mRNA_L-elsbetiae_contig16694.4511.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16694.4511.1
Unique NamemRNA_L-elsbetiae_contig16694.4511.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16694.4511.1 vs. uniprot
Match: A0A6V1NAI2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAI2_HETAK)

HSP 1 Score: 178 bits (451), Expect = 6.080e-53
Identity = 78/114 (68.42%), Postives = 96/114 (84.21%), Query Frame = 1
Query:   28 TQAVAYWPYRFITDPDADDTLRVFQRIVESGRHVSIMAHFSHPHELTGPVPQEAIRRIRSTGANVRTQAPLINHVNADPATWASMWRLQVRLGAIPYYMFVERDTGARKYFEVS 369
            T+++AYWPYR++TDPD+DD LRVF+ +V SGRH+SIMAHFSHP EL+ P  +EAIRRIR+TGA +RTQAP+INHVNAD   WA  WR++ RLG +PYYMF  RDTGAR YF+VS
Sbjct:   90 TKSLAYWPYRYLTDPDSDDLLRVFESVVASGRHLSIMAHFSHPAELSTPAVREAIRRIRATGAQIRTQAPIINHVNADAKIWADKWRMETRLGLVPYYMFQARDTGARDYFKVS 203          
BLAST of mRNA_L-elsbetiae_contig16694.4511.1 vs. uniprot
Match: A0A6V1NMA6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NMA6_HETAK)

HSP 1 Score: 178 bits (451), Expect = 8.490e-51
Identity = 78/114 (68.42%), Postives = 96/114 (84.21%), Query Frame = 1
Query:   28 TQAVAYWPYRFITDPDADDTLRVFQRIVESGRHVSIMAHFSHPHELTGPVPQEAIRRIRSTGANVRTQAPLINHVNADPATWASMWRLQVRLGAIPYYMFVERDTGARKYFEVS 369
            T+++AYWPYR++TDPD+DD LRVF+ +V SGRH+SIMAHFSHP EL+ P  +EAIRRIR+TGA +RTQAP+INHVNAD   WA  WR++ RLG +PYYMF  RDTGAR YF+VS
Sbjct:  325 TKSLAYWPYRYLTDPDSDDLLRVFESVVASGRHLSIMAHFSHPAELSTPAVREAIRRIRATGAQIRTQAPIINHVNADAKIWADKWRMETRLGLVPYYMFQARDTGARDYFKVS 438          
BLAST of mRNA_L-elsbetiae_contig16694.4511.1 vs. uniprot
Match: A0A0M8K8P6_9CHLR (Lysine 2,3-aminomutase n=1 Tax=Ardenticatena maritima TaxID=872965 RepID=A0A0M8K8P6_9CHLR)

HSP 1 Score: 176 bits (445), Expect = 9.420e-51
Identity = 78/113 (69.03%), Postives = 94/113 (83.19%), Query Frame = 1
Query:   28 TQAVAYWPYRFITDPDADDTLRVFQRIVESGRHVSIMAHFSHPHELTGPVPQEAIRRIRSTGANVRTQAPLINHVNADPATWASMWRLQVRLGAIPYYMFVERDTGARKYFEV 366
            T+++AYWPYR+++D DADD LR+F+ I+ SGRHV+ MAHFSHP EL+ P+ QEAI RIR+TGA +RTQAPLI HVN DP  WA+MWR  VRLG IPYYMFVERDTG + YFEV
Sbjct:  230 TKSLAYWPYRYVSDADADDILRLFEEIIASGRHVAFMAHFSHPRELSTPIVQEAIARIRNTGAEIRTQAPLIRHVNDDPDVWATMWRESVRLGMIPYYMFVERDTGPKGYFEV 342          
BLAST of mRNA_L-elsbetiae_contig16694.4511.1 vs. uniprot
Match: A0A6P5ABN5_BRABE (uncharacterized protein LOC109484727 n=5 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5ABN5_BRABE)

HSP 1 Score: 177 bits (448), Expect = 9.900e-51
Identity = 79/120 (65.83%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    7 ISRARAITQAVAYWPYRFITDPDADDTLRVFQRIVESGRHVSIMAHFSHPHELTGPVPQEAIRRIRSTGANVRTQAPLINHVNADPATWASMWRLQVRLGAIPYYMFVERDTGARKYFEV 366
            +S  R  T+++AYWPYR++TD D+DD LR+F+ +V+SGR ++IMAHF+HP EL+ P  QEAIRR+R TGA +R QAPL+NHVNADPATWA + R + RLG IPYYMFVERDTGAR YFEV
Sbjct:  266 LSTVRIGTKSLAYWPYRYVTDTDSDDLLRIFEEVVKSGRQLAIMAHFTHPRELSTPTVQEAIRRLRMTGAVIRAQAPLVNHVNADPATWARLVRTETRLGVIPYYMFVERDTGARHYFEV 385          
BLAST of mRNA_L-elsbetiae_contig16694.4511.1 vs. uniprot
Match: A0A4P2Q137_SORCE (Lysine 2,3-aminomutase n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A4P2Q137_SORCE)

HSP 1 Score: 175 bits (444), Expect = 1.520e-50
Identity = 79/113 (69.91%), Postives = 93/113 (82.30%), Query Frame = 1
Query:   28 TQAVAYWPYRFITDPDADDTLRVFQRIVESGRHVSIMAHFSHPHELTGPVPQEAIRRIRSTGANVRTQAPLINHVNADPATWASMWRLQVRLGAIPYYMFVERDTGARKYFEV 366
            T+A AYWP+RF+TD DADD LR+F+ I  +G H+++MAHFSHP EL  P+ +EA+RRIRSTGA VR QAPLI HVN DP  WA+MW  QVRLGA+PYYMFVERDTGAR YFEV
Sbjct:  225 TKAPAYWPHRFVTDADADDLLRLFEEIRAAGMHIALMAHFSHPRELEPPIAEEAVRRIRSTGAVVRCQAPLIRHVNDDPTAWATMWAAQVRLGAVPYYMFVERDTGARGYFEV 337          
BLAST of mRNA_L-elsbetiae_contig16694.4511.1 vs. uniprot
Match: A0A832DSZ2_9BACT (Lysine 2,3-aminomutase (Fragment) n=1 Tax=Calditrichia bacterium TaxID=2268178 RepID=A0A832DSZ2_9BACT)

HSP 1 Score: 172 bits (437), Expect = 2.300e-50
Identity = 74/121 (61.16%), Postives = 99/121 (81.82%), Query Frame = 1
Query:    7 ISRARAITQAVAYWPYRFITDPDADDTLRVFQRIVESGRHVSIMAHFSHPHELTGPVPQEAIRRIRSTGANVRTQAPLINHVNADPATWASMWRLQVRLGAIPYYMFVERDTGARKYFEVS 369
            +   R  ++A+AYWPYRF++DPDADD LR+F+R+V+ G+H+++MAHFSHP EL  P  QEAIRRIR+TGA +RTQ+P++N++NAD + WA MWR QV LG IPYYMFV RDTGA+ YF ++
Sbjct:  221 VQNIRIGSKALAYWPYRFLSDPDADDLLRLFERVVQKGKHLALMAHFSHPVELETPAVQEAIRRIRATGAEIRTQSPILNNINADASVWAQMWRKQVNLGMIPYYMFVVRDTGAQHYFGIT 341          
BLAST of mRNA_L-elsbetiae_contig16694.4511.1 vs. uniprot
Match: A0A1S3J7I0_LINUN (uncharacterized protein LOC106170480 isoform X2 n=5 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3J7I0_LINUN)

HSP 1 Score: 176 bits (446), Expect = 3.950e-50
Identity = 78/120 (65.00%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    7 ISRARAITQAVAYWPYRFITDPDADDTLRVFQRIVESGRHVSIMAHFSHPHELTGPVPQEAIRRIRSTGANVRTQAPLINHVNADPATWASMWRLQVRLGAIPYYMFVERDTGARKYFEV 366
            ++  R  T+++ YWPYR+I+D D+DD L + +R+V+SG+H++IM+HFSHP EL+ PV QEAIRRI+ TGA +R QAPLI HVN +P TWA MWRLQVRLG IPYYMFVERDTGA+ YFEV
Sbjct:  313 VATVRIGTKSIGYWPYRYISDSDSDDILWLLERVVKSGKHLAIMSHFSHPRELSTPVAQEAIRRIQMTGATIRAQAPLIRHVNDNPQTWADMWRLQVRLGIIPYYMFVERDTGAKHYFEV 432          
BLAST of mRNA_L-elsbetiae_contig16694.4511.1 vs. uniprot
Match: A0A3N1Y691_9GAMM (L-lysine 2,3-aminomutase n=1 Tax=Inmirania thermothiophila TaxID=1750597 RepID=A0A3N1Y691_9GAMM)

HSP 1 Score: 173 bits (439), Expect = 7.270e-50
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1
Query:    1 ASISRARAITQAVAYWPYRFITDPDADDTLRVFQRIVESGRHVSIMAHFSHPHELTGPVPQEAIRRIRSTGANVRTQAPLINHVNADPATWASMWRLQVRLGAIPYYMFVERDTGARKYFEV 366
            A ++  R  T+A+++WP+RF+TDPDAD  LR+F+RIV +GRH+++MAH +HP EL     +EAI RIR+TGA +RTQAPL+ H+N DPA WA MWR QVRLG IPYYMFVERDTGAR+YFE+
Sbjct:  230 AHVTDIRIGTKALSFWPFRFLTDPDADALLRLFERIVAAGRHLAVMAHVNHPQELESEAAREAIARIRATGAEIRTQAPLLRHINDDPAVWARMWREQVRLGMIPYYMFVERDTGARRYFEL 351          
BLAST of mRNA_L-elsbetiae_contig16694.4511.1 vs. uniprot
Match: A0A3M1DKH1_9GAMM (Lysine 2,3-aminomutase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1DKH1_9GAMM)

HSP 1 Score: 172 bits (435), Expect = 8.140e-50
Identity = 75/113 (66.37%), Postives = 95/113 (84.07%), Query Frame = 1
Query:   28 TQAVAYWPYRFITDPDADDTLRVFQRIVESGRHVSIMAHFSHPHELTGPVPQEAIRRIRSTGANVRTQAPLINHVNADPATWASMWRLQVRLGAIPYYMFVERDTGARKYFEV 366
            T+++++WPYR++TDPDAD+ LR+F+R+VESGRH+S+MAH +H  EL  P+ +EAIRRIR TGA +RTQAPL+ HVN DP  W  +WR QVRLG +PYYMFVERDTGAR YFEV
Sbjct:  193 TKSLSFWPYRYVTDPDADELLRLFERVVESGRHLSLMAHVNHWRELETPIAREAIRRIRDTGAVIRTQAPLLAHVNDDPHVWNRLWRTQVRLGMVPYYMFVERDTGARHYFEV 305          
BLAST of mRNA_L-elsbetiae_contig16694.4511.1 vs. uniprot
Match: UPI000379EB40 (lysine 2,3-aminomutase n=2 Tax=unclassified Thioalkalivibrio TaxID=2621013 RepID=UPI000379EB40)

HSP 1 Score: 173 bits (438), Expect = 1.020e-49
Identity = 72/122 (59.02%), Postives = 96/122 (78.69%), Query Frame = 1
Query:    1 ASISRARAITQAVAYWPYRFITDPDADDTLRVFQRIVESGRHVSIMAHFSHPHELTGPVPQEAIRRIRSTGANVRTQAPLINHVNADPATWASMWRLQVRLGAIPYYMFVERDTGARKYFEV 366
            A +   R  T+A+ +WPYRF+TD DAD+ L + +R+ E+G+HV++MAH++HPHEL  P+ +EAIRR+R TGA +R Q PL+ H+N DP  WA +WR +VRLG IPYYMFVERDTGAR+YFEV
Sbjct:  231 AHVQTVRIGTKALTFWPYRFVTDSDADELLHLLERLAEAGKHVALMAHYNHPHELRTPIAREAIRRVRDTGAEIRAQGPLLRHINDDPGAWADLWREEVRLGIIPYYMFVERDTGARRYFEV 352          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16694.4511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1NAI2_HETAK6.080e-5368.42Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1NMA6_HETAK8.490e-5168.42Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0M8K8P6_9CHLR9.420e-5169.03Lysine 2,3-aminomutase n=1 Tax=Ardenticatena marit... [more]
A0A6P5ABN5_BRABE9.900e-5165.83uncharacterized protein LOC109484727 n=5 Tax=Branc... [more]
A0A4P2Q137_SORCE1.520e-5069.91Lysine 2,3-aminomutase n=1 Tax=Sorangium cellulosu... [more]
A0A832DSZ2_9BACT2.300e-5061.16Lysine 2,3-aminomutase (Fragment) n=1 Tax=Calditri... [more]
A0A1S3J7I0_LINUN3.950e-5065.00uncharacterized protein LOC106170480 isoform X2 n=... [more]
A0A3N1Y691_9GAMM7.270e-5063.11L-lysine 2,3-aminomutase n=1 Tax=Inmirania thermot... [more]
A0A3M1DKH1_9GAMM8.140e-5066.37Lysine 2,3-aminomutase n=1 Tax=Gammaproteobacteria... [more]
UPI000379EB401.020e-4959.02lysine 2,3-aminomutase n=2 Tax=unclassified Thioal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16694contigL-elsbetiae_contig16694:2202..3401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score179.5
Seed ortholog evalue9.8e-43
Seed eggNOG ortholog7739.XP_002609422.1
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.lysine 2,3-aminomutase activity
EggNOG OGs2S4VX@2759,38HTV@33154,3BT46@33208,3DA03@33213,COG1509@1
COG Functional cat.E
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons2
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.120622-CDS-L-elsbetiae_contig16694:2201..23931622815693.120622-CDS-L-elsbetiae_contig16694:2201..2393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16694 2202..2393 -
1691683041.9380171-CDS-L-elsbetiae_contig16694:2201..23931691683041.9380171-CDS-L-elsbetiae_contig16694:2201..2393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16694 2202..2393 -
1622815693.1328962-CDS-L-elsbetiae_contig16694:3218..34011622815693.1328962-CDS-L-elsbetiae_contig16694:3218..3401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16694 3219..3401 -
1691683041.9480877-CDS-L-elsbetiae_contig16694:3218..34011691683041.9480877-CDS-L-elsbetiae_contig16694:3218..3401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16694 3219..3401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16694.4511.1prot_L-elsbetiae_contig16694.4511.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16694 2202..3401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16694.4511.1

>prot_L-elsbetiae_contig16694.4511.1 ID=prot_L-elsbetiae_contig16694.4511.1|Name=mRNA_L-elsbetiae_contig16694.4511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
ASISRARAITQAVAYWPYRFITDPDADDTLRVFQRIVESGRHVSIMAHFS
HPHELTGPVPQEAIRRIRSTGANVRTQAPLINHVNADPATWASMWRLQVR
LGAIPYYMFVERDTGARKYFEVSY*
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mRNA from alignment at L-elsbetiae_contig16694:2202..3401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16694.4511.1 ID=mRNA_L-elsbetiae_contig16694.4511.1|Name=mRNA_L-elsbetiae_contig16694.4511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1200bp|location=Sequence derived from alignment at L-elsbetiae_contig16694:2202..3401- (Laminarionema elsbetiae ELsaHSoW15)
GCTTCTATCTCCCGCGCTCGCGCGATAACACAGGCGGTGGCCTACTGGCC CTACCGATTCATCACCGACCCGGATGCGGACGACACGCTGCGCGTCTTCC AGCGCATCGTGGAGAGCGGGCGGCACGTGTCCATCATGGCTCACTTCTCG CACCCGCACGAGCTCACTGGGCCGGTCCCTCAGGTATGTATGTATGTATG TTGTTGTCGTGGACGGTGTGCTCGACGACACGCATGAGAGCACAGAGGCA GATCCCATGCGTGGGTATTTATCTACTTCGACGTATGGTCTCAAGGGAGA ATGCCTCCTTCGTATGCACGTAAAAAGACGGATCCCATGCGTGGGTATTC ATCTACTTCGACGTATGGCCTCAAGAGAGAATGCCTCACTCGTATGCACG TAAAAAGACAGATCCCATGCGTGGGTATTTATCTACTTCGAAGTATGCTC TCCAGAGAGAATGCCTGCTTCGTATGCACACGTATGTAGACCAATGGCCT ATGTAGAAGCCAAGTCGAGGGATGTGCATGCACGACAAAAGGAGTTACGA GCCGAGGTTGGTTGCTGCTGCTCAGAGGCAAGAGCTGCGAAATCCGCAGG GGGGGGGGGGCGAAGCATGCGTTGGCGTGTATATATTTGTGAAGAAAAAA CATGCCGAGGAGGAAAATATTGGCAAGAGATTCAGTAGCCTTCGCGGAGT TTGTCTTTAATGTAACATACATACGAGATAGATAAAGTATAGGAATCGGG AAGGGGGGATACCTTCCGGGGTTTGGGGTTAGGAATACGGAGCCCCTGTC TTTCTTGGCGAAGGCGGTTTGGGAGAGTGCCGTACAGATCATATCTATAT ATAACCCTAACCTAGGGGATAAGGGATGAGTGGCGAGATCGCTCTCCTGA ACGCATCAACGCGGCAAACCCCGGCAGCTCTCAACAGTGTCCGTCTCGTC GCCCGCCGCCGCCGCCGCCCGCGCGAACCGACTCGCCGATCATCATGCGT CGTCGCAGGAGGCCATTCGGAGAATCAGGTCGACCGGCGCGAACGTCAGG ACCCAGGCGCCGCTCATCAACCACGTCAACGCCGACCCGGCCACCTGGGC GAGCATGTGGCGGCTGCAGGTCAGGCTCGGCGCCATCCCGTACTACATGT TCGTGGAGAGGGACACCGGCGCGCGGAAGTACTTCGAGGTGAGTTATTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16694:2202..3401-

>mRNA_L-elsbetiae_contig16694.4511.1 ID=mRNA_L-elsbetiae_contig16694.4511.1|Name=mRNA_L-elsbetiae_contig16694.4511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig16694:2202..3401- (Laminarionema elsbetiae ELsaHSoW15)
GCTTCTATCTCCCGCGCTCGCGCGATAACACAGGCGGTGGCCTACTGGCC
CTACCGATTCATCACCGACCCGGATGCGGACGACACGCTGCGCGTCTTCC
AGCGCATCGTGGAGAGCGGGCGGCACGTGTCCATCATGGCTCACTTCTCG
CACCCGCACGAGCTCACTGGGCCGGTCCCTCAGGCTTCTATCTCCCGCGC
TCGCGCGATAACACAGGCGGTGGCCTACTGGCCCTACCGATTCATCACCG
ACCCGGATGCGGACGACACGCTGCGCGTCTTCCAGCGCATCGTGGAGAGC
GGGCGGCACGTGTCCATCATGGCTCACTTCTCGCACCCGCACGAGCTCAC
TGGGCCGGTCCCTCAGGAGGCCATTCGGAGAATCAGGTCGACCGGCGCGA
ACGTCAGGACCCAGGCGCCGCTCATCAACCACGTCAACGCCGACCCGGCC
ACCTGGGCGAGCATGTGGCGGCTGCAGGTCAGGCTCGGCGCCATCCCGTA
CTACATGTTCGTGGAGAGGGACACCGGCGCGCGGAAGTACTTCGAGGTGA
GTTATTAAGAGGCCATTCGGAGAATCAGGTCGACCGGCGCGAACGTCAGG
ACCCAGGCGCCGCTCATCAACCACGTCAACGCCGACCCGGCCACCTGGGC
GAGCATGTGGCGGCTGCAGGTCAGGCTCGGCGCCATCCCGTACTACATGT
TCGTGGAGAGGGACACCGGCGCGCGGAAGTACTTCGAGGTGAGTTATTAA
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