mRNA_L-elsbetiae_contig16701.4532.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16701.4532.1
Unique NamemRNA_L-elsbetiae_contig16701.4532.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16701.4532.1 vs. uniprot
Match: A0A6H5JXM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM3_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.340e-15
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 2 
Query:    5 VKEHGQMSKTERERASSKCMQELAIPGFIKLVEAYEAQKERTLPMPHKWKDMVYHTTLGTGTAR 196
            VKE  +MS  +R  A+SKCMQE+A+PGFIKL+E   +  E    MPHKWK MVY+TTLG+GT++
Sbjct:  162 VKEADKMSAAQRNLAASKCMQEIAVPGFIKLIEHALSTMEGPPQMPHKWKVMVYYTTLGSGTSK 225
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BLAST of mRNA_L-elsbetiae_contig16701.4532.1 vs. uniprot
Match: A0A6H5KFH5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFH5_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.650e-14
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:    5 VKEHGQMSKTERERASSKCMQELAIPGFIKLVEAYEAQKERTLPMPHKWKDMVYHTTLGTG 187
            VKE  +MS  +R  A+SKCMQE+A+PGFIKL+E   +     L MPHKWK MVY+T+LG+G
Sbjct:   58 VKEADKMSAAQRNLAASKCMQEIAVPGFIKLIEHALSIMGGPLQMPHKWKVMVYYTSLGSG 118
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BLAST of mRNA_L-elsbetiae_contig16701.4532.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 9.040e-9
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 2 
Query:    5 VKEHGQMSKTERERASSKCMQELAIPGFIKLVEAYEAQKERTLPMPHKWKDMVYHTTLGTG 187
            VK+   M    R  A SK MQE+A+PG+IK+ EA     +  L  PH WKD +Y+TTLGTG
Sbjct:   58 VKQGEDMKSDVRNAAMSKRMQEIAVPGWIKVCEAAIKDSQGELVFPHGWKDALYYTTLGTG 118
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BLAST of mRNA_L-elsbetiae_contig16701.4532.1 vs. uniprot
Match: A0A6H5KGQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGQ6_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-8
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 2 
Query:   62 MQELAIPGFIKLVEAYEAQKERTLPMPHKWKDMVYHTTLGT 184
            MQE+A+ GFIKL+E   +  +  L MPHKWKDMVY+TTLG+
Sbjct:    1 MQEIAVSGFIKLIEHAMSTMDGPLQMPHKWKDMVYYTTLGS 41
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16701.4532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JXM3_9PHAE7.340e-1557.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFH5_9PHAE2.650e-1457.38Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
D7FV02_ECTSI9.040e-949.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGQ6_9PHAE1.190e-860.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16701contigL-elsbetiae_contig16701:2204..3027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_003920.1
Exons2
Model size256
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16701.4532.1prot_L-elsbetiae_contig16701.4532.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16701 2243..3005 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.7602825-UTR-L-elsbetiae_contig16701:2203..22421622815694.7602825-UTR-L-elsbetiae_contig16701:2203..2242Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16701 2204..2242 -
1691683042.9341803-UTR-L-elsbetiae_contig16701:2203..22421691683042.9341803-UTR-L-elsbetiae_contig16701:2203..2242Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16701 2204..2242 -
1622815694.7989893-UTR-L-elsbetiae_contig16701:3005..30271622815694.7989893-UTR-L-elsbetiae_contig16701:3005..3027Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16701 3006..3027 -
1691683042.9595723-UTR-L-elsbetiae_contig16701:3005..30271691683042.9595723-UTR-L-elsbetiae_contig16701:3005..3027Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16701 3006..3027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.7717717-CDS-L-elsbetiae_contig16701:2242..22741622815694.7717717-CDS-L-elsbetiae_contig16701:2242..2274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16701 2243..2274 -
1691683042.9427702-CDS-L-elsbetiae_contig16701:2242..22741691683042.9427702-CDS-L-elsbetiae_contig16701:2242..2274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16701 2243..2274 -
1622815694.7824988-CDS-L-elsbetiae_contig16701:2842..30051622815694.7824988-CDS-L-elsbetiae_contig16701:2842..3005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16701 2843..3005 -
1691683042.9510088-CDS-L-elsbetiae_contig16701:2842..30051691683042.9510088-CDS-L-elsbetiae_contig16701:2842..3005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16701 2843..3005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16701.4532.1

>prot_L-elsbetiae_contig16701.4532.1 ID=prot_L-elsbetiae_contig16701.4532.1|Name=mRNA_L-elsbetiae_contig16701.4532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
MSKTERERASSKCMQELAIPGFIKLVEAYEAQKERTLPMPHKWKDMVYHT
TLGTGTARPRFRRI*
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mRNA from alignment at L-elsbetiae_contig16701:2204..3027-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16701.4532.1 ID=mRNA_L-elsbetiae_contig16701.4532.1|Name=mRNA_L-elsbetiae_contig16701.4532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=824bp|location=Sequence derived from alignment at L-elsbetiae_contig16701:2204..3027- (Laminarionema elsbetiae ELsaHSoW15)
GTCCGTCAAGGAGCACGGGCAGATGTCCAAAACCGAGCGGGAGCGTGCGT
CTTCGAAGTGCATGCAGGAGCTCGCCATCCCTGGCTTCATCAAGCTCGTC
GAGGCTTATGAGGCGCAAAAGGAACGTACTCTGCCCATGCCCCACAAGTG
GAAAGACATGGTCTACCACACGACGCTCGGCACAGGTGTGTGACGTATGT
CTAGGTGTTTCATGAGGTGGTACGCAGCAGGTTATTGGTTGGGTTGTCGC
GTGCCTTGGCGGCAAATATATGAGTTCTGTGTGTTTTTTGTATCGAGTAT
GCACTGCATGCTCATCCTCTCATGCCACCTTCGTTGCAAGCGCACCCTGC
AGCAAAGTTCATGCGGGTAGGGGGGGGGGCATTCCTGACTTCCTCATTGG
GTGGGGTTCGCATACACAGCAGTTGTTCTTGCTTTTGGACAGGGGTGCTG
AACGCGAGAGCGTGTGTGGGTGCGAAAAAAAAAAGGCGAGAACGAGGGAG
AGACAGAAAAGCAAAAATGGGCTACTCGATGGTATCATGACAGTCCCACC
TGTGACCCACATTCTGTGAAACACTTTGTACACCCCCACTCGCGCCCGTC
TGCCGCTCTGTTTAACTCAATACACGTTGGAAAAACGTGTCCTAGCTTTT
CTCGTGGCTACCTGGCATGGTGCACATGTATGTTCTAACCATGCGACGCA
CCCGCAACTGTTCTCTATTTTTTGTGCCCCTGGTTGTTTCTTCTGTTGTG
CAGGAACGGCAAGACCGAGATTCCGGCGGATCTGAAGTCTGGCACCACCA
CCAAAGACTCGCTTGAAGAGCTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16701:2204..3027-

>mRNA_L-elsbetiae_contig16701.4532.1 ID=mRNA_L-elsbetiae_contig16701.4532.1|Name=mRNA_L-elsbetiae_contig16701.4532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig16701:2204..3027- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCAAAACCGAGCGGGAGCGTGCGTCTTCGAAGTGCATGCAGGAGCT
CGCCATCCCTGGCTTCATCAAGCTCGTCGAGGCTTATGAGGCGCAAAAGG
AACGTACTCTGCCCATGCCCCACAAGTGGAAAGACATGGTCTACCACACG
ACGCTCGGCACAGATGTCCAAAACCGAGCGGGAGCGTGCGTCTTCGAAGT
GCATGCAGGAGCTCGCCATCCCTGGCTTCATCAAGCTCGTCGAGGCTTAT
GAGGCGCAAAAGGAACGTACTCTGCCCATGCCCCACAAGTGGAAAGACAT
GGTCTACCACACGACGCTCGGCACAGGAACGGCAAGACCGAGATTCCGGC
GGATCTGAGAACGGCAAGACCGAGATTCCGGCGGATCTGA
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