mRNA_L-elsbetiae_contig1670.4528.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1670.4528.1
Unique NamemRNA_L-elsbetiae_contig1670.4528.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1670.4528.1 vs. uniprot
Match: A0A8E5XRJ8_9PHAE (50S ribosomal protein L14, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRJ8_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 1.440e-67
Identity = 105/121 (86.78%), Postives = 113/121 (93.39%), Query Frame = 1 
Query:    1 MIQPQTYLTIADNTGAKKIMCIRVLGDNRQYAKIGDIIVGVVKEAIPNMLVKRSDIILAVIIRTKKITSRKDGTSIRFDDNAAVIINSDKNPKGTRIFGPIAREIRDKEFIKIVSLASEVI 363
            MIQPQTYLT+ADNTGAKKIMCIR+LG NR YAK+GDIIVGVVKEA PNML+KRSDI+ AVIIRT+K+ SRKDGTSIRFDDNAAVIIN DKNP+GTRIFGPIAREIRDKEF KIVSLA EVI
Sbjct:    1 MIQPQTYLTVADNTGAKKIMCIRILGGNRHYAKLGDIIVGVVKEAAPNMLIKRSDIVKAVIIRTRKVVSRKDGTSIRFDDNAAVIINVDKNPRGTRIFGPIAREIRDKEFTKIVSLAPEVI 121
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BLAST of mRNA_L-elsbetiae_contig1670.4528.1 vs. uniprot
Match: A0A0R6M4Y3_UNDPI (50S ribosomal protein L14, chloroplastic n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4Y3_UNDPI)

HSP 1 Score: 204 bits (520), Expect = 3.400e-66
Identity = 104/121 (85.95%), Postives = 111/121 (91.74%), Query Frame = 1 
Query:    1 MIQPQTYLTIADNTGAKKIMCIRVLGDNRQYAKIGDIIVGVVKEAIPNMLVKRSDIILAVIIRTKKITSRKDGTSIRFDDNAAVIINSDKNPKGTRIFGPIAREIRDKEFIKIVSLASEVI 363
            MIQPQTYLT+ADNTGAKKIMCIRVLG  R+YAK+GDII+GVVKEA PNML KRSDI+ AV+IRTKK  SRKDGTSIRFDDNAAVIIN DKNPKGTRIFGPIAREIRDK+F KIVSLA EVI
Sbjct:    1 MIQPQTYLTVADNTGAKKIMCIRVLGGRRKYAKLGDIIIGVVKEATPNMLTKRSDIVKAVVIRTKKAASRKDGTSIRFDDNAAVIINMDKNPKGTRIFGPIAREIRDKDFTKIVSLAPEVI 121
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BLAST of mRNA_L-elsbetiae_contig1670.4528.1 vs. uniprot
Match: A0A7S6U9Y5_9STRA (50S ribosomal protein L14, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Y5_9STRA)

HSP 1 Score: 199 bits (507), Expect = 3.260e-64
Identity = 99/121 (81.82%), Postives = 113/121 (93.39%), Query Frame = 1 
Query:    1 MIQPQTYLTIADNTGAKKIMCIRVLGDNRQYAKIGDIIVGVVKEAIPNMLVKRSDIILAVIIRTKKITSRKDGTSIRFDDNAAVIINSDKNPKGTRIFGPIAREIRDKEFIKIVSLASEVI 363
            MIQ QT LTIADNTGAKK+MCIRVLG NR+YA++GDII+GVVKEA+PNM++KRSDI+ AVI+RTKK  SRKDGT+IRFDDNAAV+IN+DKNP+GTRIFGPIAREIRDKEF KIVSLA EVI
Sbjct:    1 MIQTQTCLTIADNTGAKKLMCIRVLGGNRKYAQVGDIIIGVVKEALPNMIIKRSDIVRAVIVRTKKAVSRKDGTNIRFDDNAAVVINNDKNPRGTRIFGPIAREIRDKEFTKIVSLAPEVI 121
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BLAST of mRNA_L-elsbetiae_contig1670.4528.1 vs. uniprot
Match: B2XTE5_HETAK (50S ribosomal protein L14, chloroplastic n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTE5_HETAK)

HSP 1 Score: 194 bits (494), Expect = 3.130e-62
Identity = 96/121 (79.34%), Postives = 109/121 (90.08%), Query Frame = 1 
Query:    1 MIQPQTYLTIADNTGAKKIMCIRVLGDNRQYAKIGDIIVGVVKEAIPNMLVKRSDIILAVIIRTKKITSRKDGTSIRFDDNAAVIINSDKNPKGTRIFGPIAREIRDKEFIKIVSLASEVI 363
            MIQPQT LT+ADNTGAKK+MCIRVLG NR YA IGDII+GVVK+AIPNM  KRSDI+ AV++RTKK   RKDG SIRFDDNAAVIIN+D NPKGTRIFGPIAREIRD++F+KIVSLA+EV+
Sbjct:    1 MIQPQTLLTVADNTGAKKVMCIRVLGGNRSYASIGDIIIGVVKDAIPNMATKRSDIVRAVVVRTKKTIRRKDGLSIRFDDNAAVIINNDNNPKGTRIFGPIAREIRDRDFMKIVSLAAEVV 121
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4528.1 vs. uniprot
Match: A0A0D3MKZ3_9STRA (50S ribosomal protein L14 n=1 Tax=Ochromonas sp. CCMP1393 TaxID=420556 RepID=A0A0D3MKZ3_9STRA)

HSP 1 Score: 191 bits (484), Expect = 1.050e-60
Identity = 90/121 (74.38%), Postives = 112/121 (92.56%), Query Frame = 1 
Query:    1 MIQPQTYLTIADNTGAKKIMCIRVLGDNRQYAKIGDIIVGVVKEAIPNMLVKRSDIILAVIIRTKKITSRKDGTSIRFDDNAAVIINSDKNPKGTRIFGPIAREIRDKEFIKIVSLASEVI 363
            MIQPQTYL++ADNTGAKK+MCIRVLG+NR+YAK+GDII+GVVK+AIPNM +KRS+I+ AVI+RT+K   R DG ++RFDDNAAVIIN++ NP+GTR+FGP+AREIRDK+F KI+SLASEVI
Sbjct:    1 MIQPQTYLSVADNTGAKKLMCIRVLGNNRKYAKVGDIIIGVVKDAIPNMAIKRSNIVRAVIVRTRKTIKRADGMALRFDDNAAVIINTENNPRGTRVFGPVAREIRDKKFTKIISLASEVI 121
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4528.1 vs. uniprot
Match: B7T1X4_VAULI (50S ribosomal protein L14, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1X4_VAULI)

HSP 1 Score: 189 bits (481), Expect = 3.000e-60
Identity = 97/121 (80.17%), Postives = 108/121 (89.26%), Query Frame = 1 
Query:    1 MIQPQTYLTIADNTGAKKIMCIRVLGDNRQYAKIGDIIVGVVKEAIPNMLVKRSDIILAVIIRTKKITSRKDGTSIRFDDNAAVIINSDKNPKGTRIFGPIAREIRDKEFIKIVSLASEVI 363
            MIQ Q+YLT+ADNTGAKKIMCI VLG NRQYAK+GDII+GVVKEAIPNM +KRSDII AV++RTKK   R DGT I+FDDNAAVIIN +KNP+GTRIFGPIAREIRDKEF KIVSLA EV+
Sbjct:    1 MIQSQSYLTVADNTGAKKIMCICVLGGNRQYAKVGDIIIGVVKEAIPNMPIKRSDIIRAVVVRTKKAIKRIDGTLIQFDDNAAVIINLEKNPRGTRIFGPIAREIRDKEFSKIVSLAPEVL 121
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4528.1 vs. uniprot
Match: A0A3G2QYE3_9STRA (Ribosomal protein L14 n=4 Tax=Mallomonadaceae TaxID=420617 RepID=A0A3G2QYE3_9STRA)

HSP 1 Score: 187 bits (475), Expect = 2.460e-59
Identity = 89/121 (73.55%), Postives = 108/121 (89.26%), Query Frame = 1 
Query:    1 MIQPQTYLTIADNTGAKKIMCIRVLGDNRQYAKIGDIIVGVVKEAIPNMLVKRSDIILAVIIRTKKITSRKDGTSIRFDDNAAVIINSDKNPKGTRIFGPIAREIRDKEFIKIVSLASEVI 363
            MIQPQTYLTIADNTGAKK+MCIRVLG+NR+YA +GDII+GVVK+A+PNM VKRS ++ AV++RTKK   R DG  IRFDDNAAVIIN++ NPKGTR+FGP+AREIR+K F KI+SLA+EV+
Sbjct:    1 MIQPQTYLTIADNTGAKKLMCIRVLGNNRKYANVGDIIIGVVKDALPNMAVKRSSVVRAVVVRTKKTIRRIDGMGIRFDDNAAVIINTENNPKGTRVFGPVAREIREKNFTKIISLATEVV 121
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BLAST of mRNA_L-elsbetiae_contig1670.4528.1 vs. uniprot
Match: A0A516ZAI1_9STRA (50S ribosomal protein L14, chloroplastic n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAI1_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.420e-58
Identity = 89/121 (73.55%), Postives = 105/121 (86.78%), Query Frame = 1 
Query:    1 MIQPQTYLTIADNTGAKKIMCIRVLGDNRQYAKIGDIIVGVVKEAIPNMLVKRSDIILAVIIRTKKITSRKDGTSIRFDDNAAVIINSDKNPKGTRIFGPIAREIRDKEFIKIVSLASEVI 363
            MIQPQTYLT+ADNTGAKKIMCIR+LG+N+QY  IGD+I+GVVKEA PNM VK+SD++ AV++RT     RKDG SIRFDDNAAVIIN + NP+GTR+FGPIAREIRD+ F KIVSLA EV+
Sbjct:    1 MIQPQTYLTVADNTGAKKIMCIRILGNNKQYGSIGDVIIGVVKEATPNMPVKKSDVVRAVVVRTSHTLRRKDGMSIRFDDNAAVIINKENNPRGTRVFGPIAREIRDRNFTKIVSLAPEVL 121
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4528.1 vs. uniprot
Match: A0A516ZA13_9STRA (50S ribosomal protein L14, chloroplastic n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A516ZA13_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.870e-58
Identity = 90/121 (74.38%), Postives = 105/121 (86.78%), Query Frame = 1 
Query:    1 MIQPQTYLTIADNTGAKKIMCIRVLGDNRQYAKIGDIIVGVVKEAIPNMLVKRSDIILAVIIRTKKITSRKDGTSIRFDDNAAVIINSDKNPKGTRIFGPIAREIRDKEFIKIVSLASEVI 363
            MIQPQTYLTIADNTGA+KIMCIR+LG NR+Y +IGD+I+GVVK+A PNM +KRSDI+ AV++RT+    R DG SIRFDDNAAVIIN + NP+GTRIFGPIAREIRDK F KIVSLA EV+
Sbjct:    1 MIQPQTYLTIADNTGARKIMCIRILGGNRKYGRIGDVIIGVVKDASPNMPIKRSDIVRAVVVRTRHTVRRNDGMSIRFDDNAAVIINKENNPRGTRIFGPIAREIRDKRFTKIVSLAPEVL 121
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4528.1 vs. uniprot
Match: A0A451FMN6_9STRA (Ribosomal protein L14 n=1 Tax=Eustigmatophyceae sp. Mont 10/10-1w TaxID=2506145 RepID=A0A451FMN6_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.870e-58
Identity = 87/121 (71.90%), Postives = 106/121 (87.60%), Query Frame = 1 
Query:    1 MIQPQTYLTIADNTGAKKIMCIRVLGDNRQYAKIGDIIVGVVKEAIPNMLVKRSDIILAVIIRTKKITSRKDGTSIRFDDNAAVIINSDKNPKGTRIFGPIAREIRDKEFIKIVSLASEVI 363
            MIQPQ+YL + DNTGAKKIMCI+VLG NR+Y KIGD+I+GVVKEAIPNM +KRSDI+ AVI+RTK +  R DGT+++FDDNAAVIIN D NP+GTR+FGP+AREIR+K F+KI SLA EV+
Sbjct:    1 MIQPQSYLNVVDNTGAKKIMCIKVLGSNRRYGKIGDVIIGVVKEAIPNMPIKRSDIVRAVIVRTKHLIQRNDGTALQFDDNAAVIINLDNNPRGTRVFGPVAREIREKNFVKIASLAFEVV 121
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1670.4528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8E5XRJ8_9PHAE1.440e-6786.7850S ribosomal protein L14, chloroplastic n=1 Tax=I... [more]
A0A0R6M4Y3_UNDPI3.400e-6685.9550S ribosomal protein L14, chloroplastic n=55 Tax=... [more]
A0A7S6U9Y5_9STRA3.260e-6481.8250S ribosomal protein L14, chloroplastic n=1 Tax=S... [more]
B2XTE5_HETAK3.130e-6279.3450S ribosomal protein L14, chloroplastic n=2 Tax=H... [more]
A0A0D3MKZ3_9STRA1.050e-6074.3850S ribosomal protein L14 n=1 Tax=Ochromonas sp. C... [more]
B7T1X4_VAULI3.000e-6080.1750S ribosomal protein L14, chloroplastic n=1 Tax=V... [more]
A0A3G2QYE3_9STRA2.460e-5973.55Ribosomal protein L14 n=4 Tax=Mallomonadaceae TaxI... [more]
A0A516ZAI1_9STRA1.420e-5873.5550S ribosomal protein L14, chloroplastic n=2 Tax=D... [more]
A0A516ZA13_9STRA2.870e-5874.3850S ribosomal protein L14, chloroplastic n=1 Tax=F... [more]
A0A451FMN6_9STRA2.870e-5871.90Ribosomal protein L14 n=1 Tax=Eustigmatophyceae sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1670contigL-elsbetiae_contig1670:18341..18706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.1
Seed ortholog evalue9.5e-51
Seed eggNOG ortholog2880.D1J742
Preferred namerpl14
KEGG koko:K02874
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0008150,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009547,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0031974,GO:0031976,GO:0031984,GO:0032991,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043253,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0070013,GO:0070180,GO:0097159,GO:0098798,GO:1901363,GO:1990904
EggNOG free text desc.large ribosomal subunit rRNA binding
EggNOG OGsCOG0093@1,KOG0901@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size366
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.614207-CDS-L-elsbetiae_contig1670:18340..187061622815694.614207-CDS-L-elsbetiae_contig1670:18340..18706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1670 18341..18706 -
1691683042.869133-CDS-L-elsbetiae_contig1670:18340..187061691683042.869133-CDS-L-elsbetiae_contig1670:18340..18706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1670 18341..18706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1670.4528.1prot_L-elsbetiae_contig1670.4528.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1670 18341..18706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1670.4528.1

>prot_L-elsbetiae_contig1670.4528.1 ID=prot_L-elsbetiae_contig1670.4528.1|Name=mRNA_L-elsbetiae_contig1670.4528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MIQPQTYLTIADNTGAKKIMCIRVLGDNRQYAKIGDIIVGVVKEAIPNML
VKRSDIILAVIIRTKKITSRKDGTSIRFDDNAAVIINSDKNPKGTRIFGP
IAREIRDKEFIKIVSLASEVI*
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mRNA from alignment at L-elsbetiae_contig1670:18341..18706-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1670.4528.1 ID=mRNA_L-elsbetiae_contig1670.4528.1|Name=mRNA_L-elsbetiae_contig1670.4528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:18341..18706- (Laminarionema elsbetiae ELsaHSoW15)
ATGATACAACCACAAACTTATTTAACAATAGCTGATAATACAGGTGCAAA
GAAAATTATGTGTATTCGAGTATTAGGTGATAATCGCCAATACGCTAAAA
TAGGAGATATTATTGTTGGGGTTGTTAAAGAAGCAATACCAAATATGCTA
GTTAAACGTTCCGATATTATATTAGCAGTTATTATTAGAACAAAAAAAAT
AACATCACGTAAAGATGGTACAAGTATTCGTTTTGATGATAATGCTGCTG
TGATAATTAATTCTGATAAAAACCCAAAAGGTACAAGGATTTTTGGGCCT
ATTGCACGTGAAATAAGGGATAAAGAGTTTATTAAAATTGTATCATTAGC
TTCTGAGGTAATTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1670:18341..18706-

>mRNA_L-elsbetiae_contig1670.4528.1 ID=mRNA_L-elsbetiae_contig1670.4528.1|Name=mRNA_L-elsbetiae_contig1670.4528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:18341..18706- (Laminarionema elsbetiae ELsaHSoW15)
ATGATACAACCACAAACTTATTTAACAATAGCTGATAATACAGGTGCAAA
GAAAATTATGTGTATTCGAGTATTAGGTGATAATCGCCAATACGCTAAAA
TAGGAGATATTATTGTTGGGGTTGTTAAAGAAGCAATACCAAATATGCTA
GTTAAACGTTCCGATATTATATTAGCAGTTATTATTAGAACAAAAAAAAT
AACATCACGTAAAGATGGTACAAGTATTCGTTTTGATGATAATGCTGCTG
TGATAATTAATTCTGATAAAAACCCAAAAGGTACAAGGATTTTTGGGCCT
ATTGCACGTGAAATAAGGGATAAAGAGTTTATTAAAATTGTATCATTAGC
TTCTGAGGTAATTTAAATGATACAACCACAAACTTATTTAACAATAGCTG
ATAATACAGGTGCAAAGAAAATTATGTGTATTCGAGTATTAGGTGATAAT
CGCCAATACGCTAAAATAGGAGATATTATTGTTGGGGTTGTTAAAGAAGC
AATACCAAATATGCTAGTTAAACGTTCCGATATTATATTAGCAGTTATTA
TTAGAACAAAAAAAATAACATCACGTAAAGATGGTACAAGTATTCGTTTT
GATGATAATGCTGCTGTGATAATTAATTCTGATAAAAACCCAAAAGGTAC
AAGGATTTTTGGGCCTATTGCACGTGAAATAAGGGATAAAGAGTTTATTA
AAATTGTATCATTAGCTTCTGAGGTAATTTAA
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