mRNA_L-elsbetiae_contig1670.4530.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1670.4530.1
Unique NamemRNA_L-elsbetiae_contig1670.4530.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1670.4530.1 vs. uniprot
Match: A0A0R6M4T4_UNDPI (50S ribosomal protein L21, chloroplastic n=25 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4T4_UNDPI)

HSP 1 Score: 171 bits (432), Expect = 2.410e-53
Identity = 83/102 (81.37%), Postives = 93/102 (91.18%), Query Frame = 1
Query:    1 MEYAIIEASGKQFWVEPKKFIELNRLTIKTGSNILIRRVLFVKKNNNILIGQPFLNNVKIEGIITKHFLGPKILVFKMKPKKKYKKKFGHRQKLTRLLINKI 306
            MEYAIIEASG+QFWVEPKKFIE NRL +K GS ILIRRVLFVK+  N LIGQP+LNNV ++G+++KHFLGPKILVFKMKPKKKY+KK GHRQKLTRLLINKI
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTILIRRVLFVKQKKNTLIGQPYLNNVVVKGVVSKHFLGPKILVFKMKPKKKYRKKIGHRQKLTRLLINKI 102          
BLAST of mRNA_L-elsbetiae_contig1670.4530.1 vs. uniprot
Match: A0A8F0JZ48_9PHAE (Ribosomal protein L21 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ48_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 9.430e-51
Identity = 80/102 (78.43%), Postives = 91/102 (89.22%), Query Frame = 1
Query:    1 MEYAIIEASGKQFWVEPKKFIELNRLTIKTGSNILIRRVLFVKKNNNILIGQPFLNNVKIEGIITKHFLGPKILVFKMKPKKKYKKKFGHRQKLTRLLINKI 306
            MEYAIIEASG+QFWVEPKKFIE NRL +K GS +LIRRVLFVKK  N LIG+P+L  + ++GII+KHFLGPKI+VFKMKPKKKY+KK GHRQKLTRLLINKI
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTVLIRRVLFVKKEANTLIGRPYLEGIVLKGIISKHFLGPKIIVFKMKPKKKYRKKIGHRQKLTRLLINKI 102          
BLAST of mRNA_L-elsbetiae_contig1670.4530.1 vs. uniprot
Match: A0A8F0F7S8_9PHAE (Ribosomal protein L21 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7S8_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 5.460e-50
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 1
Query:    1 MEYAIIEASGKQFWVEPKKFIELNRLTIKTGSNILIRRVLFVKKNNNILIGQPFLNNVKIEGIITKHFLGPKILVFKMKPKKKYKKKFGHRQKLTRLLINKI 306
            MEYAIIEASG+QFWVEPKKFIE N L IK GS ILIRRVLF K   N  IGQP+LN+V ++GII+KHFLGPK+LVFKMKPKKKY+KK GHRQKLTRLLIN+I
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNXLIIKIGSTILIRRVLFFKNETNTFIGQPYLNDVVVKGIISKHFLGPKVLVFKMKPKKKYRKKIGHRQKLTRLLINQI 102          
BLAST of mRNA_L-elsbetiae_contig1670.4530.1 vs. uniprot
Match: A0A2R4QQ35_9PHAE (50S ribosomal protein L21 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ35_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.210e-49
Identity = 78/102 (76.47%), Postives = 90/102 (88.24%), Query Frame = 1
Query:    1 MEYAIIEASGKQFWVEPKKFIELNRLTIKTGSNILIRRVLFVKKNNNILIGQPFLNNVKIEGIITKHFLGPKILVFKMKPKKKYKKKFGHRQKLTRLLINKI 306
            MEYAIIEASG+QFWVEPKKFIE NRL +K GS I+I+RVLFVKK  +  IGQP+L N+ + GII+KHFLGPK+LVFKMKPKKKY+KK GHRQKLTRLLIN+I
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKKADTFIGQPYLKNILLTGIISKHFLGPKVLVFKMKPKKKYRKKIGHRQKLTRLLINQI 102          
BLAST of mRNA_L-elsbetiae_contig1670.4530.1 vs. uniprot
Match: A0A141BSP2_9PHAE (50S ribosomal protein L21, chloroplastic n=14 Tax=Sargassum TaxID=3015 RepID=A0A141BSP2_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.940e-48
Identity = 77/102 (75.49%), Postives = 89/102 (87.25%), Query Frame = 1
Query:    1 MEYAIIEASGKQFWVEPKKFIELNRLTIKTGSNILIRRVLFVKKNNNILIGQPFLNNVKIEGIITKHFLGPKILVFKMKPKKKYKKKFGHRQKLTRLLINKI 306
            MEYAIIEASG+QFWVEP KFIELNRL ++ GS ILI+R+LFVKK  N  IGQP+L N+ ++GII+KHFLG KILVFKMKPKKKY+KK GHRQKLTRLLI+ I
Sbjct:    1 MEYAIIEASGRQFWVEPNKFIELNRLPLRIGSTILIKRILFVKKKTNTFIGQPYLTNIVLKGIISKHFLGSKILVFKMKPKKKYRKKMGHRQKLTRLLISSI 102          
BLAST of mRNA_L-elsbetiae_contig1670.4530.1 vs. uniprot
Match: A0A1I9LVJ3_9PHAE (50S ribosomal protein L21, chloroplastic n=10 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVJ3_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.500e-47
Identity = 76/102 (74.51%), Postives = 87/102 (85.29%), Query Frame = 1
Query:    1 MEYAIIEASGKQFWVEPKKFIELNRLTIKTGSNILIRRVLFVKKNNNILIGQPFLNNVKIEGIITKHFLGPKILVFKMKPKKKYKKKFGHRQKLTRLLINKI 306
            MEYAIIEASG+QFWVEPKKFIE NRL +K GS ILIRR+LF K      IGQP+L N+ ++G I+KHFLGPKILVFKMKPKKKY+KK GHRQK+TRLLI+KI
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTILIRRILFAKNKTTTHIGQPYLKNILVKGKISKHFLGPKILVFKMKPKKKYRKKIGHRQKMTRLLIHKI 102          
BLAST of mRNA_L-elsbetiae_contig1670.4530.1 vs. uniprot
Match: A0A8F0JYD6_9PHAE (Ribosomal protein L21 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYD6_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.010e-45
Identity = 73/102 (71.57%), Postives = 87/102 (85.29%), Query Frame = 1
Query:    1 MEYAIIEASGKQFWVEPKKFIELNRLTIKTGSNILIRRVLFVKKNNNILIGQPFLNNVKIEGIITKHFLGPKILVFKMKPKKKYKKKFGHRQKLTRLLINKI 306
            MEYA+IEASG+QFWVEPKKFIE NRL I  GS ++++R+LF+ K   I IGQP+L N  I+GII+KHFLGPKILVFKMKPKKKY++K GHRQKLTRL IN+I
Sbjct:    1 MEYAVIEASGRQFWVEPKKFIEFNRLLINIGSTLIMQRILFMNKTGAINIGQPYLPNTLIKGIISKHFLGPKILVFKMKPKKKYRRKIGHRQKLTRLFINQI 102          
BLAST of mRNA_L-elsbetiae_contig1670.4530.1 vs. uniprot
Match: A0A8E5XRL0_9PHAE (50S ribosomal protein L21, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRL0_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.530e-45
Identity = 69/102 (67.65%), Postives = 90/102 (88.24%), Query Frame = 1
Query:    1 MEYAIIEASGKQFWVEPKKFIELNRLTIKTGSNILIRRVLFVKKNNNILIGQPFLNNVKIEGIITKHFLGPKILVFKMKPKKKYKKKFGHRQKLTRLLINKI 306
            M+YAIIEASG+QFWVEP+KF+ELNRL +  G+ ILI+RVLF K      IGQP++N+++I+G+++KHFLGPK+LVFKMKPKKKY+K+ GHRQKLTRLLI++I
Sbjct:    1 MKYAIIEASGRQFWVEPEKFVELNRLPVNIGTKILIKRVLFAKTGEKTRIGQPYINHIEIKGVVSKHFLGPKLLVFKMKPKKKYRKRIGHRQKLTRLLISQI 102          
BLAST of mRNA_L-elsbetiae_contig1670.4530.1 vs. uniprot
Match: A0A1L2F1Q6_9PHAE (Ribosomal protein L21 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1Q6_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 4.380e-45
Identity = 74/100 (74.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query:    1 MEYAIIEASGKQFWVEPKKFIELNRLTIKTGSNILIRRVLFVKKNNNILIGQPFLNNVKIEGIITKHFLGPKILVFKMKPKKKYKKKFGHRQKLTRLLIN 300
            MEYAIIEASG+QFWVEP KFIELNRL ++ GS ILI+R+LFVKK  N  IGQP+L N+ ++GII+KHFLGPKI+VFKMK KK   KK GHRQKLTRLLIN
Sbjct:    1 MEYAIIEASGRQFWVEPNKFIELNRLPLRIGSIILIKRILFVKKKTNTFIGQPYLTNIILKGIISKHFLGPKIIVFKMKTKKNTVKKIGHRQKLTRLLIN 100          
BLAST of mRNA_L-elsbetiae_contig1670.4530.1 vs. uniprot
Match: A0A7S6UA35_9STRA (50S ribosomal protein L21, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA35_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.460e-44
Identity = 69/102 (67.65%), Postives = 87/102 (85.29%), Query Frame = 1
Query:    1 MEYAIIEASGKQFWVEPKKFIELNRLTIKTGSNILIRRVLFVKKNNNILIGQPFLNNVKIEGIITKHFLGPKILVFKMKPKKKYKKKFGHRQKLTRLLINKI 306
            M+YAIIEASG+Q+W+EPK FI +NR+ IKTGS + IRR+LFVKK  +I IGQP+LN  KI+  + KHFLGPK++VFKMKPKKKYK+K GHRQ+L+RL+IN I
Sbjct:    1 MDYAIIEASGRQYWIEPKNFININRIPIKTGSTLEIRRILFVKKEESIFIGQPYLNQFKIKATVGKHFLGPKLVVFKMKPKKKYKRKSGHRQQLSRLVINTI 102          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1670.4530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0R6M4T4_UNDPI2.410e-5381.3750S ribosomal protein L21, chloroplastic n=25 Tax=... [more]
A0A8F0JZ48_9PHAE9.430e-5178.43Ribosomal protein L21 n=1 Tax=Chorda asiatica TaxI... [more]
A0A8F0F7S8_9PHAE5.460e-5078.43Ribosomal protein L21 n=2 Tax=Laminariales TaxID=2... [more]
A0A2R4QQ35_9PHAE1.210e-4976.4750S ribosomal protein L21 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSP2_9PHAE1.940e-4875.4950S ribosomal protein L21, chloroplastic n=14 Tax=... [more]
A0A1I9LVJ3_9PHAE1.500e-4774.5150S ribosomal protein L21, chloroplastic n=10 Tax=... [more]
A0A8F0JYD6_9PHAE1.010e-4571.57Ribosomal protein L21 n=1 Tax=Protohalopteris sp. ... [more]
A0A8E5XRL0_9PHAE1.530e-4567.6550S ribosomal protein L21, chloroplastic n=1 Tax=I... [more]
A0A1L2F1Q6_9PHAE4.380e-4574.00Ribosomal protein L21 n=1 Tax=Coccophora langsdorf... [more]
A0A7S6UA35_9STRA2.460e-4467.6550S ribosomal protein L21, chloroplastic n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1670contigL-elsbetiae_contig1670:23679..23990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue5.6e-36
Seed eggNOG ortholog2880.D1J6Z3
Preferred namerpl21
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.rRNA binding
EggNOG OGs2S7IP@2759,COG0261@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.6836193-CDS-L-elsbetiae_contig1670:23678..239901622815694.6836193-CDS-L-elsbetiae_contig1670:23678..23990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1670 23679..23990 -
1691683042.8994226-CDS-L-elsbetiae_contig1670:23678..239901691683042.8994226-CDS-L-elsbetiae_contig1670:23678..23990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1670 23679..23990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1670.4530.1prot_L-elsbetiae_contig1670.4530.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1670 23679..23990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1670.4530.1

>prot_L-elsbetiae_contig1670.4530.1 ID=prot_L-elsbetiae_contig1670.4530.1|Name=mRNA_L-elsbetiae_contig1670.4530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MEYAIIEASGKQFWVEPKKFIELNRLTIKTGSNILIRRVLFVKKNNNILI
GQPFLNNVKIEGIITKHFLGPKILVFKMKPKKKYKKKFGHRQKLTRLLIN
KII*
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mRNA from alignment at L-elsbetiae_contig1670:23679..23990-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1670.4530.1 ID=mRNA_L-elsbetiae_contig1670.4530.1|Name=mRNA_L-elsbetiae_contig1670.4530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:23679..23990- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAATATGCAATTATTGAAGCTAGTGGTAAACAATTTTGGGTCGAACC CAAAAAATTTATTGAATTAAATCGTTTAACAATTAAAACAGGTAGTAATA TTTTAATTCGTCGGGTATTATTTGTAAAAAAAAACAATAATATATTGATT GGTCAACCATTTTTAAATAATGTTAAAATTGAAGGAATAATCACTAAACA TTTTCTAGGTCCTAAGATCTTAGTTTTTAAAATGAAACCAAAAAAAAAAT ATAAAAAAAAATTTGGACATAGACAAAAACTAACACGTTTATTAATAAAT AAAATCATCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1670:23679..23990-

>mRNA_L-elsbetiae_contig1670.4530.1 ID=mRNA_L-elsbetiae_contig1670.4530.1|Name=mRNA_L-elsbetiae_contig1670.4530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:23679..23990- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAATATGCAATTATTGAAGCTAGTGGTAAACAATTTTGGGTCGAACC
CAAAAAATTTATTGAATTAAATCGTTTAACAATTAAAACAGGTAGTAATA
TTTTAATTCGTCGGGTATTATTTGTAAAAAAAAACAATAATATATTGATT
GGTCAACCATTTTTAAATAATGTTAAAATTGAAGGAATAATCACTAAACA
TTTTCTAGGTCCTAAGATCTTAGTTTTTAAAATGAAACCAAAAAAAAAAT
ATAAAAAAAAATTTGGACATAGACAAAAACTAACACGTTTATTAATAAAT
AAAATCATCTAAATGGAATATGCAATTATTGAAGCTAGTGGTAAACAATT
TTGGGTCGAACCCAAAAAATTTATTGAATTAAATCGTTTAACAATTAAAA
CAGGTAGTAATATTTTAATTCGTCGGGTATTATTTGTAAAAAAAAACAAT
AATATATTGATTGGTCAACCATTTTTAAATAATGTTAAAATTGAAGGAAT
AATCACTAAACATTTTCTAGGTCCTAAGATCTTAGTTTTTAAAATGAAAC
CAAAAAAAAAATATAAAAAAAAATTTGGACATAGACAAAAACTAACACGT
TTATTAATAAATAAAATCATCTAA
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