mRNA_L-elsbetiae_contig1670.4523.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A8F0FAT7_9PHAE (Photosystem II reaction center Psb28 protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAT7_9PHAE) HSP 1 Score: 167 bits (424), Expect = 8.810e-52 Identity = 80/114 (70.18%), Postives = 96/114 (84.21%), Query Frame = 1 Query: 1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342 M A+IQFIKGI+E TIP+I +TRS DGSTGTATF FE+ASI S + +ITGM+LIDKEG L+T D+ KFI+GKPK +QAIYIMKN EAWDRFMRFMERY+++NDLTFI+A Sbjct: 1 MKAVIQFIKGIEETTIPIINITRSTDGSTGTATFTFEDASIFYTIVSPESEITGMFLIDKEGTLSTRDINAKFIQGKPKTLQAIYIMKNAEAWDRFMRFMERYSDENDLTFIRA 114
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A2U9NPW1_9STRA (Photosystem II reaction center Psb28 protein n=1 Tax=Attheya longicornis TaxID=451786 RepID=A0A2U9NPW1_9STRA) HSP 1 Score: 166 bits (420), Expect = 3.700e-51 Identity = 76/114 (66.67%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342 M A IQFIKG+DE T+P ++LTRSRDGSTGTATF F+N +ILDK T+K+G+ITGMYL+D+EG+L T DV +F+ GKP++++AIYIMK+PEAWDRFMRFM RY N L F KA Sbjct: 1 MNATIQFIKGLDEKTLPNVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLMDEEGVLETRDVNARFVNGKPEVVEAIYIMKSPEAWDRFMRFMGRYGEINGLVFTKA 114
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A2U9NN08_9STRA (Photosystem II reaction center Psb28 protein n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A2U9NN08_9STRA) HSP 1 Score: 166 bits (419), Expect = 5.250e-51 Identity = 78/114 (68.42%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342 M IQFI+GI+E +P ++LTRSRDGSTGTATF F+N +ILDKKT+K+G+ITGMYLID+EGIL T DV +FI GKP+ I++IYIMK+PEAWDRFMRFMERY + N L F KA Sbjct: 1 MNVHIQFIRGINETVLPDVRLTRSRDGSTGTATFKFKNPNILDKKTAKEGEITGMYLIDEEGILETRDVNARFINGKPETIESIYIMKSPEAWDRFMRFMERYGDSNGLVFTKA 114
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A023HA77_9STRA (Photosystem II reaction center Psb28 protein n=1 Tax=Coscinodiscus radiatus TaxID=33642 RepID=A0A023HA77_9STRA) HSP 1 Score: 164 bits (415), Expect = 2.140e-50 Identity = 78/114 (68.42%), Postives = 94/114 (82.46%), Query Frame = 1 Query: 1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342 M A IQFIKG+DE +P +KLTRSRDGSTGTATF F+N +ILDK T+K+G+ITGMYLIDKEGI+ T DV +FI G+P+ I++IYIMK+PEAW+RFMRFMERY N L F KA Sbjct: 1 MKAKIQFIKGLDENVLPDVKLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDKEGIIETRDVNARFINGRPEAIESIYIMKSPEAWNRFMRFMERYGEANGLVFTKA 114
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: PSB28_TRICV (Photosystem II reaction center Psb28 protein n=40 Tax=Sar TaxID=2698737 RepID=PSB28_TRICV) HSP 1 Score: 164 bits (414), Expect = 3.040e-50 Identity = 78/114 (68.42%), Postives = 93/114 (81.58%), Query Frame = 1 Query: 1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342 M A IQFIKG+DE +P ++LTRSRDGSTGTATF F+N +ILDK T+K+G+ITGMYLID+EG L T DV +FI GKP+ I++IYIMK+PEAWDRFMRFMERY N L F KA Sbjct: 1 MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTKA 114
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A8F5JA77_9STRA (Photosystem II reaction center Psb28 protein n=1 Tax=Chaetoceros curvisetus TaxID=230516 RepID=A0A8F5JA77_9STRA) HSP 1 Score: 164 bits (414), Expect = 3.040e-50 Identity = 77/114 (67.54%), Postives = 92/114 (80.70%), Query Frame = 1 Query: 1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342 M A IQFIKG+DE +P ++LTRSRDGSTGTATF F+N +ILDK T+K+G+ITGMYLID+EG L T DV +F+ GKP+ I+ IYIMKNP+AWDRFMRFMERY N L F KA Sbjct: 1 MEAKIQFIKGLDERILPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDEEGTLETRDVNARFVNGKPETIECIYIMKNPDAWDRFMRFMERYGQSNGLVFTKA 114
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A141BSJ6_9PHAE (Photosystem II reaction center Psb28 protein n=15 Tax=Fucales TaxID=3009 RepID=A0A141BSJ6_9PHAE) HSP 1 Score: 163 bits (412), Expect = 6.730e-50 Identity = 77/114 (67.54%), Postives = 94/114 (82.46%), Query Frame = 1 Query: 1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342 M A+IQFIKGI+E TIP+I +TRS DG+TGTATF+FE+AS+ S +ITGM+LID EG L+T D+ KFI+GKPK +QAIYIMKN EAWDRFMRFMERY+ +N+LTFIKA Sbjct: 1 MKAVIQFIKGIEETTIPIINITRSPDGTTGTATFIFEDASLFYAGISSQSEITGMFLIDNEGTLSTRDINAKFIQGKPKTLQAIYIMKNAEAWDRFMRFMERYSEQNNLTFIKA 114
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A089VPL9_9STRA (Photosystem II reaction center Psb28 protein n=8 Tax=Thalassiosirales TaxID=33847 RepID=A0A089VPL9_9STRA) HSP 1 Score: 162 bits (411), Expect = 8.430e-50 Identity = 76/114 (66.67%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342 MTA IQFIKGI+E +P ++LTRSRDGSTGTATF F+NA+ILDK + +G+ITGMY+ID+EGIL T DV+ +F+ GKP+ +++IYIMK+PEAWDRFMRFMERY N L F KA Sbjct: 1 MTANIQFIKGINEKVLPDVRLTRSRDGSTGTATFRFKNANILDKSLALNGEITGMYMIDEEGILETRDVSARFVNGKPQAVESIYIMKSPEAWDRFMRFMERYGESNGLVFTKA 114
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A8A6KGV3_9STRA (Photosystem II reaction center Psb28 protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A8A6KGV3_9STRA) HSP 1 Score: 161 bits (408), Expect = 2.490e-49 Identity = 75/114 (65.79%), Postives = 93/114 (81.58%), Query Frame = 1 Query: 1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342 M A IQFI+G+DE +P ++LTRS+DGSTGTATF F+N ++LDK T K+G+ITGMYLID+EG+L T DV +FI GKP+ I++IYIMKNPE WDRFMRFMERY+ N L F KA Sbjct: 1 MEAKIQFIEGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNLLDKSTVKEGEITGMYLIDEEGVLETRDVNARFINGKPEAIESIYIMKNPETWDRFMRFMERYSEANGLVFTKA 114
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Match: A0A8F0WFQ5_9STRA (Photosystem II reaction center Psb28 protein n=1 Tax=Nitzschia supralitorea TaxID=303403 RepID=A0A8F0WFQ5_9STRA) HSP 1 Score: 161 bits (408), Expect = 2.490e-49 Identity = 76/114 (66.67%), Postives = 93/114 (81.58%), Query Frame = 1 Query: 1 MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGDITGMYLIDKEGILNTLDVTVKFIKGKPKIIQAIYIMKNPEAWDRFMRFMERYANKNDLTFIKA 342 M A IQFI+G+DE +P ++LTRSRDGSTGTATF F+N +ILDK T K+G+ITGMYLID+EG+L T DV +FI GKP+ I++IYIMK+P+AWDRFMRFMERY N L F KA Sbjct: 1 MDAKIQFIRGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTIKEGEITGMYLIDQEGVLETRDVNARFINGKPESIESIYIMKSPDAWDRFMRFMERYGETNGLVFTKA 114 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1670.4523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1670.4523.1 >prot_L-elsbetiae_contig1670.4523.1 ID=prot_L-elsbetiae_contig1670.4523.1|Name=mRNA_L-elsbetiae_contig1670.4523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp MTAIIQFIKGIDELTIPLIKLTRSRDGSTGTATFVFENASILDKKTSKDGback to top mRNA from alignment at L-elsbetiae_contig1670:4854..5198+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1670.4523.1 ID=mRNA_L-elsbetiae_contig1670.4523.1|Name=mRNA_L-elsbetiae_contig1670.4523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=345bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:4854..5198+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1670:4854..5198+ >mRNA_L-elsbetiae_contig1670.4523.1 ID=mRNA_L-elsbetiae_contig1670.4523.1|Name=mRNA_L-elsbetiae_contig1670.4523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:4854..5198+ (Laminarionema elsbetiae ELsaHSoW15)back to top |