mRNA_L-elsbetiae_contig17.4681.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17.4681.1
Unique NamemRNA_L-elsbetiae_contig17.4681.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17.4681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17contigL-elsbetiae_contig17:35906..36473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size310
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.343032-CDS-L-elsbetiae_contig17:35906..359541622815706.343032-CDS-L-elsbetiae_contig17:35906..35954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 35907..35954 -
1691683049.7358093-CDS-L-elsbetiae_contig17:35906..359541691683049.7358093-CDS-L-elsbetiae_contig17:35906..35954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 35907..35954 -
1622815706.3566735-CDS-L-elsbetiae_contig17:36212..364731622815706.3566735-CDS-L-elsbetiae_contig17:36212..36473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 36213..36473 -
1691683049.7464392-CDS-L-elsbetiae_contig17:36212..364731691683049.7464392-CDS-L-elsbetiae_contig17:36212..36473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 36213..36473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17.4681.1prot_L-elsbetiae_contig17.4681.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17 35907..36473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17.4681.1

>prot_L-elsbetiae_contig17.4681.1 ID=prot_L-elsbetiae_contig17.4681.1|Name=mRNA_L-elsbetiae_contig17.4681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
YTRASHLFDEELSEGHASETGSRLHDLQQQRQAAEAIAIHLWCFCHSVAL
PLQLLPVQREGGKRCRRRPKEIVPTLPTLPTRKNLKQVQWNSLVVLFVHA
RSR
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mRNA from alignment at L-elsbetiae_contig17:35906..36473-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17.4681.1 ID=mRNA_L-elsbetiae_contig17.4681.1|Name=mRNA_L-elsbetiae_contig17.4681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=568bp|location=Sequence derived from alignment at L-elsbetiae_contig17:35906..36473- (Laminarionema elsbetiae ELsaHSoW15)
TATACTCGTGCGTCACATCTCTTTGATGAGGAACTTAGTGAGGGTCATGC
CTCGGAGACAGGCAGCCGGCTTCACGATCTACAGCAGCAACGCCAAGCAG
CAGAAGCAATCGCAATTCATCTGTGGTGCTTTTGCCACAGCGTTGCATTA
CCACTTCAGCTGCTGCCGGTCCAAAGAGAGGGAGGCAAGCGCTGCAGGCG
CCGGCCGAAGGAGATCGTCCCCACCCTCCCCACCCTCCCCACACGCAAAA
ACCTGAAACAGGTGGGTGTACGCTCGTTATTGCTAGCTGCTACACTTGCT
ACTGACGGCTGAATGTGGTGCGTGCCTATCCAAGGTCGGCCACAGCAGTC
GTCACACGCAAGGAACTTCCCAGTGTAGCTTGCAAAAGACAAAATGCAAA
ATGCGGGAGGATTCGGGATCTTCACCCACTTTCTGTTTTCTTCGTGCTTA
CGCTGCCGGTGAAAACTCATGTTATACCTGACGCATGATGTCCGTGTCGG
TGTCGGTTATCGTTGCCAGGTGCAGTGGAACAGCCTTGTGGTGCTCTTCG
TCCACGCGCGCTCACGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17:35906..36473-

>mRNA_L-elsbetiae_contig17.4681.1 ID=mRNA_L-elsbetiae_contig17.4681.1|Name=mRNA_L-elsbetiae_contig17.4681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig17:35906..36473- (Laminarionema elsbetiae ELsaHSoW15)
TATACTCGTGCGTCACATCTCTTTGATGAGGAACTTAGTGAGGGTCATGC
CTCGGAGACAGGCAGCCGGCTTCACGATCTACAGCAGCAACGCCAAGCAG
CAGAAGCAATCGCAATTCATCTGTGGTGCTTTTGCCACAGCGTTGCATTA
CCACTTCAGCTGCTGCCGGTCCAAAGAGAGGGAGGCAAGCGCTGCAGGCG
CCGGCCGAAGGAGATCGTCCCCACCCTCCCCACCCTCCCCACACGCAAAA
ACCTGAAACAGTATACTCGTGCGTCACATCTCTTTGATGAGGAACTTAGT
GAGGGTCATGCCTCGGAGACAGGCAGCCGGCTTCACGATCTACAGCAGCA
ACGCCAAGCAGCAGAAGCAATCGCAATTCATCTGTGGTGCTTTTGCCACA
GCGTTGCATTACCACTTCAGCTGCTGCCGGTCCAAAGAGAGGGAGGCAAG
CGCTGCAGGCGCCGGCCGAAGGAGATCGTCCCCACCCTCCCCACCCTCCC
CACACGCAAAAACCTGAAACAGGTGCAGTGGAACAGCCTTGTGGTGCTCT
TCGTCCACGCGCGCTCACGGGTGCAGTGGAACAGCCTTGTGGTGCTCTTC
GTCCACGCGCGCTCACGG
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