGSGGGGADGARGDTAAGVLVLDTIAAFLSLED 838
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1701.4696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQZ1_9PHAE3.230e-3054.30FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FT64_ECTSI1.650e-1666.23E3 ubiquitin-protein ligase Nedd-4, putative n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1701contigL-elsbetiae_contig1701:20969..21443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size476
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.2365978-CDS-L-elsbetiae_contig1701:20968..214421622815708.2365978-CDS-L-elsbetiae_contig1701:20968..21442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 20969..21442 +
1691683051.0983455-CDS-L-elsbetiae_contig1701:20968..214421691683051.0983455-CDS-L-elsbetiae_contig1701:20968..21442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 20969..21442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1701.4696.1prot_L-elsbetiae_contig1701.4696.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1701 20969..21442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1701.4696.1

>prot_L-elsbetiae_contig1701.4696.1 ID=prot_L-elsbetiae_contig1701.4696.1|Name=mRNA_L-elsbetiae_contig1701.4696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
AAPFLAAQERRHRVEHEHPRRRVFPEPAAPAPPAARGRRAVHQAGEGAVG
GEGRRGRSPRQGPHNSDGRSAQLCRHQLRGAVAVAVAAPRRRKPTAVRRK
GGRPAAAAANQCYRPSRQPPCRCGRGRHQAVGRLGAGLVGRQDPGGVVGG
RPCGRRRR
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mRNA from alignment at L-elsbetiae_contig1701:20969..21443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1701.4696.1 ID=mRNA_L-elsbetiae_contig1701.4696.1|Name=mRNA_L-elsbetiae_contig1701.4696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=475bp|location=Sequence derived from alignment at L-elsbetiae_contig1701:20969..21443+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCCCTTTCCTCGCGGCTCAAGAACGCCGCCATCGTGTCGAGCACGA
GCACCCCCGCCGCCGGGTCTTTCCTGAGCCCGCCGCCCCCGCTCCCCCGG
CGGCGCGAGGACGACGTGCGGTCCATCAGGCGGGGGAGGGTGCCGTGGGC
GGCGAGGGTCGCCGAGGACGGTCCCCTCGCCAAGGCCCACACAACTCGGA
TGGCCGCTCGGCTCAACTTTGCCGTCACCAACTCCGCGGCGCCGTAGCCG
TAGCCGTAGCCGCCCCCCGTCGCCGAAAACCCACTGCCGTTCGAAGAAAA
GGAGGCCGACCCGCCGCCGCCGCCGCCAATCAATGCTACCGCCCGAGTCG
CCAGCCCCCGTGCCGTTGCGGAAGAGGCCGCCACCAAGCAGTCGGCCGTC
TCGGCGCGGGCTTGGTAGGTCGGCAAGATCCGGGCGGTGTCGTCGGCGGC
CGACCGTGCGGGCGCCGCCGCCGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1701:20969..21443+

>mRNA_L-elsbetiae_contig1701.4696.1 ID=mRNA_L-elsbetiae_contig1701.4696.1|Name=mRNA_L-elsbetiae_contig1701.4696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig1701:20969..21443+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCCCTTTCCTCGCGGCTCAAGAACGCCGCCATCGTGTCGAGCACGA
GCACCCCCGCCGCCGGGTCTTTCCTGAGCCCGCCGCCCCCGCTCCCCCGG
CGGCGCGAGGACGACGTGCGGTCCATCAGGCGGGGGAGGGTGCCGTGGGC
GGCGAGGGTCGCCGAGGACGGTCCCCTCGCCAAGGCCCACACAACTCGGA
TGGCCGCTCGGCTCAACTTTGCCGTCACCAACTCCGCGGCGCCGTAGCCG
TAGCCGTAGCCGCCCCCCGTCGCCGAAAACCCACTGCCGTTCGAAGAAAA
GGAGGCCGACCCGCCGCCGCCGCCGCCAATCAATGCTACCGCCCGAGTCG
CCAGCCCCCGTGCCGTTGCGGAAGAGGCCGCCACCAAGCAGTCGGCCGTC
TCGGCGCGGGCTTGGTAGGTCGGCAAGATCCGGGCGGTGTCGTCGGCGGC
CGACCGTGCGGGCGCCGCCGCCGTGCCGCCCCTTTCCTCGCGGCTCAAGA
ACGCCGCCATCGTGTCGAGCACGAGCACCCCCGCCGCCGGGTCTTTCCTG
AGCCCGCCGCCCCCGCTCCCCCGGCGGCGCGAGGACGACGTGCGGTCCAT
CAGGCGGGGGAGGGTGCCGTGGGCGGCGAGGGTCGCCGAGGACGGTCCCC
TCGCCAAGGCCCACACAACTCGGATGGCCGCTCGGCTCAACTTTGCCGTC
ACCAACTCCGCGGCGCCGTAGCCGTAGCCGTAGCCGCCCCCCGTCGCCGA
AAACCCACTGCCGTTCGAAGAAAAGGAGGCCGACCCGCCGCCGCCGCCGC
CAATCAATGCTACCGCCCGAGTCGCCAGCCCCCGTGCCGTTGCGGAAGAG
GCCGCCACCAAGCAGTCGGCCGTCTCGGCGCGGGCTTGGTAGGTCGGCAA
GATCCGGGCGGTGTCGTCGGCGGCCGACCGTGCGGGCGCCGCCGCCGT
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