mRNA_L-elsbetiae_contig16696.4514.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16696.4514.1
Unique NamemRNA_L-elsbetiae_contig16696.4514.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16696.4514.1 vs. uniprot
Match: F5ZEJ2_ALTNA (Uncharacterized protein n=7 Tax=Proteobacteria TaxID=1224 RepID=F5ZEJ2_ALTNA)

HSP 1 Score: 175 bits (443), Expect = 2.130e-55
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    1 MKSETDKLISKHGQLNQSDNMKVVSHVQREEDDWIRHTVMLEGIDVPFIYRRKKQYQSLKGARVNITYYRQVEEVAGIEFETMKVVRIKRS 273
            MKSETDKLISKHGQLNQSDNMKVVSHVQREEDDW+R+TVMLEGIDVPFIYRRKK YQSLKGARVNITYYRQVEEVAGIEFETMKVVRIKRS
Sbjct:    1 MKSETDKLISKHGQLNQSDNMKVVSHVQREEDDWVRNTVMLEGIDVPFIYRRKKLYQSLKGARVNITYYRQVEEVAGIEFETMKVVRIKRS 91
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BLAST of mRNA_L-elsbetiae_contig16696.4514.1 vs. uniprot
Match: A0A7R7GCK3_9ALTE (Uncharacterized protein n=2 Tax=Alteromonas TaxID=226 RepID=A0A7R7GCK3_9ALTE)

HSP 1 Score: 155 bits (393), Expect = 1.050e-47
Identity = 78/93 (83.87%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:    1 MKSETDKLISKHGQLNQSDNMKVVSHVQREE--DDWIRHTVMLEGIDVPFIYRRKKQYQSLKGARVNITYYRQVEEVAGIEFETMKVVRIKRS 273
            MKSE  KL+ KH QLNQ+DN KVVSHVQREE   DWIRHT+MLEGIDVPFIYRRK+QYQSLKGARVN+TYYRQV++VAGIEFETMKVVRIKRS
Sbjct:    4 MKSERQKLVEKHQQLNQTDNAKVVSHVQREEKDSDWIRHTIMLEGIDVPFIYRRKQQYQSLKGARVNVTYYRQVQDVAGIEFETMKVVRIKRS 96
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BLAST of mRNA_L-elsbetiae_contig16696.4514.1 vs. uniprot
Match: A0A075NTH9_9ALTE (Uncharacterized protein n=3 Tax=Alteromonas TaxID=226 RepID=A0A075NTH9_9ALTE)

HSP 1 Score: 154 bits (390), Expect = 2.600e-47
Identity = 71/91 (78.02%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:    1 MKSETDKLISKHGQLNQSDNMKVVSHVQREEDDWIRHTVMLEGIDVPFIYRRKKQYQSLKGARVNITYYRQVEEVAGIEFETMKVVRIKRS 273
            MKSE+DKL++KH QLNQ+DN KV+SHVQRE+ DW+RHT+MLEG++VPF++RRK+QYQ+LKGARVN+TYYR VE+VAGIEFETMKVVRIKRS
Sbjct:    1 MKSESDKLVNKHKQLNQTDNAKVISHVQREDGDWVRHTLMLEGLEVPFVFRRKQQYQNLKGARVNLTYYRHVEDVAGIEFETMKVVRIKRS 91
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BLAST of mRNA_L-elsbetiae_contig16696.4514.1 vs. uniprot
Match: A0A2D7GVS5_ALTSX (Uncharacterized protein n=3 Tax=Alteromonas TaxID=226 RepID=A0A2D7GVS5_ALTSX)

HSP 1 Score: 153 bits (386), Expect = 1.120e-46
Identity = 77/93 (82.80%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:    1 MKSETDKLISKHGQLNQSDNMKVVSHVQREEDD--WIRHTVMLEGIDVPFIYRRKKQYQSLKGARVNITYYRQVEEVAGIEFETMKVVRIKRS 273
            MKSE +KLI+KH QLNQ+DN KVVSHVQREE D  W+RHT+MLEGIDVPFIYRRK++YQSL GARVNITYYR +EEVAGIEFETMKVVRIKRS
Sbjct:    1 MKSEKEKLIAKHSQLNQTDNAKVVSHVQREEKDGEWLRHTIMLEGIDVPFIYRRKQKYQSLVGARVNITYYRHIEEVAGIEFETMKVVRIKRS 93
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BLAST of mRNA_L-elsbetiae_contig16696.4514.1 vs. uniprot
Match: A0A383BAS3_9ZZZZ (Uncharacterized protein (Fragment) n=2 Tax=root TaxID=1 RepID=A0A383BAS3_9ZZZZ)

HSP 1 Score: 152 bits (385), Expect = 1.600e-46
Identity = 75/93 (80.65%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    1 MKSETDKLISKHGQLNQSDNMKVVSHVQREE--DDWIRHTVMLEGIDVPFIYRRKKQYQSLKGARVNITYYRQVEEVAGIEFETMKVVRIKRS 273
            +KSE  KL+ KH QLNQ+DN KV+SHVQREE   DWIRHT+MLEGIDVPFIYRRK+QYQSLKGARVN+TYYR VE++AGIEFETMKVVRIKRS
Sbjct:    1 VKSERQKLVDKHSQLNQTDNAKVISHVQREEKDSDWIRHTIMLEGIDVPFIYRRKQQYQSLKGARVNVTYYRHVEDLAGIEFETMKVVRIKRS 93
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BLAST of mRNA_L-elsbetiae_contig16696.4514.1 vs. uniprot
Match: A0A7X5LIE4_9ALTE (Uncharacterized protein n=1 Tax=Alteromonas profundi TaxID=2696062 RepID=A0A7X5LIE4_9ALTE)

HSP 1 Score: 151 bits (381), Expect = 6.120e-46
Identity = 70/91 (76.92%), Postives = 84/91 (92.31%), Query Frame = 1 
Query:    1 MKSETDKLISKHGQLNQSDNMKVVSHVQREEDDWIRHTVMLEGIDVPFIYRRKKQYQSLKGARVNITYYRQVEEVAGIEFETMKVVRIKRS 273
            MK++++KL+ KHGQLNQSDNMKVVSHVQR+E DW+RHT+MLE + VPF++RRK+ YQSL GARVN+TYYR +EEVAGIEFETMKVVRIKRS
Sbjct:    1 MKTDSEKLVKKHGQLNQSDNMKVVSHVQRDEGDWVRHTLMLENVHVPFVFRRKQGYQSLLGARVNVTYYRHIEEVAGIEFETMKVVRIKRS 91
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BLAST of mRNA_L-elsbetiae_contig16696.4514.1 vs. uniprot
Match: A0A640QFP0_9ALTE (Uncharacterized protein n=35 Tax=Alteromonadaceae TaxID=72275 RepID=A0A640QFP0_9ALTE)

HSP 1 Score: 150 bits (380), Expect = 1.370e-45
Identity = 75/93 (80.65%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    1 MKSETDKLISKHGQLNQSDNMKVVSHVQREE--DDWIRHTVMLEGIDVPFIYRRKKQYQSLKGARVNITYYRQVEEVAGIEFETMKVVRIKRS 273
            +KSE  KL+ KH QLNQ+D +KV+SHVQREE   DWIRHT+MLEGIDVPFIYRRK+QYQSLKGARVN+TYYR VE+VAGIEFETMKVVRIKRS
Sbjct:   14 VKSERQKLVEKHRQLNQTDTVKVMSHVQREEKDSDWIRHTIMLEGIDVPFIYRRKQQYQSLKGARVNVTYYRHVEDVAGIEFETMKVVRIKRS 106
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BLAST of mRNA_L-elsbetiae_contig16696.4514.1 vs. uniprot
Match: A0A1L8MIB9_9ALTE (Uncharacterized protein n=1 Tax=Alteromonas sp. V450 TaxID=1912139 RepID=A0A1L8MIB9_9ALTE)

HSP 1 Score: 149 bits (377), Expect = 2.650e-45
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 MKSETDKLISKHGQLNQSDNMKVVSHVQREEDD--WIRHTVMLEGIDVPFIYRRKKQYQSLKGARVNITYYRQVEEVAGIEFETMKVVRIKRS 273
            MKSE  KL+ KH QLNQ+DN+KVVSHVQREE D  WIRHT+MLE IDVPFIYRRK+QYQSLKGARVN+TYYR +EEVAG+ FETMKVVRIKRS
Sbjct:    1 MKSERQKLVEKHKQLNQTDNVKVVSHVQREEKDGDWIRHTLMLENIDVPFIYRRKQQYQSLKGARVNVTYYRHMEEVAGVAFETMKVVRIKRS 93
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BLAST of mRNA_L-elsbetiae_contig16696.4514.1 vs. uniprot
Match: A0A1Z9X8D2_9ALTE (Uncharacterized protein n=3 Tax=Alteromonas TaxID=226 RepID=A0A1Z9X8D2_9ALTE)

HSP 1 Score: 143 bits (360), Expect = 1.170e-42
Identity = 74/97 (76.29%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 MKSE----TDKLISKHGQLNQSDNMKVVSHVQREEDD--WIRHTVMLEGIDVPFIYRRKKQYQSLKGARVNITYYRQVEEVAGIEFETMKVVRIKRS 273
            MKSE     +KL+ KH +LNQ+DN KVVSHVQREE D  WIRHT+MLEGIDVPFIYRRK  Y+SL GARVN+TYYR VEEVAGIEFETMKVVR+KRS
Sbjct:    1 MKSEREKLVEKLVEKHSKLNQTDNAKVVSHVQREEKDGDWIRHTIMLEGIDVPFIYRRKHNYKSLTGARVNLTYYRHVEEVAGIEFETMKVVRVKRS 97
[Close]
BLAST of mRNA_L-elsbetiae_contig16696.4514.1 vs. uniprot
Match: S5ACG1_9ALTE (Uncharacterized protein n=1 Tax=Alteromonas mediterranea 615 TaxID=1300253 RepID=S5ACG1_9ALTE)

HSP 1 Score: 143 bits (360), Expect = 1.320e-42
Identity = 69/86 (80.23%), Postives = 78/86 (90.70%), Query Frame = 1 
Query:    1 MKSETDKLISKHGQLNQSDNMKVVSHVQREE--DDWIRHTVMLEGIDVPFIYRRKKQYQSLKGARVNITYYRQVEEVAGIEFETMK 252
            MKSE +KL+ KH QLNQ+DN KV+SHVQREE   DW+RHT+MLEGIDVPFIYRRK+QYQSLKGARVN+TYYR VE+VAGIEFETMK
Sbjct:    1 MKSEREKLVEKHKQLNQTDNAKVISHVQREEKDSDWVRHTIMLEGIDVPFIYRRKQQYQSLKGARVNVTYYRHVEDVAGIEFETMK 86
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16696.4514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F5ZEJ2_ALTNA2.130e-5596.70Uncharacterized protein n=7 Tax=Proteobacteria Tax... [more]
A0A7R7GCK3_9ALTE1.050e-4783.87Uncharacterized protein n=2 Tax=Alteromonas TaxID=... [more]
A0A075NTH9_9ALTE2.600e-4778.02Uncharacterized protein n=3 Tax=Alteromonas TaxID=... [more]
A0A2D7GVS5_ALTSX1.120e-4682.80Uncharacterized protein n=3 Tax=Alteromonas TaxID=... [more]
A0A383BAS3_9ZZZZ1.600e-4680.65Uncharacterized protein (Fragment) n=2 Tax=root Ta... [more]
A0A7X5LIE4_9ALTE6.120e-4676.92Uncharacterized protein n=1 Tax=Alteromonas profun... [more]
A0A640QFP0_9ALTE1.370e-4580.65Uncharacterized protein n=35 Tax=Alteromonadaceae ... [more]
A0A1L8MIB9_9ALTE2.650e-4580.65Uncharacterized protein n=1 Tax=Alteromonas sp. V4... [more]
A0A1Z9X8D2_9ALTE1.170e-4276.29Uncharacterized protein n=3 Tax=Alteromonas TaxID=... [more]
S5ACG1_9ALTE1.320e-4280.23Uncharacterized protein n=1 Tax=Alteromonas medite... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16696contigL-elsbetiae_contig16696:2861..3136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score176.4
Seed ortholog evalue6.1e-42
Seed eggNOG ortholog715451.ambt_14760
Hectar predicted targeting categoryother localisation
EggNOG OGs1N1DJ@1224,1S96F@1236,2C7FC@1,32S1T@2,468FD@72275
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size276
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.2635338-CDS-L-elsbetiae_contig16696:2860..31361622815693.2635338-CDS-L-elsbetiae_contig16696:2860..3136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16696 2861..3136 -
1691683041.9985664-CDS-L-elsbetiae_contig16696:2860..31361691683041.9985664-CDS-L-elsbetiae_contig16696:2860..3136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16696 2861..3136 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16696.4514.1prot_L-elsbetiae_contig16696.4514.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16696 2861..3136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16696.4514.1

>prot_L-elsbetiae_contig16696.4514.1 ID=prot_L-elsbetiae_contig16696.4514.1|Name=mRNA_L-elsbetiae_contig16696.4514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MKSETDKLISKHGQLNQSDNMKVVSHVQREEDDWIRHTVMLEGIDVPFIY
RRKKQYQSLKGARVNITYYRQVEEVAGIEFETMKVVRIKRS*
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mRNA from alignment at L-elsbetiae_contig16696:2861..3136-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16696.4514.1 ID=mRNA_L-elsbetiae_contig16696.4514.1|Name=mRNA_L-elsbetiae_contig16696.4514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=276bp|location=Sequence derived from alignment at L-elsbetiae_contig16696:2861..3136- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAATCAGAGACTGACAAATTAATCAGCAAGCATGGCCAGTTAAATCA
GTCTGATAATATGAAGGTGGTGTCTCATGTTCAGCGTGAAGAAGATGACT
GGATACGGCACACGGTAATGCTAGAAGGCATTGATGTCCCGTTTATCTAT
CGACGAAAAAAGCAGTACCAAAGCTTAAAGGGCGCGCGGGTTAATATCAC
TTACTACCGACAGGTAGAGGAGGTGGCGGGCATTGAATTTGAAACCATGA
AAGTGGTACGCATTAAACGAAGCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16696:2861..3136-

>mRNA_L-elsbetiae_contig16696.4514.1 ID=mRNA_L-elsbetiae_contig16696.4514.1|Name=mRNA_L-elsbetiae_contig16696.4514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig16696:2861..3136- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAATCAGAGACTGACAAATTAATCAGCAAGCATGGCCAGTTAAATCA
GTCTGATAATATGAAGGTGGTGTCTCATGTTCAGCGTGAAGAAGATGACT
GGATACGGCACACGGTAATGCTAGAAGGCATTGATGTCCCGTTTATCTAT
CGACGAAAAAAGCAGTACCAAAGCTTAAAGGGCGCGCGGGTTAATATCAC
TTACTACCGACAGGTAGAGGAGGTGGCGGGCATTGAATTTGAAACCATGA
AAGTGGTACGCATTAAACGAAGCTAAATGAAATCAGAGACTGACAAATTA
ATCAGCAAGCATGGCCAGTTAAATCAGTCTGATAATATGAAGGTGGTGTC
TCATGTTCAGCGTGAAGAAGATGACTGGATACGGCACACGGTAATGCTAG
AAGGCATTGATGTCCCGTTTATCTATCGACGAAAAAAGCAGTACCAAAGC
TTAAAGGGCGCGCGGGTTAATATCACTTACTACCGACAGGTAGAGGAGGT
GGCGGGCATTGAATTTGAAACCATGAAAGTGGTACGCATTAAACGAAGCT
AA
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