mRNA_L-elsbetiae_contig16855.4604.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16855.4604.1
Unique NamemRNA_L-elsbetiae_contig16855.4604.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16855.4604.1 vs. uniprot
Match: A0A6H5JY41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY41_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.490e-7
Identity = 103/244 (42.21%), Postives = 129/244 (52.87%), Query Frame = 3 
Query:   12 GDSPLILASKGGHLSTVQVLLEAGADASIVGEDA------SALGMAAQFGHTDVMEAIIGAEADVDAAFGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP-NAKYSLGDTVLHLICTSPKGGFEAVVEELLRRGADNTILDWDGCTPAGNLDVAREFF-GLHAEEEYARPEEIQRVRMMLQKRAPGGKK-RKK*GLAVIRRRAAGPWSSSCSS 716
            G SPL+LAS+ GH STV+VLL AGAD +    D+      +AL +AA  GH  V++AI+G   D  A    G                   XXXXXXXXXXXXXXXXXXXXXXXXXXX              N   S G +VLH  C  P+ G +  V  LLR  A    LD  G TP+ +L++A   F G  A    +  EEIQR  ++L  RAP  +  R++  LA++R RA G    +CSS
Sbjct:  206 GFSPLMLASRNGHRSTVEVLLRAGADTTRRATDSGDFSHMAALDVAAAQGHVRVVKAILGNGGDASAVDDHGCTALHYAALHKHGGEVVDVXXXXXXXXXXXXXXXXXXXXXXXXXXXDEAMVTLVKRGGNVNENTSNGVSVLHWACAIPRPGVDRAVGLLLRWEAFAAALDSRGETPSNHLELAAALFAGTSAAPRNSVREEIQRALVLLA-RAPADRTWRRRCWLAMLRARA-GREREACSS 447
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16855.4604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JY41_9PHAE4.490e-742.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16855contigL-elsbetiae_contig16855:138..2147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue1e-08
Seed eggNOG ortholog2880.D8LQM9
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size2010
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16855.4604.1prot_L-elsbetiae_contig16855.4604.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16855 263..796 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.4365854-UTR-L-elsbetiae_contig16855:137..2621622815700.4365854-UTR-L-elsbetiae_contig16855:137..262Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16855 138..262 +
1691683046.379344-UTR-L-elsbetiae_contig16855:137..2621691683046.379344-UTR-L-elsbetiae_contig16855:137..262Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16855 138..262 +
1622815700.4635074-UTR-L-elsbetiae_contig16855:796..21471622815700.4635074-UTR-L-elsbetiae_contig16855:796..2147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16855 797..2147 +
1691683046.408764-UTR-L-elsbetiae_contig16855:796..21471691683046.408764-UTR-L-elsbetiae_contig16855:796..2147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16855 797..2147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.4482899-CDS-L-elsbetiae_contig16855:262..7961622815700.4482899-CDS-L-elsbetiae_contig16855:262..796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16855 263..796 +
1691683046.397718-CDS-L-elsbetiae_contig16855:262..7961691683046.397718-CDS-L-elsbetiae_contig16855:262..796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16855 263..796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16855.4604.1

>prot_L-elsbetiae_contig16855.4604.1 ID=prot_L-elsbetiae_contig16855.4604.1|Name=mRNA_L-elsbetiae_contig16855.4604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
MAAQFGHTDVMEAIIGAEADVDAAFGDGSTALHFAASNGEVGAVDALIKA
GANTEMKNDANHTPLLAAAGQEAFETMCALLRHGADPNAKYSLGDTVLHL
ICTSPKGGFEAVVEELLRRGADNTILDWDGCTPAGNLDVAREFFGLHAEE
EYARPEEIQRVRMMLQKRAPGGKKRKK*
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mRNA from alignment at L-elsbetiae_contig16855:138..2147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16855.4604.1 ID=mRNA_L-elsbetiae_contig16855.4604.1|Name=mRNA_L-elsbetiae_contig16855.4604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2010bp|location=Sequence derived from alignment at L-elsbetiae_contig16855:138..2147+ (Laminarionema elsbetiae ELsaHSoW15)
CCACCGACAAGGGTGACTCGCCGTTGATTCTGGCATCCAAAGGAGGGCAC
CTCTCTACCGTGCAGGTCCTGCTGGAAGCCGGTGCTGATGCCAGCATTGT
CGGCGAGGACGCCTCAGCCCTCGGCATGGCCGCCCAATTTGGGCACACTG
ATGTTATGGAGGCCATCATCGGCGCGGAGGCAGACGTCGACGCTGCATTT
GGCGATGGCTCTACCGCACTGCACTTCGCTGCTTCGAACGGCGAGGTGGG
TGCCGTGGATGCACTGATCAAGGCAGGGGCCAACACAGAGATGAAGAATG
ACGCGAACCATACCCCTCTCTTAGCGGCCGCGGGTCAAGAGGCGTTTGAG
ACAATGTGCGCCCTCCTGCGGCACGGGGCGGATCCAAACGCGAAGTACTC
CCTTGGAGACACGGTGTTGCATTTGATTTGCACTTCCCCGAAAGGTGGCT
TTGAGGCGGTCGTGGAGGAGCTGCTGCGGCGGGGAGCAGACAATACTATC
CTGGACTGGGATGGATGTACCCCAGCGGGCAACCTCGATGTCGCGAGAGA
ATTTTTTGGGTTGCACGCGGAAGAAGAATACGCGCGCCCAGAAGAGATTC
AGCGAGTACGGATGATGCTACAGAAGAGGGCGCCTGGTGGAAAGAAACGT
AAAAAATAAGGATTGGCAGTCATCCGACGGCGAGCTGCAGGGCCATGGTC
GAGTTCATGTAGTTCAACGGTTTTTCGTCGGTCGTAGAAACCAAATATAA
AGCTAAGTGCGTTGTGTGAGTCATCGGTAATAACGGAGCTTTGCTTTTTC
CGAGCTTCTGTTTTGTGCACAGAAGCTGCTTTGCTGATAGACAGCGTTGT
TCTGTCTTCCCCGCGTTTGTTTTGCGTTTAGTCGAGGACCAACACAAAAA
TAGCGTCCTTGGCGTGTGGGTATATCAGGCTGCCTCCCTTGTTGTTTTTA
GTTGAACAGGCTCTCTCGTTGAGAGTATGCCCTATAAAGTAGGGTGCGTG
GTCATGATGAGCGGGGATATTATCGATTTTCGCGCATTTGGTTGAGGACC
AATACAAAAAAGCAGTGGGTCCTGGAAGACGTTTGTCACACCCGGGGTAG
TACGGGCATCACGCACCATTGGTATGAGTCCACGACTTTTATTGTATCCG
TAGTATTCCTGGACAAATTGACCCGTATGTTTTTTCATATGACCGCTGAC
GTGTAAAGAAACAGCTGCCTTCTCCCCTTATTTGTCCGGTTTGCAGCCTC
CTGGCCGCATCCAAGGTGTTGCCGAATATGTGGTTTTGCTTTATGTGTCT
GGACCAGAGTAGCTGCGGCGGTGTAGATTGGATCAGTAGAGGGATGTCGT
ATGTACGGTGCCGCGGAGTCAGCAGATGCCGAATATATATGTGGTTTTGC
TTTATGTGTCTGGACCAGAGTAGCTGCGGCGTTCAGTTTGAGCCCCATTT
TGTGTCCACCATATATCATGTGTACACAAACTTCGATCTCACCGTCGATG
AGGGAAAGGGACGGCTGAACTCTTCTCGTGACAAAACTCTTAGGCAGTGG
TGTGTGGAATCGTTTTCAACGGGGCGGAGGAGGATGCTAGCCGGCAACGG
GCGATGAAACGAGAAAAAAAGAGCCCGGCAATAAAACAGACGCGGCAACG
ACCGAGGGGGGAAGGGACCGGAGGCGATGGAAACTGCGCACGACGTATAC
AAGAGAGCGGAGGCGGACGCAGTAGCGCGGCATGTTGCGGATTGAATTCT
TGACTAATCTCCCTCCACTGCTGTACCATCTTGCAACACCGCCGGGGGAG
CGATGACGTGTTTGGTGTTTTTATGTGTGTCTGTCTGTTTTGTTTGGACT
TTCGGCTTGTTTATTGTCCGATGCCCTTTTCCTCTTGCTGCATCATGTGT
GCAGTACAACGGATTGGGAGGACTAGATCGGTGGGCCTGTCCGGCGAGAA
TCCGGAGCGGAACACCCCGGCATTGTTGGGGTACCAAGATAGAACCAGGG
GGCGTACCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16855:138..2147+

>mRNA_L-elsbetiae_contig16855.4604.1 ID=mRNA_L-elsbetiae_contig16855.4604.1|Name=mRNA_L-elsbetiae_contig16855.4604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig16855:138..2147+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGCCCAATTTGGGCACACTGATGTTATGGAGGCCATCATCGGCGC
GGAGGCAGACGTCGACGCTGCATTTGGCGATGGCTCTACCGCACTGCACT
TCGCTGCTTCGAACGGCGAGGTGGGTGCCGTGGATGCACTGATCAAGGCA
GGGGCCAACACAGAGATGAAGAATGACGCGAACCATACCCCTCTCTTAGC
GGCCGCGGGTCAAGAGGCGTTTGAGACAATGTGCGCCCTCCTGCGGCACG
GGGCGGATCCAAACGCGAAGTACTCCCTTGGAGACACGGTGTTGCATTTG
ATTTGCACTTCCCCGAAAGGTGGCTTTGAGGCGGTCGTGGAGGAGCTGCT
GCGGCGGGGAGCAGACAATACTATCCTGGACTGGGATGGATGTACCCCAG
CGGGCAACCTCGATGTCGCGAGAGAATTTTTTGGGTTGCACGCGGAAGAA
GAATACGCGCGCCCAGAAGAGATTCAGCGAGTACGGATGATGCTACAGAA
GAGGGCGCCTGGTGGAAAGAAACGTAAAAAATAAATGGCCGCCCAATTTG
GGCACACTGATGTTATGGAGGCCATCATCGGCGCGGAGGCAGACGTCGAC
GCTGCATTTGGCGATGGCTCTACCGCACTGCACTTCGCTGCTTCGAACGG
CGAGGTGGGTGCCGTGGATGCACTGATCAAGGCAGGGGCCAACACAGAGA
TGAAGAATGACGCGAACCATACCCCTCTCTTAGCGGCCGCGGGTCAAGAG
GCGTTTGAGACAATGTGCGCCCTCCTGCGGCACGGGGCGGATCCAAACGC
GAAGTACTCCCTTGGAGACACGGTGTTGCATTTGATTTGCACTTCCCCGA
AAGGTGGCTTTGAGGCGGTCGTGGAGGAGCTGCTGCGGCGGGGAGCAGAC
AATACTATCCTGGACTGGGATGGATGTACCCCAGCGGGCAACCTCGATGT
CGCGAGAGAATTTTTTGGGTTGCACGCGGAAGAAGAATACGCGCGCCCAG
AAGAGATTCAGCGAGTACGGATGATGCTACAGAAGAGGGCGCCTGGTGGA
AAGAAACGTAAAAAATAA
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