mRNA_L-elsbetiae_contig16701.4531.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16701.4531.1
Unique NamemRNA_L-elsbetiae_contig16701.4531.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16701.4531.1 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.280e-34
Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = -2
Query:    4 EVPDSWFCPYLILAAAYSPWGGNTPSEWKHLESSSGPKKRKSTAPPEITLDKSNPVCNPAAMVRINPNGDAFSRRQHAAAIKKEKELEKKATKDKENEEARKEALSAMK 330
            EVP+ W  P+L+L AAYSPW G  PSEWKHL+SS GP K++     ++ +D  NPVC+PA M R++PNGDA SRRQH AAIK+EKE E+KAT DKE +E+RKE L   K
Sbjct:  117 EVPEWWIFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGG--DVNVDSENPVCSPAVMSRLDPNGDALSRRQHFAAIKREKEQERKATADKELQESRKETLETKK 223          
BLAST of mRNA_L-elsbetiae_contig16701.4531.1 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.120e-34
Identity = 67/109 (61.47%), Postives = 81/109 (74.31%), Query Frame = -2
Query:    1 VPDSWFCPYLILAAAYSPWGGNTPSEWKHLESSSGPKKRKSTAPPEITLDKSNPVCNPAAMVRINPNGDAFSRRQHAAAIKKEKELEKKATKDKENEEARKEALSAMKG 327
            VP+ W  P+L+L AAYSPW G  PSEWKHL+SS GP K++  A  ++T+D  NPVC+PA M R+NPNGDA SRRQH AAIK+EKE E KA  +KE +EARKE L   KG
Sbjct:  137 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGA--DVTVDSENPVCSPAVMSRLNPNGDALSRRQHFAAIKREKEQEMKAAAEKELQEARKEPLETKKG 243          
BLAST of mRNA_L-elsbetiae_contig16701.4531.1 vs. uniprot
Match: A0A6H5K6E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E0_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 5.580e-33
Identity = 67/110 (60.91%), Postives = 79/110 (71.82%), Query Frame = -2
Query:    4 EVPDSWFCPYLILAAAYSPWGGNTPSEWKHLESSSGPK-KRKSTAPPEITLDKSNPVCNPAAMVRINPNGDAFSRRQHAAAIKKEKELEKKATKDKENEEARKEALSAMK 330
            EVP+ W  P+L+L AAYSPW G  PSEWKHL+SS GP  KRK     ++T+D  NPVC+PA M R+NPNGDA SRRQH AAIK+EKE E+K   DK  +EA KEAL   K
Sbjct:   30 EVPEWWVFPFLLLTAAYSPWSGRAPSEWKHLDSSDGPSIKRKGG---DVTVDSENPVCSPAVMSRLNPNGDALSRRQHFAAIKREKEQERKKAADKRLQEAWKEALETKK 136          
BLAST of mRNA_L-elsbetiae_contig16701.4531.1 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.310e-29
Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = -2
Query:    1 EVPDSWFCPYLILAAAYSPWGGNTPSEWKHLESSSGPKKRKSTAPPEITLDKSNPVCNPAAMVRINPNGDAFSRRQHAAAIKKEKELEKKATKDKENEEARKEALSAMKG 330
            EVP+ W  P+L+L AAYSPW G  PSEWKHL+SS G  K+++    ++T+D  NPV +PA M R+NPNGDA SRRQH AAIK+EKE E+KA  DKE +     AL   KG
Sbjct:  120 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGLSKKRTGG--DVTVDSENPVYSPAVMSRLNPNGDALSRRQHFAAIKREKEEERKAAADKELQXXXXXALETKKG 227          
BLAST of mRNA_L-elsbetiae_contig16701.4531.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.010e-22
Identity = 67/153 (43.79%), Postives = 87/153 (56.86%), Query Frame = -2
Query:    4 LAAQAAARLRQEKQATGAS---------KDPKEDEVPDSWFCPYLILAAAYSPWGGNTPSEWKHLESSSGPKKRKSTAPP----------EITLDKSNPVCNPAAMVRINPNGDAFSRRQHAAAIKKEKELEKKATKDKENEEARKEALSAMK 405
            LA +AA  LR+E  +  AS         +    +++PD ++ PYL+LA  +S W GNTPSEWKHL +SSGP+ R S              E+ +   NP+ +P AM  +N NGDA SRRQ+ A IKKEKE  KK  K+KEN   R EAL   K
Sbjct:  251 LARRAAEALRREMASPTASGSGSGANLGRPEGNEDIPDDYYYPYLLLACPWSSWSGNTPSEWKHLAASSGPRNRASKGDKGNSNGNDNSNEVVITDDNPIGSPRAMGLMNANGDAVSRRQYFANIKKEKEQVKKDAKEKENVALRNEALDTRK 403          
BLAST of mRNA_L-elsbetiae_contig16701.4531.1 vs. uniprot
Match: A0A6H5KVE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE3_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 7.000e-21
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = -2
Query:  109 DEVPDSWFCPYLILAAAYSPWGGNTPSEWKHLESSSGPK-KRKSTAPPEITLDKSNPVCNPAAMVRINPNGDAFSR 333
            +EV + W  P+L+  AAYSPW G  PSEWKHL+SS GP  KRK     ++T+D  NPVC+PA M R+NPNGDA SR
Sbjct:   30 EEVSEWWVFPFLLHTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGG---DVTVDSENPVCSPAVMSRLNPNGDALSR 102          
BLAST of mRNA_L-elsbetiae_contig16701.4531.1 vs. uniprot
Match: A0A6H5JXM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.180e-20
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = -2
Query:  109 DEVPDSWFCPYLILAAAYSPWGGNTPSEWKHLESSSGPK-KRKSTAPPEITLDKSNPVCNPAAMVRINPNGDAFSR 333
            +EVP+ W  P+L+L AAYSPW G  PSEWKHL+SS GP  KRK     ++T+D  NPVC+PA M R+NPNGDA SR
Sbjct:  398 EEVPEWWVFPFLLLTAAYSPWSGRAPSEWKHLDSSDGPSIKRKGG---DVTVDSENPVCSPAVMSRLNPNGDALSR 470          
BLAST of mRNA_L-elsbetiae_contig16701.4531.1 vs. uniprot
Match: A0A6H5K7S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.520e-16
Identity = 48/109 (44.04%), Postives = 60/109 (55.05%), Query Frame = -2
Query:    4 EVPDSWFCPYLILAAAYSPWGGNTPSEWKHLESSSGPKKRKSTAPPEITLDKSNPVCNPAAMVRINPNGDAFSRRQHAAAIKKEKELEKKATKDKENEEARKEALSAMK 330
            EVP+ W  P+L+L AAYSPW G  PSEWKHL+SS GP K++     ++T+D  NPVC+PA                           E+KA  DKE +EARKEAL   K
Sbjct:  105 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGG--DVTVDSENPVCSPA---------------------------ERKAATDKELQEARKEALETKK 184          
BLAST of mRNA_L-elsbetiae_contig16701.4531.1 vs. uniprot
Match: A0A6H5KDD8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.990e-14
Identity = 51/126 (40.48%), Postives = 68/126 (53.97%), Query Frame = -2
Query:  154 PAGAGPAVMSALNATDMQPAGAGEAAGEGSHNRATSNLAAQAAARLRQEKQATGASKDPKED----EVPDSWFCPYLILAAAYSPWGGNTPSEWKHLESSSGPK-KRKSTAPPEITLDKSNPVCNP 516
            PAG GPA  +AL  T+++                  +LAA AAA +R+E++               EVP+ W  P+L+L AAYSPW G  PSEWKHL+SS GP  KRK     ++T+D  NPV +P
Sbjct:   61 PAGQGPAAQAALAETEVRQ----------EPGSTPISLAAAAAANIRREQEXXXXXXXXXXXXXXXEVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGG---DVTVDSDNPVSSP 173          
BLAST of mRNA_L-elsbetiae_contig16701.4531.1 vs. uniprot
Match: A0A6H5KAW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.090e-12
Identity = 50/124 (40.32%), Postives = 71/124 (57.26%), Query Frame = -2
Query:    7 VPDSWFCPYLILAAAYSPWGGNTPSEWKHLESSSGPKKRKSTAPPEITLDK--SNPVCNPAAMVRI--------NPNGDAFSRRQHAAAIKKEKELEKKATKDKEN----EEA---RKEALSAM 327
            VPD WF PY+I+AAA+SPWGGN P++W++L +S G       AP     D+  S P+ +P A+           N NG++ SRR H AA+  E +  ++  +D EN    E+A   +KEAL AM
Sbjct:  401 VPDGWFHPYIIIAAAWSPWGGNCPTQWQNLSASDG------KAPTNKKGDQIASGPLSSPGALAESTASARKMENNNGNSVSRRAHQAALNAETDRVRRDKRDNENMAQQEKATALKKEALQAM 518          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16701.4531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KGF1_9PHAE1.280e-3459.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTM3_9PHAE2.120e-3461.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6E0_9PHAE5.580e-3360.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJW8_9PHAE2.310e-2956.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV02_ECTSI1.010e-2243.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVE3_9PHAE7.000e-2157.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXM3_9PHAE1.180e-2060.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7S4_9PHAE8.520e-1644.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDD8_9PHAE8.990e-1440.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KAW6_9PHAE4.090e-1240.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16701contigL-elsbetiae_contig16701:1524..2175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size652
Cds size357
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.7187464-UTR-L-elsbetiae_contig16701:1523..18181622815694.7187464-UTR-L-elsbetiae_contig16701:1523..1818Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16701 1524..1818 +
1691683042.9133542-UTR-L-elsbetiae_contig16701:1523..18181691683042.9133542-UTR-L-elsbetiae_contig16701:1523..1818Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16701 1524..1818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.7284846-CDS-L-elsbetiae_contig16701:1818..21751622815694.7284846-CDS-L-elsbetiae_contig16701:1818..2175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16701 1819..2175 +
1691683042.9257362-CDS-L-elsbetiae_contig16701:1818..21751691683042.9257362-CDS-L-elsbetiae_contig16701:1818..2175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16701 1819..2175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16701.4531.1prot_L-elsbetiae_contig16701.4531.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16701 1819..2175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16701.4531.1

>prot_L-elsbetiae_contig16701.4531.1 ID=prot_L-elsbetiae_contig16701.4531.1|Name=mRNA_L-elsbetiae_contig16701.4531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MRYGQNQESGTSSSLGSLLAPVACFSWRNLAAACAARFDVALLWEPSPAA
SPAPAGCISVAFRADMTAGPAPAGVTTSARVPAAAPAAGEVAPTGLVLPA
PAAALLAASSSTFLICRR*
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mRNA from alignment at L-elsbetiae_contig16701:1524..2175+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16701.4531.1 ID=mRNA_L-elsbetiae_contig16701.4531.1|Name=mRNA_L-elsbetiae_contig16701.4531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=652bp|location=Sequence derived from alignment at L-elsbetiae_contig16701:1524..2175+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCTTCATCGCGGACAGAGCCTCCTTCCTCGCCTCCTCGTTCTCCTTGT CCTTTGTTGCCTTCTTCTCCAGCTCCTTCTCCTTCTTGATGGCGGCGGCA TGCTGCCGGCGGCTGAACGCGTCCCCGTTCGGGTTGATGCGCACCATTGC CGCAGGGTTACAAACGGGGTTGCTCTTGTCGAGGGTGATCTCCGGGGGCG CAGTACTCTTGCGCTTCTTCGGCCCGCTTGAAGACTCGAGGTGTTTCCAC TCCGAAGGGGTGTTGCCCCCCCACGGGCTGTAGGCGGCTGCGAGGATGAG GTACGGGCAGAACCAAGAGTCGGGCACCTCGTCCTCCTTGGGATCCTTGC TCGCACCCGTTGCCTGCTTCTCCTGGCGCAACCTGGCGGCAGCTTGCGCC GCCAGGTTTGACGTCGCTCTGTTGTGGGAGCCTTCGCCGGCGGCCTCGCC CGCACCCGCGGGCTGCATATCAGTGGCATTCAGAGCAGACATGACCGCCG GCCCCGCACCAGCCGGGGTTACCACCTCTGCGAGGGTCCCGGCGGCAGCG CCAGCTGCAGGCGAGGTGGCGCCGACCGGGTTGGTGCTGCCGGCACCAGC CGCGGCGCTCTTGGCGGCCTCCTCTTCGACCTTCTTGATCTGCCGCAGGT AG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16701:1524..2175+

>mRNA_L-elsbetiae_contig16701.4531.1 ID=mRNA_L-elsbetiae_contig16701.4531.1|Name=mRNA_L-elsbetiae_contig16701.4531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig16701:1524..2175+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGTACGGGCAGAACCAAGAGTCGGGCACCTCGTCCTCCTTGGGATC
CTTGCTCGCACCCGTTGCCTGCTTCTCCTGGCGCAACCTGGCGGCAGCTT
GCGCCGCCAGGTTTGACGTCGCTCTGTTGTGGGAGCCTTCGCCGGCGGCC
TCGCCCGCACCCGCGGGCTGCATATCAGTGGCATTCAGAGCAGACATGAC
CGCCGGCCCCGCACCAGCCGGGGTTACCACCTCTGCGAGGGTCCCGGCGG
CAGCGCCAGCTGCAGGCGAGGTGGCGCCGACCGGGTTGGTGCTGCCGGCA
CCAGCCGCGGCGCTCTTGGCGGCCTCCTCTTCGACCTTCTTGATCTGCCG
CAGGTAGATGAGGTACGGGCAGAACCAAGAGTCGGGCACCTCGTCCTCCT
TGGGATCCTTGCTCGCACCCGTTGCCTGCTTCTCCTGGCGCAACCTGGCG
GCAGCTTGCGCCGCCAGGTTTGACGTCGCTCTGTTGTGGGAGCCTTCGCC
GGCGGCCTCGCCCGCACCCGCGGGCTGCATATCAGTGGCATTCAGAGCAG
ACATGACCGCCGGCCCCGCACCAGCCGGGGTTACCACCTCTGCGAGGGTC
CCGGCGGCAGCGCCAGCTGCAGGCGAGGTGGCGCCGACCGGGTTGGTGCT
GCCGGCACCAGCCGCGGCGCTCTTGGCGGCCTCCTCTTCGACCTTCTTGA
TCTGCCGCAGGTAG
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