mRNA_L-elsbetiae_contig1670.4526.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1670.4526.1
Unique NamemRNA_L-elsbetiae_contig1670.4526.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1670.4526.1 vs. uniprot
Match: M2XXY3_GALSU (DNA-directed RNA polymerase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XXY3_GALSU)

HSP 1 Score: 365 bits (938), Expect = 1.080e-118
Identity = 197/427 (46.14%), Postives = 292/427 (68.38%), Query Frame = 1
Query:   19 KKIKRTILKGIIHIQSTYNNTIVTITDLNGNTLSWASAGTVDFKGSRKSTPFAAQKAAEQATIKAKELYGLKRVNVIIKGPGSGREPAIRGVHLNKIKILSIKDVTQIAYNGCRPPKRRRY---CIESNLKTPTNHFGRFVFEPLDIGQGTSIGTMLRRALIADLVGFRIIGIRIAGINNEFSIIPGIREDVLEIILNLKEIIFKSDLTETTYVRLRIQGPCIVTADYLKLPPGIEILNPHNHILTISDNSVFEIEIKLKSGKGYNLAEESKTDEFLDYIPIDSNFMPVSKINFFTEEIEPLLESKKEKLFLDIWTNGSITPEESIKRATIVLMSWLINIQNIKPYQQIQIIKNSSQNIKKDKNNNIPIEILQLSPRLCNILKKSKINYIQELKKWTRDDLLEIKNLGPKSVDEIQTKLTNYFELII 1290
            KK K+ I  GI HI+ST+NNTIV ITD+NGNT++WASAG V FKG++K+TPFAAQ  AE+A  +A E  G+++  + I GPGSGRE AIR +    +KI +IKD+T I +NGCRPPKRRR    C+ES  + PTN +G+F+  PL+ GQG ++G  LRR ++A+L G  I  +RI+G+N+EF+ + G+REDVL+I+LNLK+IIFKSDL E  ++RL++ GP IVTA  L+LP  +E+++P  +I TI +N+  E+E+K++ GKGY+L  +   +   + + +D+ +MP+ K+ F  +E         EKL L+I TNGSITP+E+I +A+ + +  L  ++ I   +  +  K++SQ  KK   + +PIE L LS R  N LK+++I  + +L  ++ +DLLEIKN G KS +E+   L NY  + +
Sbjct:  111 KKQKKNIYNGITHIKSTFNNTIVNITDINGNTIAWASAGQVGFKGAKKATPFAAQTTAEKAGKQALE-NGMRQTEIRINGPGSGRETAIRALQALGLKITTIKDITPIPHNGCRPPKRRRLQIECLESFNQNPTNQYGKFIIYPLNKGQGITLGNALRRIMLAELEGLAISSVRISGVNHEFTTVEGVREDVLDILLNLKQIIFKSDLDEPQFIRLKVSGPSIVTASDLELPTRLELVDPRQYIATIDNNTNLEMEMKIEKGKGYDLVNKKTGENLTESLKVDAVYMPIRKVMFHVKEQYNGESLLFEKLILEIITNGSITPKEAIIKASDIFIKMLEPLKEI-AIESEEENKDNSQEEKKL--HQVPIEELHLSVRAYNCLKRAQIFSVADLLDYSEEDLLEIKNFGYKSAEEVMQALQNYLGITL 533          
BLAST of mRNA_L-elsbetiae_contig1670.4526.1 vs. uniprot
Match: A0A8E5XRJ1_9PHAE (DNA-directed RNA polymerase subunit alpha n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRJ1_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 7.050e-88
Identity = 143/306 (46.73%), Postives = 211/306 (68.95%), Query Frame = 1
Query:  382 CIESNLKTPTNHFGRFVFEPLDIGQGTSIGTMLRRALIADLVGFRIIGIRIAGINNEFSIIPGIREDVLEIILNLKEIIFKSDLTETTYVRLRIQGPCIVTADYLKLPPGIEILNPHNHILTISDNSVFEIEIKLKSGKGYNLAEESKTDEFLDYIPIDSNFMPVSKINFFTEEI--EPLLESKKEKLFLDIWTNGSITPEESIKRATIVLMSWLINIQNIKPYQQIQIIKNSSQNIK---KDKNNNIPIEILQLSPRLCNILKKSKINYIQELKKWTRDDLLEIKNLGPKSVDEIQTKLTNYFEL 1284
            CIE + KTPT+ FGRFVF+PLD+G G +IG +LRR L++ L G RI  +RIA +NNEF+ I G+RED LEI+LNLKEIIF+S    + + RL++QGP +VTA+ L LPP +E++NP  H+LTISD+S+ E+E++L+ GK Y LAE+ K +   D IPIDSNFMPV K+N++ + +  +  ++ KKE++F D+WTNG++TP+ESI +AT + + WL  IQ +      +I + +    +   K      P+E L LS R    LKK+ IN+++EL ++   DL +I+N G KS+DEI  K++  + +
Sbjct:    8 CIEEDAKTPTDSFGRFVFKPLDVGDGVTIGNLLRRVLLSSLSGLRITAVRIANVNNEFASIEGVREDTLEILLNLKEIIFRSKNIGSGWGRLKVQGPAVVTANSLDLPPEVELVNPFAHLLTISDDSIIELEVRLEWGKSYVLAEDQKIEGPSDLIPIDSNFMPVRKMNYYVKPLFSKDNVDEKKEQVFFDVWTNGTVTPKESIAQATDISLDWLTAIQKMLSSLSKEIQEENKMVPEFPPKQGKAKTPLEELNLSTRAYRSLKKADINFLEELVQYPIGDLKKIRNFGRKSLDEIMEKVSTLYNI 313          
BLAST of mRNA_L-elsbetiae_contig1670.4526.1 vs. uniprot
Match: A0A222AIC1_9CRYP (DNA-directed RNA polymerase subunit alpha n=2 Tax=Chroomonas TaxID=3028 RepID=A0A222AIC1_9CRYP)

HSP 1 Score: 269 bits (687), Expect = 5.880e-84
Identity = 139/292 (47.60%), Postives = 205/292 (70.21%), Query Frame = 1
Query:  382 CIESNLKTPTNHFGRFVFEPLDIGQGTSIGTMLRRALIADLVGFRIIGIRIAGINNEFSIIPGIREDVLEIILNLKEIIFKSDLTETTYVRLRIQGPCIVTADYLKLPPGIEILNPHNHILTISDNSVFEIEIKLKSGKGYNLAEESKTDEFLDYIPIDSNFMPVSKINFFTEEIEPLLESKKEKLFLDIWTNGSITPEESIKRATIVLMSWLINIQNIKPYQQIQIIKNSSQNIKKD-KNNNIPIEILQLSPRLCNILKKSKINYIQELKKWTRDDLLEIKNLGPKSVDEI 1254
            CI+S +  P +H+ +F+ EPLD GQG ++G  LRR L+ADL G  I+ +RIAG+N+EFS IPGIREDVLEI+LNLKEIIFKSD  ETT  R+R+QGP IVTA+  +LPP + +++P  ++ TI  N+V E+E +++ GKGY L E+   +  LD++ IDS FMPV K+N+  E+I       +++L L++WTNGSI+P+E+I +++ +L     N+ N  P + I      SQ++++D K N I IE LQLS R  N LK+++I+ + +L  ++++DLLEIKN G KS +E+
Sbjct:    8 CIDSRIDGPRDHYDKFILEPLDQGQGITVGNSLRRVLLADLQGTAIVSVRIAGVNHEFSTIPGIREDVLEILLNLKEIIFKSDSNETTIGRVRVQGPAIVTANDFELPPELTLVDPKQYVATICGNNVLEMEFRIEKGKGYRLVEKGIDETSLDFLQIDSIFMPVKKVNYIVEDIRYKQNILQDRLILEVWTNGSISPKEAISQSSNILT----NLFN--PLKNINFKSEESQDLQEDSKINQILIEELQLSVRAYNCLKRAQIHSVADLLDYSQEDLLEIKNFGQKSAEEV 293          
BLAST of mRNA_L-elsbetiae_contig1670.4526.1 vs. uniprot
Match: A0A7S6UA03_9STRA (DNA-directed RNA polymerase subunit alpha n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA03_9STRA)

HSP 1 Score: 264 bits (674), Expect = 5.430e-82
Identity = 135/276 (48.91%), Postives = 190/276 (68.84%), Query Frame = 1
Query:  382 CIESNLKTPTNHFGRFVFEPLDIGQGTSIGTMLRRALIADLVGFRIIGIRIAGINNEFSIIPGIREDVLEIILNLKEIIFKSDLTETTYVRLRIQGPCIVTADYLKLPPGIEILNPHNHILTISDNSVFEIEIKLKSGKGYNLAEESKTDEFLDYIPIDSNFMPVSKINFFTEEIEPLLESKKEKLFLDIWTNGSITPEESIKRATIVLMSWLINIQNI-------KPYQQIQIIKNSSQNIKKDKNNNIPIEILQLSPRLCNILKKSKINYIQEL 1188
            C+E N++TPT +FGRFVF+PLD G+G +IG MLRR L+  L G  IIG+RIAG+N+EFS IPG+RED+LE+ILNLK++IFK++  ET + RL++QGP IVTA  L+LP   EI+NP++++ TISDNS+ E+EIK+  GKGY LA++ K +  +D++ IDS FMP++K N+F E     +   KE+L LDIWTNGSITP+E++ +A  +L+ WL  I+NI       K   + Q               +I +E L+LS R  N LK+  IN + +L
Sbjct:    8 CVELNIETPTEYFGRFVFKPLDFGEGITIGNMLRRVLLNGLPGLSIIGVRIAGVNHEFSAIPGVREDILELILNLKQVIFKTESRETCFGRLKVQGPAIVTASSLQLPQYFEIVNPYSYLATISDNSILELEIKIDWGKGYTLAKDQKIEGPVDFLAIDSIFMPITKTNYFVEPFSSEIIVTKEQLILDIWTNGSITPQEALSQAANILIQWLEPIKNIDTNLKESKKKIETQXXXXXXXXXXXXXTKDILLENLKLSSRSYNALKRENINSLNDL 283          
BLAST of mRNA_L-elsbetiae_contig1670.4526.1 vs. uniprot
Match: A0A812TYL6_9DINO (RpoA protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812TYL6_9DINO)

HSP 1 Score: 280 bits (715), Expect = 5.070e-80
Identity = 163/455 (35.82%), Postives = 264/455 (58.02%), Query Frame = 1
Query:   13 KKKKIKRTILKGIIHIQSTYNNTIVTITDLNGNTLSWASAGTVDFKGSRKSTPFAAQKAAEQATIKAKELYGLKRVNVIIKGPGSGREPAIRGVHLNKIKILSIKDVTQIAYNGCRPPKRRRYC----------------------------IESNLKTPTNHFGRFVFEPLDIGQGTSIGTMLRRALIADLVGFRIIGIRIAGINNEFSIIPGIREDVLEIILNLKEIIFKSDLTETTYVRLRIQGPCIVTADYLKLPPGIEILNPHNHILTISDNSVFEIEIKLKSGKGYNLAEE---SKTDEFLDYIPIDSNFMPVSKINFFTEEIEPLLESKKEKLFLDIWTNGSITPEESIKRATIVLMSWLINIQNIKPYQQIQIIKNSSQNIKKD----KNNNIPIEILQLSPRLCNILKKSKINYIQELKKWTRDDLLEIKNLGPKSVDEIQTKLTN 1272
            K+KKI++ ++KGI HIQ+++NNTIVTITD  G TL W SAGT+ FKGSRKSTPFAA +A E    KA+++ G+  + V ++G G+GRE AI G+    +++ +++D T + +NGCRP KRRR                              +  + K  T  FGRF+ EP + G GT++G  LRR L++ L G  I  ++I G ++EF+ IPG+ EDV EIILN+K+++ K +  E   + L   GP  VTAD ++    I ILN  + + T++D   FE+E  +  G+GY  A E   ++ ++ +  IP+D+N+ PV ++ +  E+     ++  +KL +DIWT+G+ TPE+++  A  +L   L            ++ + ++     D    +  N+PI  L+LS R  N L+ ++I+ + +L   +  DLL++++ G  S+ E++ KLT+
Sbjct:    4 KQKKIRKNVVKGIAHIQASFNNTIVTITDTAGETLCWDSAGTIGFKGSRKSTPFAATRAGESCGAKARKM-GMIEIEVRLRGSGAGRESAINGLVSKGLRVSALEDHTPVPHNGCRPRKRRRKAPAATGRAADSAEQTHGSSSWRGLELPSKVNVDPKFATETFGRFIVEPFERGFGTTVGNSLRRVLLSSLEGAAITNVKIKGADHEFTTIPGVMEDVTEIILNVKDLVVKLEGDEPKTMTLAAGGPGEVTADLIEADTAITILNKDHVLATLTDEITFEMEFTVAKGRGYVPASEQYNNQEEQEIGVIPVDANYSPVQRVRYKVEDTRVGQKTNYDKLIMDIWTDGTTTPEDALVEAAKILRKHLNAFVQFFEVGVERVSEAAAAAASVDDELIRKLNMPITELELSVRASNCLESAQIDTVAQLVTKSESDLLKVRSFGKTSLREVKRKLTD 457          
BLAST of mRNA_L-elsbetiae_contig1670.4526.1 vs. uniprot
Match: UPI001FCD5B8A (RNA polymerase alpha subunit n=1 Tax=Glaucosphaera vacuolata TaxID=38265 RepID=UPI001FCD5B8A)

HSP 1 Score: 256 bits (655), Expect = 2.180e-79
Identity = 132/293 (45.05%), Postives = 197/293 (67.24%), Query Frame = 1
Query:  400 KTPTNHFGRFVFEPLDIGQGTSIGTMLRRALIADLVGFRIIGIRIAGINNEFSIIPGIREDVLEIILNLKEIIFKSDLTETTYVRLRIQGPCIVTADYLKLPPGIEILNPHNHILTISDNSVFEIEIKLKSGKGYNLAEESKTDEFLDYIPIDSNFMPVSKINFFTEEIEPLLESKKEKLFLDIWTNGSITPEESIKRATIVLMSWLINIQNIKPYQQIQIIKNSSQNIKKDKNNNIPIEILQLSPRLCNILKKSKINYIQELKKWTRDDLLEIKNLGPKSVDEIQTKLTNYF 1278
            K P NH+GRF+ EPL  GQG +IG  LRR L+ DL G  I+ IRI GI++EF+ IPG+REDVLEI+LNLK+IIFKS++TE    R+++QGP +VTA   +LP  I I++P  +I TI +N++FE+E +++ G+ Y + E+   + F D++PID+ F PV + N+  EEI      + +KL ++IWTNGS +PEE++ +A+ +L      ++N+K  Q+++ +K           N I IE LQLS R  N LK++KI++I +L ++  +DLLEIKN G KS DE+   L++ F
Sbjct:   14 KKPRNHYGRFLIEPLKQGQGITIGNALRRTLLTDLTGTAIVAIRIVGIDHEFTCIPGVREDVLEILLNLKQIIFKSNITEPQIGRVKVQGPAVVTAGLFELPSEIGIVDPSQYIATICNNTIFEMEFRIEQGQAYRIVEKGIDNTFADFLPIDAIFAPVMQANYEVEEI------RVKKLMIEIWTNGSCSPEEALSKASNILSQIFYTLKNLKYVQKVKYVKI----------NQISIEELQLSVRAYNCLKRAKIHFISDLLEYNYEDLLEIKNFGQKSADEVMAALSDRF 290          
BLAST of mRNA_L-elsbetiae_contig1670.4526.1 vs. uniprot
Match: A0A4D6WZP7_9FLOR (DNA-directed RNA polymerase subunit alpha n=1 Tax=Sphondylothamnion multifidum TaxID=193186 RepID=A0A4D6WZP7_9FLOR)

HSP 1 Score: 255 bits (652), Expect = 8.970e-79
Identity = 134/292 (45.89%), Postives = 193/292 (66.10%), Query Frame = 1
Query:  382 CIESNLKTPTNHFGRFVFEPLDIGQGTSIGTMLRRALIADLVGFRIIGIRIAGINNEFSIIPGIREDVLEIILNLKEIIFKSDLTETTYVRLRIQGPCIVTADYLKLPPGIEILNPHNHILTISDNSVFEIEIKLKSGKGYNLAEESKTDEFLDYIPIDSNFMPVSKINFFTEEIEPLLESKKEKLFLDIWTNGSITPEESIKRATIVLMSWLINIQNIKPYQQIQIIKNSSQNIKKDKN-NNIPIEILQLSPRLCNILKKSKINYIQELKKWTRDDLLEIKNLGPKSVDEI 1254
            CIESN K     +G FV EPL  GQG ++G  LRR +++DL G  I+ +RIAGIN+EFS I G+REDVLEI+LNLKE+I KS  +E    R+RIQGP ++T+    LP  +EI++P  +I T+ +N++FE+E +++ GKGY L E+   ++ +D++ ID+ FMP  K N+  EE +    + +EKLFL+IWTNGS++P+E+I +   VL +         P   I     S+  + KDK  N IPIE LQLS R  N LK+++IN I +L  +++D+LLEIKN G KS +E+
Sbjct:    8 CIESNTKGAREQYGHFVLEPLKRGQGITVGNSLRRTILSDLEGTAIVAVRIAGINHEFSTITGVREDVLEILLNLKEVILKSYSSEPQIGRIRIQGPAVITSGLFDLPTEVEIIDPKQYIATVCNNTIFEMEFRIEKGKGYRLIEKGIDNKSIDFLQIDAVFMPAKKFNYTIEEKKINTNTIEEKLFLEIWTNGSLSPQEAISQGADVLTNLF------HPLTNINFKTKSTNEVNKDKQINQIPIEELQLSVRAYNCLKRAQINSIADLLHYSQDELLEIKNFGQKSAEEV 293          
BLAST of mRNA_L-elsbetiae_contig1670.4526.1 vs. uniprot
Match: A0A1C9CD00_9RHOD (DNA-directed RNA polymerase subunit alpha n=1 Tax=Bangiopsis subsimplex TaxID=139980 RepID=A0A1C9CD00_9RHOD)

HSP 1 Score: 255 bits (652), Expect = 1.050e-78
Identity = 129/299 (43.14%), Postives = 196/299 (65.55%), Query Frame = 1
Query:  382 CIESNLKTPTNHFGRFVFEPLDIGQGTSIGTMLRRALIADLVGFRIIGIRIAGINNEFSIIPGIREDVLEIILNLKEIIFKSDLTETTYVRLRIQGPCIVTADYLKLPPGIEILNPHNHILTISDNSVFEIEIKLKSGKGYNLAEESKTDEFLDYIPIDSNFMPVSKINFFTEEIEPLLESKKEKLFLDIWTNGSITPEESIKRATIVLMSWLINIQNIKPYQQIQIIKNSSQNIKKDKNNNIPIEILQLSPRLCNILKKSKINYIQELKKWTRDDLLEIKNLGPKSVDEIQTKLTNYF 1278
            C+ES +  P +H+G+F   PL   Q  +IG  LRR L++DL G  I  +++AG+N+EFS I G+REDVLEI+LNLK IIF++ +  +   R+R+QGP IVTA  L+LPPG+E+++P  +I TI +NS+FE+E +L++  GY +      ++ LD+I IDS FMPV K+NFF +E +     +KE L L++WTNGS+TP+E++ ++  +L     +++N+    + + I  +  N  +     IPIE LQLS R  N LK+++IN I +L  ++ ++LLEIKN G KS DE+   L   F
Sbjct:    8 CLESRIDKPRDHYGQFAISPLRSSQAITIGNALRRTLLSDLEGTAIAAVKLAGVNHEFSTISGVREDVLEILLNLKSIIFRTQIQNSGLGRVRVQGPGIVTAGLLELPPGVELVDPRQYIATICNNSIFELEFRLETNTGYKIVNRGVDEKSLDFIQIDSKFMPVKKVNFFMDETQSNNLFEKETLLLEVWTNGSLTPQEAVSQSASLLTKLFNSLKNLDFKCETEDISTNEHNTAQ-----IPIEELQLSVRAYNCLKRAQINSISDLLNYSNEELLEIKNFGQKSADEVIDALYKRF 301          
BLAST of mRNA_L-elsbetiae_contig1670.4526.1 vs. uniprot
Match: A0A0B5W2M2_9FLOR (DNA-directed RNA polymerase subunit alpha n=4 Tax=Vertebrata TaxID=1261581 RepID=A0A0B5W2M2_9FLOR)

HSP 1 Score: 255 bits (651), Expect = 1.190e-78
Identity = 135/297 (45.45%), Postives = 193/297 (64.98%), Query Frame = 1
Query:  382 CIESNLKTPTNHFGRFVFEPLDIGQGTSIGTMLRRALIADLVGFRIIGIRIAGINNEFSIIPGIREDVLEIILNLKEIIFKSDLTETTYVRLRIQGPCIVTADYLKLPPGIEILNPHNHILTISDNSVFEIEIKLKSGKGYNLAEESKTDEFLDYIPIDSNFMPVSKINFFTEEIEPLLESKKEKLFLDIWTNGSITPEESIKRATIVLMSWLINIQNIKPYQQIQIIKNSSQNIKKDKNNNIPIEILQLSPRLCNILKKSKINYIQELKKWTRDDLLEIKNLGPKSVDEIQTKLTN 1272
            CIES  K    H+G FV EPL  GQG ++G  LRR ++++L G  I+ +RIAGIN+EFS I G+REDVLEIILNLKE+I KS  TE    R++IQGP ++T+    +PP IEI++P  +I TI  N++FE+E K++ G GY L E+   D+ +D++ ID+ FMP  K N+  EE +      KEKLFL++WTNGSI+P+E+I +   +L      + NI    +  I  N+ + I +     I IE LQLS R  N LK+++IN I +L  +++++LLEIKN G KS +E+   L+N
Sbjct:    8 CIESKTKGAREHYGHFVLEPLQQGQGITVGNSLRRTILSELKGAAIVSVRIAGINHEFSTITGVREDVLEIILNLKEVILKSYSTEPQIGRIKIQGPAVITSGLFDIPPEIEIIDPKQYIATICSNTIFEMEFKIEQGHGYKLVEKGIDDKSIDFLQIDAIFMPAKKFNYRVEEKKINASDIKEKLFLEVWTNGSISPQEAISQGANILTKLFHPLTNISFKSKEDISGNTEKQISQ-----ILIEELQLSVRAYNCLKRAQINSIGDLLDYSQEELLEIKNFGQKSAEEVIEALSN 299          
BLAST of mRNA_L-elsbetiae_contig1670.4526.1 vs. uniprot
Match: A0A1Z1MUL0_9FLOR (DNA-directed RNA polymerase subunit alpha n=1 Tax=Tolypiocladia glomerulata TaxID=860646 RepID=A0A1Z1MUL0_9FLOR)

HSP 1 Score: 255 bits (651), Expect = 1.190e-78
Identity = 134/297 (45.12%), Postives = 193/297 (64.98%), Query Frame = 1
Query:  382 CIESNLKTPTNHFGRFVFEPLDIGQGTSIGTMLRRALIADLVGFRIIGIRIAGINNEFSIIPGIREDVLEIILNLKEIIFKSDLTETTYVRLRIQGPCIVTADYLKLPPGIEILNPHNHILTISDNSVFEIEIKLKSGKGYNLAEESKTDEFLDYIPIDSNFMPVSKINFFTEEIEPLLESKKEKLFLDIWTNGSITPEESIKRATIVLMSWLINIQNIKPYQQIQIIKNSSQNIKKDKNNNIPIEILQLSPRLCNILKKSKINYIQELKKWTRDDLLEIKNLGPKSVDEIQTKLTN 1272
            CIES  K+    +G FV EPL  GQG +IG  LRR ++++L G  I+ +RIAGIN+EFS I G+REDVLEIILNLKE++ KS  TET   R++IQGP ++T     +PP +E+++P  +I TI  N++FE+E K++ G GY L ++   D+ +D++ ID+ FMP  K N+  EE +  L + +EKLFL++WTNGSI+P+E+I     +L      + NI    + +   NS + I     N I IE LQLS R  N LK+ +I+ I +L  +++DDLLEIKN G KS +E+   L+N
Sbjct:    8 CIESKNKSAREQYGHFVLEPLQKGQGITIGNSLRRTILSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLKSYSTETQIGRIKIQGPAVITTGLFDIPPEVEVIDPTQYIATICSNTIFEMEFKIEQGYGYKLVDKGIDDKSIDFLQIDAIFMPAQKFNYKVEEKKLNLNTTQEKLFLEVWTNGSISPQEAISEGASILTQIFHPLTNISFKSKKEAYINSEKQI-----NQILIEELQLSARAYNCLKRVQIHSIADLLNYSQDDLLEIKNFGQKSAEEVIEALSN 299          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1670.4526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M2XXY3_GALSU1.080e-11846.14DNA-directed RNA polymerase n=1 Tax=Galdieria sulp... [more]
A0A8E5XRJ1_9PHAE7.050e-8846.73DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A222AIC1_9CRYP5.880e-8447.60DNA-directed RNA polymerase subunit alpha n=2 Tax=... [more]
A0A7S6UA03_9STRA5.430e-8248.91DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A812TYL6_9DINO5.070e-8035.82RpoA protein (Fragment) n=1 Tax=Symbiodinium necro... [more]
UPI001FCD5B8A2.180e-7945.05RNA polymerase alpha subunit n=1 Tax=Glaucosphaera... [more]
A0A4D6WZP7_9FLOR8.970e-7945.89DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A1C9CD00_9RHOD1.050e-7843.14DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A0B5W2M2_9FLOR1.190e-7845.45DNA-directed RNA polymerase subunit alpha n=4 Tax=... [more]
A0A1Z1MUL0_9FLOR1.190e-7845.12DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1670contigL-elsbetiae_contig1670:12365..13780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.1
Seed ortholog evalue3.5e-100
Seed eggNOG ortholog130081.XP_005705008.1
Preferred namerps13
KEGG rclassRC02795
KEGG koko:K02952,ko:K03040
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03010,ko03020,map00230,map00240,map01100,map03010,map03020
KEGG ModuleM00178,M00179,M00183
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0099@1,COG0100@1,KOG0408@2759,KOG3311@2759
EC2.7.7.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,br01611,ko00000,ko00001,ko00002,ko01000,ko03011,ko03021,ko03400
Exons2
Model size1293
Cds size1293
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.5440118-CDS-L-elsbetiae_contig1670:12364..132811622815694.5440118-CDS-L-elsbetiae_contig1670:12364..13281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1670 12365..13281 -
1691683042.8306494-CDS-L-elsbetiae_contig1670:12364..132811691683042.8306494-CDS-L-elsbetiae_contig1670:12364..13281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1670 12365..13281 -
1622815694.5564082-CDS-L-elsbetiae_contig1670:13404..137801622815694.5564082-CDS-L-elsbetiae_contig1670:13404..13780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1670 13405..13780 -
1691683042.8417757-CDS-L-elsbetiae_contig1670:13404..137801691683042.8417757-CDS-L-elsbetiae_contig1670:13404..13780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1670 13405..13780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1670.4526.1prot_L-elsbetiae_contig1670.4526.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1670 12365..13780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1670.4526.1

>prot_L-elsbetiae_contig1670.4526.1 ID=prot_L-elsbetiae_contig1670.4526.1|Name=mRNA_L-elsbetiae_contig1670.4526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=431bp
NFKIKKKKIKRTILKGIIHIQSTYNNTIVTITDLNGNTLSWASAGTVDFK
GSRKSTPFAAQKAAEQATIKAKELYGLKRVNVIIKGPGSGREPAIRGVHL
NKIKILSIKDVTQIAYNGCRPPKRRRYCIESNLKTPTNHFGRFVFEPLDI
GQGTSIGTMLRRALIADLVGFRIIGIRIAGINNEFSIIPGIREDVLEIIL
NLKEIIFKSDLTETTYVRLRIQGPCIVTADYLKLPPGIEILNPHNHILTI
SDNSVFEIEIKLKSGKGYNLAEESKTDEFLDYIPIDSNFMPVSKINFFTE
EIEPLLESKKEKLFLDIWTNGSITPEESIKRATIVLMSWLINIQNIKPYQ
QIQIIKNSSQNIKKDKNNNIPIEILQLSPRLCNILKKSKINYIQELKKWT
RDDLLEIKNLGPKSVDEIQTKLTNYFELII*
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mRNA from alignment at L-elsbetiae_contig1670:12365..13780-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1670.4526.1 ID=mRNA_L-elsbetiae_contig1670.4526.1|Name=mRNA_L-elsbetiae_contig1670.4526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:12365..13780- (Laminarionema elsbetiae ELsaHSoW15)
AATTTTAAAATAAAAAAAAAAAAAATAAAACGAACTATTTTAAAAGGAAT TATTCATATTCAATCTACTTATAATAATACTATAGTAACTATTACAGATT TAAATGGTAATACTTTATCTTGGGCTTCGGCTGGAACTGTTGATTTTAAA GGATCACGAAAAAGTACCCCATTTGCAGCACAAAAAGCTGCTGAACAAGC AACTATAAAAGCTAAAGAGTTATATGGTTTAAAAAGAGTAAATGTTATTA TTAAAGGCCCCGGTTCTGGTCGAGAACCTGCTATTCGTGGTGTTCATTTA AATAAAATTAAAATTCTTTCTATTAAAGATGTTACCCAAATTGCTTATAA TGGTTGTAGACCACCTAAGCGTCGACGTGTTTAATTTAAAAATAGAAATT ACTAGGAATAAAATTATTCAAAAAATTTGTATATTTGATAAGTTTATATT ATTTTATTATAAACTAATAAAAAAAGGAGGATTATGTTAAATTTTACAGG ATATTGTATTGAATCTAACTTAAAAACTCCTACAAATCATTTTGGACGTT TTGTTTTTGAACCATTAGATATTGGTCAAGGTACTAGTATTGGAACTATG TTACGTCGTGCTTTAATTGCAGATTTAGTTGGGTTTCGAATTATTGGAAT TAGAATTGCAGGTATAAATAATGAATTTTCGATTATTCCAGGTATTCGAG AAGATGTTTTAGAAATAATTTTAAATTTAAAAGAAATAATTTTTAAAAGT GATCTTACTGAAACCACTTATGTTCGATTACGAATACAAGGGCCTTGTAT AGTTACTGCTGATTATTTAAAATTACCACCTGGTATTGAAATTTTAAATC CTCATAATCATATATTAACAATTTCAGATAATTCTGTTTTTGAAATTGAA ATTAAATTAAAAAGTGGTAAAGGATATAATTTAGCCGAAGAATCGAAAAC TGATGAGTTTTTAGATTATATTCCTATTGATTCTAATTTTATGCCTGTCT CTAAAATTAATTTTTTTACTGAAGAAATAGAACCATTATTAGAATCAAAG AAAGAAAAATTATTTCTTGATATTTGGACAAATGGTAGTATTACGCCTGA AGAATCAATAAAACGTGCCACTATTGTGTTAATGAGTTGGTTAATTAATA TTCAAAATATTAAACCTTATCAACAAATTCAAATAATAAAAAATTCTAGT CAAAATATTAAAAAAGATAAAAATAATAATATACCTATTGAAATTTTACA ACTTTCACCACGTTTATGCAATATTTTAAAAAAATCTAAAATTAACTATA TTCAAGAACTTAAGAAATGGACCAGAGATGATTTATTAGAAATAAAAAAC TTAGGGCCCAAATCAGTAGATGAAATTCAAACTAAATTAACAAATTATTT TGAATTAATAATATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1670:12365..13780-

>mRNA_L-elsbetiae_contig1670.4526.1 ID=mRNA_L-elsbetiae_contig1670.4526.1|Name=mRNA_L-elsbetiae_contig1670.4526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2586bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:12365..13780- (Laminarionema elsbetiae ELsaHSoW15)
AATTTTAAAATAAAAAAAAAAAAAATAAAACGAACTATTTTAAAAGGAAT
TATTCATATTCAATCTACTTATAATAATACTATAGTAACTATTACAGATT
TAAATGGTAATACTTTATCTTGGGCTTCGGCTGGAACTGTTGATTTTAAA
GGATCACGAAAAAGTACCCCATTTGCAGCACAAAAAGCTGCTGAACAAGC
AACTATAAAAGCTAAAGAGTTATATGGTTTAAAAAGAGTAAATGTTATTA
TTAAAGGCCCCGGTTCTGGTCGAGAACCTGCTATTCGTGGTGTTCATTTA
AATAAAATTAAAATTCTTTCTATTAAAGATGTTACCCAAATTGCTTATAA
TGGTTGTAGACCACCTAAGCGTCGACAATTTTAAAATAAAAAAAAAAAAA
ATAAAACGAACTATTTTAAAAGGAATTATTCATATTCAATCTACTTATAA
TAATACTATAGTAACTATTACAGATTTAAATGGTAATACTTTATCTTGGG
CTTCGGCTGGAACTGTTGATTTTAAAGGATCACGAAAAAGTACCCCATTT
GCAGCACAAAAAGCTGCTGAACAAGCAACTATAAAAGCTAAAGAGTTATA
TGGTTTAAAAAGAGTAAATGTTATTATTAAAGGCCCCGGTTCTGGTCGAG
AACCTGCTATTCGTGGTGTTCATTTAAATAAAATTAAAATTCTTTCTATT
AAAGATGTTACCCAAATTGCTTATAATGGTTGTAGACCACCTAAGCGTCG
ACGATATTGTATTGAATCTAACTTAAAAACTCCTACAAATCATTTTGGAC
GTTTTGTTTTTGAACCATTAGATATTGGTCAAGGTACTAGTATTGGAACT
ATGTTACGTCGTGCTTTAATTGCAGATTTAGTTGGGTTTCGAATTATTGG
AATTAGAATTGCAGGTATAAATAATGAATTTTCGATTATTCCAGGTATTC
GAGAAGATGTTTTAGAAATAATTTTAAATTTAAAAGAAATAATTTTTAAA
AGTGATCTTACTGAAACCACTTATGTTCGATTACGAATACAAGGGCCTTG
TATAGTTACTGCTGATTATTTAAAATTACCACCTGGTATTGAAATTTTAA
ATCCTCATAATCATATATTAACAATTTCAGATAATTCTGTTTTTGAAATT
GAAATTAAATTAAAAAGTGGTAAAGGATATAATTTAGCCGAAGAATCGAA
AACTGATGAGTTTTTAGATTATATTCCTATTGATTCTAATTTTATGCCTG
TCTCTAAAATTAATTTTTTTACTGAAGAAATAGAACCATTATTAGAATCA
AAGAAAGAAAAATTATTTCTTGATATTTGGACAAATGGTAGTATTACGCC
TGAAGAATCAATAAAACGTGCCACTATTGTGTTAATGAGTTGGTTAATTA
ATATTCAAAATATTAAACCTTATCAACAAATTCAAATAATAAAAAATTCT
AGTCAAAATATTAAAAAAGATAAAAATAATAATATACCTATTGAAATTTT
ACAACTTTCACCACGTTTATGCAATATTTTAAAAAAATCTAAAATTAACT
ATATTCAAGAACTTAAGAAATGGACCAGAGATGATTTATTAGAAATAAAA
AACTTAGGGCCCAAATCAGTAGATGAAATTCAAACTAAATTAACAAATTA
TTTTGAATTAATAATATAAGATATTGTATTGAATCTAACTTAAAAACTCC
TACAAATCATTTTGGACGTTTTGTTTTTGAACCATTAGATATTGGTCAAG
GTACTAGTATTGGAACTATGTTACGTCGTGCTTTAATTGCAGATTTAGTT
GGGTTTCGAATTATTGGAATTAGAATTGCAGGTATAAATAATGAATTTTC
GATTATTCCAGGTATTCGAGAAGATGTTTTAGAAATAATTTTAAATTTAA
AAGAAATAATTTTTAAAAGTGATCTTACTGAAACCACTTATGTTCGATTA
CGAATACAAGGGCCTTGTATAGTTACTGCTGATTATTTAAAATTACCACC
TGGTATTGAAATTTTAAATCCTCATAATCATATATTAACAATTTCAGATA
ATTCTGTTTTTGAAATTGAAATTAAATTAAAAAGTGGTAAAGGATATAAT
TTAGCCGAAGAATCGAAAACTGATGAGTTTTTAGATTATATTCCTATTGA
TTCTAATTTTATGCCTGTCTCTAAAATTAATTTTTTTACTGAAGAAATAG
AACCATTATTAGAATCAAAGAAAGAAAAATTATTTCTTGATATTTGGACA
AATGGTAGTATTACGCCTGAAGAATCAATAAAACGTGCCACTATTGTGTT
AATGAGTTGGTTAATTAATATTCAAAATATTAAACCTTATCAACAAATTC
AAATAATAAAAAATTCTAGTCAAAATATTAAAAAAGATAAAAATAATAAT
ATACCTATTGAAATTTTACAACTTTCACCACGTTTATGCAATATTTTAAA
AAAATCTAAAATTAACTATATTCAAGAACTTAAGAAATGGACCAGAGATG
ATTTATTAGAAATAAAAAACTTAGGGCCCAAATCAGTAGATGAAATTCAA
ACTAAATTAACAAATTATTTTGAATTAATAATATAA
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