mRNA_L-elsbetiae_contig1670.4529.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1670.4529.1
Unique NamemRNA_L-elsbetiae_contig1670.4529.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1670.4529.1 vs. uniprot
Match: A0A8F0F7Y7_9PHAE (Ribosomal protein L29 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Y7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 8.510e-21
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 MGFSKIDEIKSLTDIELENEILNIKKQLFNLRLRRGTRQSFKAHQFKHARRRLRQLLMIKKD 186
            M   KIDEIK+L   +LENEILNIKK+LF LRLRRG +QSFK+HQFKH + RL QLLMIKK 
Sbjct:    1 MSLPKIDEIKNLNKDDLENEILNIKKELFKLRLRRGAKQSFKSHQFKHGKHRLAQLLMIKKS 62
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4529.1 vs. uniprot
Match: A0A5B9RGZ9_9PHAE (50S ribosomal protein L29, chloroplastic n=23 Tax=Laminariales TaxID=2886 RepID=A0A5B9RGZ9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.720e-20
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 MGFSKIDEIKSLTDIELENEILNIKKQLFNLRLRRGTRQSFKAHQFKHARRRLRQLLMIKKD 186
            M   KID+IK+L   ELENEILNIKKQLF LRLRRG +QSFK+HQFKH + RL QLLMI+K 
Sbjct:    1 MSLPKIDDIKNLDKNELENEILNIKKQLFKLRLRRGAKQSFKSHQFKHGKHRLAQLLMIQKS 62
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BLAST of mRNA_L-elsbetiae_contig1670.4529.1 vs. uniprot
Match: A0A8F0F9N7_9PHAE (Ribosomal protein L29 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9N7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 5.460e-20
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 MGFSKIDEIKSLTDIELENEILNIKKQLFNLRLRRGTRQSFKAHQFKHARRRLRQLLMIKK 183
            M   K+DEIK+L   ELENEILNIK QLF LRLRRG +QSFK+HQFKH + RL QLLMIKK
Sbjct:    1 MSLPKMDEIKTLKKDELENEILNIKTQLFKLRLRRGAKQSFKSHQFKHGKHRLAQLLMIKK 61
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4529.1 vs. uniprot
Match: A0A6B7EXG5_9PHAE (50S ribosomal protein L29 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXG5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 5.600e-20
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 MGFSKIDEIKSLTDIELENEILNIKKQLFNLRLRRGTRQSFKAHQFKHARRRLRQLLMIKKD 186
            M   KIDE+ SLT+ ELE+EILN+KK+LF LRLRRGT+QSFK+HQ KH++ RL QLLMI+K 
Sbjct:    1 MSLPKIDEVISLTNRELEDEILNVKKELFKLRLRRGTKQSFKSHQIKHSKHRLSQLLMIRKS 62
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4529.1 vs. uniprot
Match: A0A8E5XRN9_9PHAE (50S ribosomal protein L29, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRN9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.980e-19
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 MGFSKIDEIKSLTDIELENEILNIKKQLFNLRLRRGTRQSFKAHQFKHARRRLRQLLMIKKDHLEN 198
            MG  KI EIK+L   ELE+EILN KK LFNLRL R TRQ FK+H+FKH + RLRQL+MIKK  LEN
Sbjct:    1 MGLPKIKEIKTLKLSELEDEILNSKKHLFNLRLLRSTRQDFKSHRFKHIKHRLRQLMMIKKISLEN 66
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4529.1 vs. uniprot
Match: A0A7T8JK69_SCYLO (50S ribosomal protein L29, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK69_SCYLO)

HSP 1 Score: 81.6 bits (200), Expect = 4.160e-19
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 MGFSKIDEIKSLTDIELENEILNIKKQLFNLRLRRGTRQSFKAHQFKHARRRLRQLLMIK 180
            M   KIDEI  LT  ELE+EILN+KK+LF LRLRRGT+QSFK+HQ KH++ RL QLLMIK
Sbjct:    1 MSLPKIDEITMLTQGELEDEILNVKKELFRLRLRRGTKQSFKSHQIKHSKHRLAQLLMIK 60
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4529.1 vs. uniprot
Match: A0A8F0FB43_9PHAE (Ribosomal protein L29 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB43_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.650e-18
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 MGFSKIDEIKSLTDIELENEILNIKKQLFNLRLRRGTRQSFKAHQFKHARRRLRQLLMIKKD 186
            M   KI EI++LT+ +LENEIL+IKKQLF LRL R T+QSFK+HQFKHA+ RL QLLMI+K 
Sbjct:    1 MSLPKIAEIQTLTNTDLENEILSIKKQLFKLRLCRATKQSFKSHQFKHAKHRLGQLLMIQKS 62
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4529.1 vs. uniprot
Match: D1J744_ECTSI (50S ribosomal protein L29, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J744_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 4.850e-18
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 MGFSKIDEIKSLTDIELENEILNIKKQLFNLRLRRGTRQSFKAHQFKHARRRLRQLLMIK 180
            M   KIDEI  L+  ELE+EI N+KK+LF LRLRRGT+QSFK+HQ KH++ RL QLLMIK
Sbjct:    1 MSLPKIDEITMLSKSELEDEIFNVKKELFRLRLRRGTKQSFKSHQLKHSKHRLAQLLMIK 60
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4529.1 vs. uniprot
Match: A0A1I9LVL3_9PHAE (50S ribosomal protein L29, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVL3_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.800e-16
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 MGFSKIDEIKSLTDIELENEILNIKKQLFNLRLRRGTRQS--FKAHQFKHARRRLRQLLMIKKDHLE 195
            M   KI+EI  L+  ELE+EILN+KK+LF LRLRRGT+Q   FK+HQFKH++ RL QLLMI+K  ++
Sbjct:    1 MSLPKINEIIMLSQSELEDEILNVKKELFKLRLRRGTKQKQFFKSHQFKHSKHRLAQLLMIQKSKID 67
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4529.1 vs. uniprot
Match: A0A7S6U9Y2_9STRA (50S ribosomal protein L29, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Y2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.550e-15
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 MGFSKIDEIKSLTDIELENEILNIKKQLFNLRLRRGTRQSFKAHQFKHARRRLRQLLMIKKDHL 192
            M   ++ EI  LT+ EL+ EILNIKK+LF LRL+RGT QSFK+H FKH R RL Q+LMIK+  L
Sbjct:    1 MSLPRVKEILILTNEELDKEILNIKKKLFELRLKRGTGQSFKSHLFKHNRHRLSQILMIKQRRL 64
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1670.4529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7Y7_9PHAE8.510e-2170.97Ribosomal protein L29 n=2 Tax=Laminariales TaxID=2... [more]
A0A5B9RGZ9_9PHAE1.720e-2070.9750S ribosomal protein L29, chloroplastic n=23 Tax=... [more]
A0A8F0F9N7_9PHAE5.460e-2072.13Ribosomal protein L29 n=1 Tax=Chorda asiatica TaxI... [more]
A0A6B7EXG5_9PHAE5.600e-2067.7450S ribosomal protein L29 n=1 Tax=Cladosiphon okam... [more]
A0A8E5XRN9_9PHAE1.980e-1968.1850S ribosomal protein L29, chloroplastic n=1 Tax=I... [more]
A0A7T8JK69_SCYLO4.160e-1970.0050S ribosomal protein L29, chloroplastic n=4 Tax=S... [more]
A0A8F0FB43_9PHAE1.650e-1867.74Ribosomal protein L29 n=1 Tax=Desmarestia aculeata... [more]
D1J744_ECTSI4.850e-1866.6750S ribosomal protein L29, chloroplastic n=2 Tax=E... [more]
A0A1I9LVL3_9PHAE1.800e-1659.7050S ribosomal protein L29, chloroplastic n=1 Tax=P... [more]
A0A7S6U9Y2_9STRA1.550e-1560.9450S ribosomal protein L29, chloroplastic n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1670contigL-elsbetiae_contig1670:18996..19196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.9
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog864702.OsccyDRAFT_3432
Preferred namerpmC
KEGG koko:K02904
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Belongs to the universal ribosomal protein uL29 family
EggNOG OGs1G906@1117,1HCSB@1150,COG0255@1,COG0255@2
COG Functional cat.J
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size201
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.6483643-CDS-L-elsbetiae_contig1670:18995..191961622815694.6483643-CDS-L-elsbetiae_contig1670:18995..19196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1670 18996..19196 -
1691683042.8855817-CDS-L-elsbetiae_contig1670:18995..191961691683042.8855817-CDS-L-elsbetiae_contig1670:18995..19196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1670 18996..19196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1670.4529.1prot_L-elsbetiae_contig1670.4529.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1670 18996..19196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1670.4529.1

>prot_L-elsbetiae_contig1670.4529.1 ID=prot_L-elsbetiae_contig1670.4529.1|Name=mRNA_L-elsbetiae_contig1670.4529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
MGFSKIDEIKSLTDIELENEILNIKKQLFNLRLRRGTRQSFKAHQFKHAR
RRLRQLLMIKKDHLEN*
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mRNA from alignment at L-elsbetiae_contig1670:18996..19196-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1670.4529.1 ID=mRNA_L-elsbetiae_contig1670.4529.1|Name=mRNA_L-elsbetiae_contig1670.4529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=201bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:18996..19196- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGTTTTCAAAAATTGATGAAATTAAAAGTCTCACAGATATAGAATT
AGAAAATGAAATTTTAAATATAAAAAAACAATTATTTAATTTACGTTTAC
GTCGTGGAACAAGACAATCTTTTAAAGCTCATCAATTTAAACATGCTCGA
CGAAGATTAAGACAATTATTAATGATAAAAAAAGACCATTTAGAAAATTA
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1670:18996..19196-

>mRNA_L-elsbetiae_contig1670.4529.1 ID=mRNA_L-elsbetiae_contig1670.4529.1|Name=mRNA_L-elsbetiae_contig1670.4529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:18996..19196- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGTTTTCAAAAATTGATGAAATTAAAAGTCTCACAGATATAGAATT
AGAAAATGAAATTTTAAATATAAAAAAACAATTATTTAATTTACGTTTAC
GTCGTGGAACAAGACAATCTTTTAAAGCTCATCAATTTAAACATGCTCGA
CGAAGATTAAGACAATTATTAATGATAAAAAAAGACCATTTAGAAAATTA
AATGGGGTTTTCAAAAATTGATGAAATTAAAAGTCTCACAGATATAGAAT
TAGAAAATGAAATTTTAAATATAAAAAAACAATTATTTAATTTACGTTTA
CGTCGTGGAACAAGACAATCTTTTAAAGCTCATCAATTTAAACATGCTCG
ACGAAGATTAAGACAATTATTAATGATAAAAAAAGACCATTTAGAAAATT
AA
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