mRNA_L-elsbetiae_contig16917.4637.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16917.4637.1
Unique NamemRNA_L-elsbetiae_contig16917.4637.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16917.4637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16917contigL-elsbetiae_contig16917:313..1534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size270
Cds size270
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.78465-CDS-L-elsbetiae_contig16917:312..4991622815702.78465-CDS-L-elsbetiae_contig16917:312..499Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16917 313..499 +
1691683047.8445373-CDS-L-elsbetiae_contig16917:312..4991691683047.8445373-CDS-L-elsbetiae_contig16917:312..499Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16917 313..499 +
1622815702.7988477-CDS-L-elsbetiae_contig16917:1451..15341622815702.7988477-CDS-L-elsbetiae_contig16917:1451..1534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16917 1452..1534 +
1691683047.8589063-CDS-L-elsbetiae_contig16917:1451..15341691683047.8589063-CDS-L-elsbetiae_contig16917:1451..1534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16917 1452..1534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16917.4637.1prot_L-elsbetiae_contig16917.4637.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16917 313..1534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16917.4637.1

>prot_L-elsbetiae_contig16917.4637.1 ID=prot_L-elsbetiae_contig16917.4637.1|Name=mRNA_L-elsbetiae_contig16917.4637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MVGFMQQQQPQQLFFFFFIGGTACCGLCISSPPFLPQWRVPSCTSALLED
GSGSSRFYSMPAAAKNDGKRANKTRLTESTGKLIEEGRGK
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mRNA from alignment at L-elsbetiae_contig16917:313..1534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16917.4637.1 ID=mRNA_L-elsbetiae_contig16917.4637.1|Name=mRNA_L-elsbetiae_contig16917.4637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1222bp|location=Sequence derived from alignment at L-elsbetiae_contig16917:313..1534+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTGGTTTCATGCAGCAGCAGCAGCCGCAGCAGCTGTTTTTTTTTTT
TTTTATCGGGGGCACCGCCTGCTGTGGGCTTTGTATCAGCAGCCCTCCGT
TTTTGCCCCAGTGGCGAGTCCCCTCCTGCACCTCCGCTCTGCTGGAGGAT
GGCAGCGGTAGTTCGCGCTTTTACTCCATGCCCGCAGGTATGTAGCCAAT
GCCCGTGCTTCGGTCCGAACAGGACAGTAGTTGGGCCACAGCAGAGGAGA
AGTAGTCTGTCTATAGGTAGGATTTTCGATGACAAGTCCGCCTCTCTCGG
ATCCAGATACTCCGAACTGACACTATTTTGTTGCAGGAGAAAATTCAAGT
GTGGTACGTGCCATAGGCGACACAAGATACCACACCCCCTGGACATATTT
TTTAGAAGCTGGATTGCTCCCCAGCAAAAGAAGAGTGTCAGTGCCGAAAG
GGGGTGGGCGGCGTTGGAAAGATCTGGTCGAGGGCTGCCCGAAAATGTGT
CGTTTGGTGCTGGCATCACCCTCTTCGTTACGGAGTAGTAGAGCTCTAAA
AATCGGTCCGGGGTGTGTGGTGTCTTGTGTCACCTACGGTACGTGTGGAA
TGAGTAATGTGTTTGTTGGGATCTATCTGCAAAATGTAGTCGGAGGGCAA
ACGAAATAATAATAATAGTAATAAAAACCTACCTAAACAACATATATTAT
TGAATTATCGGAGGGCAAACGAAATAATAGTAAGATAATCTGTTGTACTA
CAACCTATTGGTTGGGTGAGAAACCACGGGATATAACTTCCTCGGTATCG
ACTTGGATGTGGGAATGGGAAGAGGTCGTTTGCTTGGTAACGGTATGGGT
GGGTACGTGAACCGCGATTCATCACGGGAACGATCCCATTCCCGTGAAAA
TACCGCGAGAAAATTACCGCGGGAAAATTACCGCGGGAACGATCCCATTC
CCGTGAAAATACCGCGAGAATTTTCCCGCGGGAAAATTACCGTGGGAAAA
TTACCGCGGGAATATTCCCGAGATGGGCCTTGTATAAATAGTTATTTAGT
AGGTGAATACGCTTTGTTTTCTGCCTCATGCTCAGCGTCGTGTTTCCCTC
CAATAAATAATAATGATATAATGCCATCGCCGCCGGCAGCCGCGAAGAAC
GACGGGAAGAGAGCAAACAAGACACGGCTGACGGAGTCCACGGGGAAGCT
GATCGAAGAGGGGAGAGGCAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16917:313..1534+

>mRNA_L-elsbetiae_contig16917.4637.1 ID=mRNA_L-elsbetiae_contig16917.4637.1|Name=mRNA_L-elsbetiae_contig16917.4637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig16917:313..1534+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTGGTTTCATGCAGCAGCAGCAGCCGCAGCAGCTGTTTTTTTTTTT
TTTTATCGGGGGCACCGCCTGCTGTGGGCTTTGTATCAGCAGCCCTCCGT
TTTTGCCCCAGTGGCGAGTCCCCTCCTGCACCTCCGCTCTGCTGGAGGAT
GGCAGCGGTAGTTCGCGCTTTTACTCCATGCCCGCAGATGGTTGGTTTCA
TGCAGCAGCAGCAGCCGCAGCAGCTGTTTTTTTTTTTTTTTATCGGGGGC
ACCGCCTGCTGTGGGCTTTGTATCAGCAGCCCTCCGTTTTTGCCCCAGTG
GCGAGTCCCCTCCTGCACCTCCGCTCTGCTGGAGGATGGCAGCGGTAGTT
CGCGCTTTTACTCCATGCCCGCAGCCGCGAAGAACGACGGGAAGAGAGCA
AACAAGACACGGCTGACGGAGTCCACGGGGAAGCTGATCGAAGAGGGGAG
AGGCAAACCGCGAAGAACGACGGGAAGAGAGCAAACAAGACACGGCTGAC
GGAGTCCACGGGGAAGCTGATCGAAGAGGGGAGAGGCAAA
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