mRNA_L-elsbetiae_contig16922.4642.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16922.4642.1
Unique NamemRNA_L-elsbetiae_contig16922.4642.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16922.4642.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 381 bits (979), Expect = 9.270e-132
Identity = 191/255 (74.90%), Postives = 210/255 (82.35%), Query Frame = 1
Query:    1 MAWATLVKLREALVERAGEIYAERNPPAPGESPIKGEDLTAAQRKSVEADVFEELGNMDQTPVRQEMPVETTLEETGAKDARIATGGKEKERFTLCISVITDGKKVPLRIIYKGTPFIPPDEPGKGTSTQPRNNSIAREILPANRSAKGYPAGGMSFGVQKKSWCDLRECKIWTKDSWKLRPNNGSSTSSALASWCWTTSSATKDEVFIAELKRQTNTIVILVPGGLTPLLQPLDRMLNKQMKRLLRGTYTRHQA 765
            MAWATL+KLREALVERA EIYA RNPPAPGESPIKGEDLT+ Q +SV A+VF ELGNMDQTPV+ EMPVET+LE+TGAKDARIATGGKEKERFTLC++V  D KKVPLR I+KGTP IPPD PGKG +TQPR NSIA E+LP NRS  GYP GGMSFGVQ+KSWCDLRECK+W K SW LRPNNGS                 KD+ FIAELKRQ NTIVI +PGGLTPLLQPLDRMLNK+MKRLLRG YT +Q+
Sbjct:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNYQS 255          
BLAST of mRNA_L-elsbetiae_contig16922.4642.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 377 bits (969), Expect = 6.530e-120
Identity = 187/255 (73.33%), Postives = 210/255 (82.35%), Query Frame = 1
Query:    1 MAWATLVKLREALVERAGEIYAERNPPAPGESPIKGEDLTAAQRKSVEADVFEELGNMDQTPVRQEMPVETTLEETGAKDARIATGGKEKERFTLCISVITDGKKVPLRIIYKGTPFIPPDEPGKGTSTQPRNNSIAREILPANRSAKGYPAGGMSFGVQKKSWCDLRECKIWTKDSWKLRPNNGSSTSSALASWCWTTSSATKDEVFIAELKRQTNTIVILVPGGLTPLLQPLDRMLNKQMKRLLRGTYTRHQA 765
            MAWATL+KLR+AL+ERAGEIYA+R PPAPGESPI+GEDL+++Q + V  ++FEELGNMDQTPV+ EMPVETTLE TGAKDARIATGGKEKERFTLC++V  DGKKVPLRII+KGTPF+PP  PGKG +TQPR NSIA E+LPANRS  G P GGMSFGVQ+KSWCDLRECK+W KDSWKLRPNNGS                 KD+ FIA LKR+ NTIVI +PGGL PL QPLDRMLNKQMKRLLRG YT H A
Sbjct:  217 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAHTA 471          
BLAST of mRNA_L-elsbetiae_contig16922.4642.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 358 bits (918), Expect = 4.780e-118
Identity = 185/281 (65.84%), Postives = 211/281 (75.09%), Query Frame = 1
Query:    1 MAWATLVKLREALVERAGEIYAERNPPAPGESPIKGEDLTAAQRKSVEADVFEELGNMDQTPVRQEMPVETTLEETGAKDARIATG--------------------------GKEKERFTLCISVITDGKKVPLRIIYKGTPFIPPDEPGKGTSTQPRNNSIAREILPANRSAKGYPAGGMSFGVQKKSWCDLRECKIWTKDSWKLRPNNGSSTSSALASWCWTTSSATKDEVFIAELKRQTNTIVILVPGGLTPLLQPLDRMLNKQMKRLLRGTYTRHQA 765
            MAWATL+KLR+AL+ERAGEIYA+R PPAPGESPI+GEDL+++Q + V  ++F++LGNMDQTPV+ EMPVETTLE+TGAKDARIATG                          GKEKERFTLC++V  DG KVPLRII+KGTPF+PP  PGKG +TQPR NSIA E+LPANRS  G P GGMSFGVQ+KSWCDLRE K+W KDSWKLRPNNGS                 KD+ FIA LKR+ NTIVI +PGGLTPLLQPLDRMLNKQMKRLLRG YT H A
Sbjct:  150 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTA 430          
BLAST of mRNA_L-elsbetiae_contig16922.4642.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 348 bits (892), Expect = 3.680e-116
Identity = 180/255 (70.59%), Postives = 200/255 (78.43%), Query Frame = 1
Query:    1 MAWATLVKLREALVERAGEIYAERNPPAPGESPIKGEDLTAAQRKSVEADVFEELGNMDQTPVRQEMPVETTLEETGAKDARIATGGKEKERFTLCISVITDGKKVPLRIIYKGTPFIPPDEPGKGTSTQPRNNSIAREILPANRSAKGYPAGGMSFGVQKKSWCDLRECKIWTKDSWKLRPNNGSSTSSALASWCWTTSSATKDEVFIAELKRQTNTIVILVPGGLTPLLQPLDRMLNKQMKRLLRGTYTRHQA 765
            MAWAT++KLREALV RAGEIYA R+PPAP ESPIKGEDLT  Q  SVEA+VF+ELGNMDQTPV+ EMPVETTLE+TGAKDARI+TGGKEKERFTL ++V+ DGKKV  RII+KGTPFIPP   GKG ST PR NS+A EI PANR+   +PA GMSFGVQ+KSW D REC  W   SWKLRPNNGS                 KDE +IA LKR  NTIVI++PGGLTPLLQPLDRMLNKQMKRLLRG YT + A
Sbjct:   63 MAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSA 317          
BLAST of mRNA_L-elsbetiae_contig16922.4642.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 1.910e-114
Identity = 179/255 (70.20%), Postives = 199/255 (78.04%), Query Frame = 1
Query:    1 MAWATLVKLREALVERAGEIYAERNPPAPGESPIKGEDLTAAQRKSVEADVFEELGNMDQTPVRQEMPVETTLEETGAKDARIATGGKEKERFTLCISVITDGKKVPLRIIYKGTPFIPPDEPGKGTSTQPRNNSIAREILPANRSAKGYPAGGMSFGVQKKSWCDLRECKIWTKDSWKLRPNNGSSTSSALASWCWTTSSATKDEVFIAELKRQTNTIVILVPGGLTPLLQPLDRMLNKQMKRLLRGTYTRHQA 765
            MAWAT++KLREALV+RAGEIYA R+PPAP ESPIKGEDLT+ Q  SVEA+VFEELGNMDQTPV+ E+PVETTLE+TGAKDARI+TGGKEKERFTL ++V+ DGKKV  RII+KGTPF PP   GKG ST PR NS+A EI PANR+  G+PA GMSFGVQ+KSW D REC  W   SWKLRPNNGS                 KDE FIA LKR  NTIVI +PG LTPLLQPLDRMLNKQMKRLLR  YT + A
Sbjct:   63 MAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSA 317          
BLAST of mRNA_L-elsbetiae_contig16922.4642.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 4.270e-111
Identity = 172/250 (68.80%), Postives = 194/250 (77.60%), Query Frame = 1
Query:   16 LVKLREALVERAGEIYAERNPPAPGESPIKGEDLTAAQRKSVEADVFEELGNMDQTPVRQEMPVETTLEETGAKDARIATGGKEKERFTLCISVITDGKKVPLRIIYKGTPFIPPDEPGKGTSTQPRNNSIAREILPANRSAKGYPAGGMSFGVQKKSWCDLRECKIWTKDSWKLRPNNGSSTSSALASWCWTTSSATKDEVFIAELKRQTNTIVILVPGGLTPLLQPLDRMLNKQMKRLLRGTYTRHQA 765
            ++KLREALV+RAGEIYA R+PPAP ESPIKGEDLT+ Q  SVEA+VFE+LGNMDQTPV+ EMPVETTLE+TGAKDAR++TGG+EKERFTL ++V  DGKKV LRII+ GTPFIPP   GKG ST PR NS+A E+ P NR+  G+PA GMSFGVQ+KSW D REC  WT  SWKLRPNNGS                 KDE FIA LKR  NTIVI +PGGLTPLLQPLDRMLNKQ KRLLR  YT + A
Sbjct:    2 VMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSA 251          
BLAST of mRNA_L-elsbetiae_contig16922.4642.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 333 bits (855), Expect = 1.770e-108
Identity = 168/255 (65.88%), Postives = 196/255 (76.86%), Query Frame = 1
Query:    1 MAWATLVKLREALVERAGEIYAERNPPAPGESPIKGEDLTAAQRKSVEADVFEELGNMDQTPVRQEMPVETTLEETGAKDARIATGGKEKERFTLCISVITDGKKVPLRIIYKGTPFIPPDEPGKGTSTQPRNNSIAREILPANRSAKGYPAGGMSFGVQKKSWCDLRECKIWTKDSWKLRPNNGSSTSSALASWCWTTSSATKDEVFIAELKRQTNTIVILVPGGLTPLLQPLDRMLNKQMKRLLRGTYTRHQA 765
            MAWATL+KLR+AL+ERAG+IYA+R PPAPGE+PI+GEDL+++Q + V  ++FEELGNMDQTPV+ E PVE   +    +  R       +ERFTLC++V  DGKKVPLRII+KGTPF+PP  PGKG +TQPR NSIA E+LPANRS  G P GGMSFGVQ+KSWCDLRECK+W KDSWKLRPNNGS                 KD+ FIA LKR+ NTIVI +PGGLTPLLQPLDRMLNKQMKRLLRG YT H A
Sbjct:  187 MAWATLMKLRKALLERAGKIYAQRYPPAPGENPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHETPVERLWK----RPVRRMPASPPEERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTA 437          
BLAST of mRNA_L-elsbetiae_contig16922.4642.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 333 bits (855), Expect = 4.260e-108
Identity = 176/263 (66.92%), Postives = 196/263 (74.52%), Query Frame = 1
Query:    1 MAWATLVKLREALVERAGEIYAERNPPAPGESPIKGEDLTAAQRKSVEADVFEELGNMDQTPVRQEMPVETTLEETGAKDARIATGGKEKERFTLCISVITDGKKVPLRIIYKGTPFIPPDEPGKGTSTQPRNNSIAREILPANRSAKGYPAGGMSFGVQKKSWCDLRECKIWTKDSWKL--------RPNNGSSTSSALASWCWTTSSATKDEVFIAELKRQTNTIVILVPGGLTPLLQPLDRMLNKQMKRLLRGTYTRHQA 765
            MAWAT+ KLREALV+RAGEIYA R+PPAP ESPIKGEDLT+ Q  SVEA+VFEELGNMDQTPV+ EMPVETTLE+TG KDARI+TGGKEKERFTL ++V+ DGK V   II+KGTPFIPP   GKG ST PR NS+A E+ PANR+  G+PA GMSFGVQ+KSW   +EC  W   SWKL        RPNNGS                 KDE FIA L R  NTIVI +PGGLTPLLQPLDRMLNKQMKRLLRG YT + A
Sbjct:  217 MAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSA 479          
BLAST of mRNA_L-elsbetiae_contig16922.4642.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 3.870e-106
Identity = 172/252 (68.25%), Postives = 194/252 (76.98%), Query Frame = 1
Query:    1 MAWATLVKLREALVERAGEIYAERNPPAPGESPIKGEDLTAAQRKSVEADVFEELGNMDQTPVRQEMPVETTLEETGAKDARIATGG-KEKERFTLCISVITDGKKVPLRIIYKGTPFIPPDEPGKGTSTQPRNNSIAREILPANRSAKGYPAGGMSFGVQKKSWCDLRECKIWTKDSWKLRPNNGSSTSSALASWCWTTSSATKDEVFIAELKRQTNTIVILVPGGLTPLLQPLDRMLNKQMKRLLRGTYT 753
            MAWAT++KL EALV+RAGEIYA R+PPAP ESPIKGEDL + Q  SVEA+VFEE+GNMDQ PV+ EMPVETTL++TGAKDARI+TGG  EKERFTL ++V  DGKKV  RII++GTPFIPP   GKG ST+PR N +A E+ PANR+  G+PA GMSFGVQ+KSW D REC  W   SWKLRPNNGS                  DE FIA LKR  NTIVI +PGGLTPLLQPLDRMLNKQMKRLLRG YT
Sbjct:  257 MAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYT 508          
BLAST of mRNA_L-elsbetiae_contig16922.4642.1 vs. uniprot
Match: D7G5E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E8_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 4.430e-103
Identity = 149/186 (80.11%), Postives = 163/186 (87.63%), Query Frame = 1
Query:    1 MAWATLVKLREALVERAGEIYAERNPPAPGESPIKGEDLTAAQRKSVEADVFEELGNMDQTPVRQEMPVETTLEETGAKDARIATGGKEKERFTLCISVITDGKKVPLRIIYKGTPFIPPDEPGKGTSTQPRNNSIAREILPANRSAKGYPAGGMSFGVQKKSWCDLRECKIWTKDSWKLRPNNGS 558
            MAWATL+KLREALVERAGEIYA RNPPAPGESPIKGEDLT+ Q +SV A+VF ELGNMDQTPV+ EM VET LE+TGAKDARIATGGKEKERFTLC++V  DGKKVPLRII+KGTPFIPPD PGKG +TQP  NSIA E+LP NRS  GYP GG SFGVQ+KSWCDLRECK+W K SW LRP+NGS
Sbjct:    1 MAWATLMKLREALVERAGEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMLVETALEKTGAKDARIATGGKEKERFTLCLAVTGDGKKVPLRIIFKGTPFIPPDRPGKGKATQPWKNSIAWEMLPGNRSKNGYPVGGTSFGVQEKSWCDLRECKLWIKHSWTLRPDNGS 186          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16922.4642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXD3_ECTSI9.270e-13274.90DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE6.530e-12073.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE45_9PHAE4.780e-11865.84DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE3.680e-11670.59DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE1.910e-11470.20DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE4.270e-11168.80DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE1.770e-10865.88DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTG5_9PHAE4.260e-10866.92DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE3.870e-10668.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5E8_ECTSI4.430e-10380.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16922contigL-elsbetiae_contig16922:1340..2332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.0
Seed ortholog evalue5.3e-104
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
Ec32 ortholog descriptionDDE superfamily endonuclease, CENP-B-like
Ec32 orthologEc-00_004110.1
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons2
Model size765
Cds size765
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.077226-CDS-L-elsbetiae_contig16922:1339..15981622815703.077226-CDS-L-elsbetiae_contig16922:1339..1598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16922 1340..1598 +
1691683048.0009098-CDS-L-elsbetiae_contig16922:1339..15981691683048.0009098-CDS-L-elsbetiae_contig16922:1339..1598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16922 1340..1598 +
1622815703.0944395-CDS-L-elsbetiae_contig16922:1826..23321622815703.0944395-CDS-L-elsbetiae_contig16922:1826..2332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16922 1827..2332 +
1691683048.015124-CDS-L-elsbetiae_contig16922:1826..23321691683048.015124-CDS-L-elsbetiae_contig16922:1826..2332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16922 1827..2332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16922.4642.1prot_L-elsbetiae_contig16922.4642.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16922 1340..2332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16922.4642.1

>prot_L-elsbetiae_contig16922.4642.1 ID=prot_L-elsbetiae_contig16922.4642.1|Name=mRNA_L-elsbetiae_contig16922.4642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
MAWATLVKLREALVERAGEIYAERNPPAPGESPIKGEDLTAAQRKSVEAD
VFEELGNMDQTPVRQEMPVETTLEETGAKDARIATGGKEKERFTLCISVI
TDGKKVPLRIIYKGTPFIPPDEPGKGTSTQPRNNSIAREILPANRSAKGY
PAGGMSFGVQKKSWCDLRECKIWTKDSWKLRPNNGSSTSSALASWCWTTS
SATKDEVFIAELKRQTNTIVILVPGGLTPLLQPLDRMLNKQMKRLLRGTY
TRHQA
back to top

mRNA from alignment at L-elsbetiae_contig16922:1340..2332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16922.4642.1 ID=mRNA_L-elsbetiae_contig16922.4642.1|Name=mRNA_L-elsbetiae_contig16922.4642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=993bp|location=Sequence derived from alignment at L-elsbetiae_contig16922:1340..2332+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTGGGCGACGTTGGTGAAGCTGCGCGAGGCGCTGGTGGAGCGGGC TGGCGAGATCTACGCTGAGCGCAACCCGCCTGCGCCTGGGGAGAGCCCCA TCAAAGGGGAGGACCTGACCGCCGCGCAGCGGAAGTCGGTGGAAGCGGAC GTGTTCGAAGAACTCGGCAACATGGACCAGACGCCAGTGCGGCAGGAAAT GCCGGTGGAGACAACCCTGGAGGAGACCGGTGCGAAGGATGCTCGCATCG CCACAGGAGGTGAGAGTGTGCCTGCGATGTTGCTGTTTTTCCCCGATAAC CTTGGTGCTCTGCGGATTTGTGGTCGAGCATATTGTTTGTGTTCGTCCTA CGCAAGTTTTGAAATTATTTACCAGGAACAACACTACATCTACCGGTTGC ACCCGTGTCAAATCACATGTTTTGTTCCGCACAATTTTTCAAAAACTCCT CTCCTACCCCCCACGCCGTGCATCCTCTGCCCCTCAGGGAAAGAGAAGGA ACGCTTCACGCTCTGTATTTCTGTCATCACAGACGGCAAGAAGGTCCCGC TGCGCATCATCTACAAGGGGACGCCGTTTATCCCGCCGGACGAGCCCGGG AAGGGCACGTCGACTCAGCCGCGAAATAACTCTATCGCGCGGGAGATCCT TCCTGCCAACCGCTCTGCCAAGGGCTACCCCGCAGGAGGCATGTCCTTCG GCGTGCAGAAGAAGAGCTGGTGTGACCTGCGGGAGTGCAAGATCTGGACC AAGGACAGCTGGAAGCTCCGTCCCAACAACGGAAGCTCGACAAGCAGCGC CCTTGCATCTTGGTGCTGGACGACTTCAAGTGCCACAAAAGACGAGGTCT TTATCGCCGAACTCAAGAGACAGACAAACACCATCGTCATCCTCGTCCCC GGCGGGTTGACTCCTCTCCTCCAGCCGTTGGACCGCATGCTCAACAAGCA GATGAAGCGGCTGCTGCGGGGCACCTACACCCGCCACCAAGCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16922:1340..2332+

>mRNA_L-elsbetiae_contig16922.4642.1 ID=mRNA_L-elsbetiae_contig16922.4642.1|Name=mRNA_L-elsbetiae_contig16922.4642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig16922:1340..2332+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTGGGCGACGTTGGTGAAGCTGCGCGAGGCGCTGGTGGAGCGGGC
TGGCGAGATCTACGCTGAGCGCAACCCGCCTGCGCCTGGGGAGAGCCCCA
TCAAAGGGGAGGACCTGACCGCCGCGCAGCGGAAGTCGGTGGAAGCGGAC
GTGTTCGAAGAACTCGGCAACATGGACCAGACGCCAGTGCGGCAGGAAAT
GCCGGTGGAGACAACCCTGGAGGAGACCGGTGCGAAGGATGCTCGCATCG
CCACAGGAGATGGCGTGGGCGACGTTGGTGAAGCTGCGCGAGGCGCTGGT
GGAGCGGGCTGGCGAGATCTACGCTGAGCGCAACCCGCCTGCGCCTGGGG
AGAGCCCCATCAAAGGGGAGGACCTGACCGCCGCGCAGCGGAAGTCGGTG
GAAGCGGACGTGTTCGAAGAACTCGGCAACATGGACCAGACGCCAGTGCG
GCAGGAAATGCCGGTGGAGACAACCCTGGAGGAGACCGGTGCGAAGGATG
CTCGCATCGCCACAGGAGGGAAAGAGAAGGAACGCTTCACGCTCTGTATT
TCTGTCATCACAGACGGCAAGAAGGTCCCGCTGCGCATCATCTACAAGGG
GACGCCGTTTATCCCGCCGGACGAGCCCGGGAAGGGCACGTCGACTCAGC
CGCGAAATAACTCTATCGCGCGGGAGATCCTTCCTGCCAACCGCTCTGCC
AAGGGCTACCCCGCAGGAGGCATGTCCTTCGGCGTGCAGAAGAAGAGCTG
GTGTGACCTGCGGGAGTGCAAGATCTGGACCAAGGACAGCTGGAAGCTCC
GTCCCAACAACGGAAGCTCGACAAGCAGCGCCCTTGCATCTTGGTGCTGG
ACGACTTCAAGTGCCACAAAAGACGAGGTCTTTATCGCCGAACTCAAGAG
ACAGACAAACACCATCGTCATCCTCGTCCCCGGCGGGTTGACTCCTCTCC
TCCAGCCGTTGGACCGCATGCTCAACAAGCAGATGAAGCGGCTGCTGCGG
GGCACCTACACCCGCCACCAAGCTGGAAAGAGAAGGAACGCTTCACGCTC
TGTATTTCTGTCATCACAGACGGCAAGAAGGTCCCGCTGCGCATCATCTA
CAAGGGGACGCCGTTTATCCCGCCGGACGAGCCCGGGAAGGGCACGTCGA
CTCAGCCGCGAAATAACTCTATCGCGCGGGAGATCCTTCCTGCCAACCGC
TCTGCCAAGGGCTACCCCGCAGGAGGCATGTCCTTCGGCGTGCAGAAGAA
GAGCTGGTGTGACCTGCGGGAGTGCAAGATCTGGACCAAGGACAGCTGGA
AGCTCCGTCCCAACAACGGAAGCTCGACAAGCAGCGCCCTTGCATCTTGG
TGCTGGACGACTTCAAGTGCCACAAAAGACGAGGTCTTTATCGCCGAACT
CAAGAGACAGACAAACACCATCGTCATCCTCGTCCCCGGCGGGTTGACTC
CTCTCCTCCAGCCGTTGGACCGCATGCTCAACAAGCAGATGAAGCGGCTG
CTGCGGGGCACCTACACCCGCCACCAAGCT
back to top