mRNA_L-elsbetiae_contig1670.4523.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1670.4523.1
Unique NamemRNA_L-elsbetiae_contig1670.4523.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A8F0FAT7_9PHAE (Photosystem II reaction center Psb28 protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAT7_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 8.810e-52
Identity = 80/114 (70.18%), Postives = 96/114 (84.21%), Query Frame = 1
Query:    1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342
            M A+IQFIKGI+E TIP+I +TRS DGSTGTATF FE+ASI     S + +ITGM+LIDKEG L+T D+  KFI+GKPK +QAIYIMKN EAWDRFMRFMERY+++NDLTFI+A
Sbjct:    1 MKAVIQFIKGIEETTIPIINITRSTDGSTGTATFTFEDASIFYTIVSPESEITGMFLIDKEGTLSTRDINAKFIQGKPKTLQAIYIMKNAEAWDRFMRFMERYSDENDLTFIRA 114          
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A2U9NPW1_9STRA (Photosystem II reaction center Psb28 protein n=1 Tax=Attheya longicornis TaxID=451786 RepID=A0A2U9NPW1_9STRA)

HSP 1 Score: 166 bits (420), Expect = 3.700e-51
Identity = 76/114 (66.67%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342
            M A IQFIKG+DE T+P ++LTRSRDGSTGTATF F+N +ILDK T+K+G+ITGMYL+D+EG+L T DV  +F+ GKP++++AIYIMK+PEAWDRFMRFM RY   N L F KA
Sbjct:    1 MNATIQFIKGLDEKTLPNVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLMDEEGVLETRDVNARFVNGKPEVVEAIYIMKSPEAWDRFMRFMGRYGEINGLVFTKA 114          
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A2U9NN08_9STRA (Photosystem II reaction center Psb28 protein n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A2U9NN08_9STRA)

HSP 1 Score: 166 bits (419), Expect = 5.250e-51
Identity = 78/114 (68.42%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342
            M   IQFI+GI+E  +P ++LTRSRDGSTGTATF F+N +ILDKKT+K+G+ITGMYLID+EGIL T DV  +FI GKP+ I++IYIMK+PEAWDRFMRFMERY + N L F KA
Sbjct:    1 MNVHIQFIRGINETVLPDVRLTRSRDGSTGTATFKFKNPNILDKKTAKEGEITGMYLIDEEGILETRDVNARFINGKPETIESIYIMKSPEAWDRFMRFMERYGDSNGLVFTKA 114          
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A023HA77_9STRA (Photosystem II reaction center Psb28 protein n=1 Tax=Coscinodiscus radiatus TaxID=33642 RepID=A0A023HA77_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.140e-50
Identity = 78/114 (68.42%), Postives = 94/114 (82.46%), Query Frame = 1
Query:    1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342
            M A IQFIKG+DE  +P +KLTRSRDGSTGTATF F+N +ILDK T+K+G+ITGMYLIDKEGI+ T DV  +FI G+P+ I++IYIMK+PEAW+RFMRFMERY   N L F KA
Sbjct:    1 MKAKIQFIKGLDENVLPDVKLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDKEGIIETRDVNARFINGRPEAIESIYIMKSPEAWNRFMRFMERYGEANGLVFTKA 114          
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: PSB28_TRICV (Photosystem II reaction center Psb28 protein n=40 Tax=Sar TaxID=2698737 RepID=PSB28_TRICV)

HSP 1 Score: 164 bits (414), Expect = 3.040e-50
Identity = 78/114 (68.42%), Postives = 93/114 (81.58%), Query Frame = 1
Query:    1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342
            M A IQFIKG+DE  +P ++LTRSRDGSTGTATF F+N +ILDK T+K+G+ITGMYLID+EG L T DV  +FI GKP+ I++IYIMK+PEAWDRFMRFMERY   N L F KA
Sbjct:    1 MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTKA 114          
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A8F5JA77_9STRA (Photosystem II reaction center Psb28 protein n=1 Tax=Chaetoceros curvisetus TaxID=230516 RepID=A0A8F5JA77_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.040e-50
Identity = 77/114 (67.54%), Postives = 92/114 (80.70%), Query Frame = 1
Query:    1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342
            M A IQFIKG+DE  +P ++LTRSRDGSTGTATF F+N +ILDK T+K+G+ITGMYLID+EG L T DV  +F+ GKP+ I+ IYIMKNP+AWDRFMRFMERY   N L F KA
Sbjct:    1 MEAKIQFIKGLDERILPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDEEGTLETRDVNARFVNGKPETIECIYIMKNPDAWDRFMRFMERYGQSNGLVFTKA 114          
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A141BSJ6_9PHAE (Photosystem II reaction center Psb28 protein n=15 Tax=Fucales TaxID=3009 RepID=A0A141BSJ6_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 6.730e-50
Identity = 77/114 (67.54%), Postives = 94/114 (82.46%), Query Frame = 1
Query:    1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342
            M A+IQFIKGI+E TIP+I +TRS DG+TGTATF+FE+AS+     S   +ITGM+LID EG L+T D+  KFI+GKPK +QAIYIMKN EAWDRFMRFMERY+ +N+LTFIKA
Sbjct:    1 MKAVIQFIKGIEETTIPIINITRSPDGTTGTATFIFEDASLFYAGISSQSEITGMFLIDNEGTLSTRDINAKFIQGKPKTLQAIYIMKNAEAWDRFMRFMERYSEQNNLTFIKA 114          
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A089VPL9_9STRA (Photosystem II reaction center Psb28 protein n=8 Tax=Thalassiosirales TaxID=33847 RepID=A0A089VPL9_9STRA)

HSP 1 Score: 162 bits (411), Expect = 8.430e-50
Identity = 76/114 (66.67%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342
            MTA IQFIKGI+E  +P ++LTRSRDGSTGTATF F+NA+ILDK  + +G+ITGMY+ID+EGIL T DV+ +F+ GKP+ +++IYIMK+PEAWDRFMRFMERY   N L F KA
Sbjct:    1 MTANIQFIKGINEKVLPDVRLTRSRDGSTGTATFRFKNANILDKSLALNGEITGMYMIDEEGILETRDVSARFVNGKPQAVESIYIMKSPEAWDRFMRFMERYGESNGLVFTKA 114          
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A8A6KGV3_9STRA (Photosystem II reaction center Psb28 protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A8A6KGV3_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.490e-49
Identity = 75/114 (65.79%), Postives = 93/114 (81.58%), Query Frame = 1
Query:    1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342
            M A IQFI+G+DE  +P ++LTRS+DGSTGTATF F+N ++LDK T K+G+ITGMYLID+EG+L T DV  +FI GKP+ I++IYIMKNPE WDRFMRFMERY+  N L F KA
Sbjct:    1 MEAKIQFIEGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNLLDKSTVKEGEITGMYLIDEEGVLETRDVNARFINGKPEAIESIYIMKNPETWDRFMRFMERYSEANGLVFTKA 114          
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A8F0WFQ5_9STRA (Photosystem II reaction center Psb28 protein n=1 Tax=Nitzschia supralitorea TaxID=303403 RepID=A0A8F0WFQ5_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.490e-49
Identity = 76/114 (66.67%), Postives = 93/114 (81.58%), Query Frame = 1
Query:    1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342
            M A IQFI+G+DE  +P ++LTRSRDGSTGTATF F+N +ILDK T K+G+ITGMYLID+EG+L T DV  +FI GKP+ I++IYIMK+P+AWDRFMRFMERY   N L F KA
Sbjct:    1 MDAKIQFIRGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTIKEGEITGMYLIDQEGVLETRDVNARFINGKPESIESIYIMKSPDAWDRFMRFMERYGETNGLVFTKA 114          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FAT7_9PHAE8.810e-5270.18Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A2U9NPW1_9STRA3.700e-5166.67Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A2U9NN08_9STRA5.250e-5168.42Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A023HA77_9STRA2.140e-5068.42Photosystem II reaction center Psb28 protein n=1 T... [more]
PSB28_TRICV3.040e-5068.42Photosystem II reaction center Psb28 protein n=40 ... [more]
A0A8F5JA77_9STRA3.040e-5067.54Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A141BSJ6_9PHAE6.730e-5067.54Photosystem II reaction center Psb28 protein n=15 ... [more]
A0A089VPL9_9STRA8.430e-5066.67Photosystem II reaction center Psb28 protein n=8 T... [more]
A0A8A6KGV3_9STRA2.490e-4965.79Photosystem II reaction center Psb28 protein n=2 T... [more]
A0A8F0WFQ5_9STRA2.490e-4966.67Photosystem II reaction center Psb28 protein n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1670contigL-elsbetiae_contig1670:4854..5198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue1.5e-37
Seed eggNOG ortholog2880.D1J711
Preferred namepsbW
KEGG koko:K08903
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.photosynthesis
EggNOG OGs2AR4E@1,2RMFI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size345
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.3841925-CDS-L-elsbetiae_contig1670:4853..51981622815694.3841925-CDS-L-elsbetiae_contig1670:4853..5198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1670 4854..5198 +
1691683042.7857227-CDS-L-elsbetiae_contig1670:4853..51981691683042.7857227-CDS-L-elsbetiae_contig1670:4853..5198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1670 4854..5198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1670.4523.1prot_L-elsbetiae_contig1670.4523.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1670 4854..5198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1670.4523.1

>prot_L-elsbetiae_contig1670.4523.1 ID=prot_L-elsbetiae_contig1670.4523.1|Name=mRNA_L-elsbetiae_contig1670.4523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDG
DITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFM
ERYANKNDLTFIKA*
back to top

mRNA from alignment at L-elsbetiae_contig1670:4854..5198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1670.4523.1 ID=mRNA_L-elsbetiae_contig1670.4523.1|Name=mRNA_L-elsbetiae_contig1670.4523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=345bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:4854..5198+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAGCTATCATACAATTTATTAAAGGTATTGATGAACTAACCATACC ATTAATCAAATTAACAAGATCTCGTGATGGTAGCACAGGTACTGCAACTT TTGTTTTTGAAAATGCTAGTATATTAGACAAAAAAACTAGTAAAGACGGT GATATTACAGGAATGTATCTTATTGACAAAGAAGGTATATTAAATACTCT AGATGTTACGGTAAAATTTATTAAAGGTAAACCAAAAATAATTCAAGCAA TTTATATTATGAAAAACCCAGAAGCTTGGGATCGATTTATGCGATTTATG GAACGGTATGCTAATAAAAATGATTTAACATTTATAAAAGCTTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1670:4854..5198+

>mRNA_L-elsbetiae_contig1670.4523.1 ID=mRNA_L-elsbetiae_contig1670.4523.1|Name=mRNA_L-elsbetiae_contig1670.4523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:4854..5198+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAGCTATCATACAATTTATTAAAGGTATTGATGAACTAACCATACC
ATTAATCAAATTAACAAGATCTCGTGATGGTAGCACAGGTACTGCAACTT
TTGTTTTTGAAAATGCTAGTATATTAGACAAAAAAACTAGTAAAGACGGT
GATATTACAGGAATGTATCTTATTGACAAAGAAGGTATATTAAATACTCT
AGATGTTACGGTAAAATTTATTAAAGGTAAACCAAAAATAATTCAAGCAA
TTTATATTATGAAAAACCCAGAAGCTTGGGATCGATTTATGCGATTTATG
GAACGGTATGCTAATAAAAATGATTTAACATTTATAAAAGCTTAAATGAC
AGCTATCATACAATTTATTAAAGGTATTGATGAACTAACCATACCATTAA
TCAAATTAACAAGATCTCGTGATGGTAGCACAGGTACTGCAACTTTTGTT
TTTGAAAATGCTAGTATATTAGACAAAAAAACTAGTAAAGACGGTGATAT
TACAGGAATGTATCTTATTGACAAAGAAGGTATATTAAATACTCTAGATG
TTACGGTAAAATTTATTAAAGGTAAACCAAAAATAATTCAAGCAATTTAT
ATTATGAAAAACCCAGAAGCTTGGGATCGATTTATGCGATTTATGGAACG
GTATGCTAATAAAAATGATTTAACATTTATAAAAGCTTAA
back to top