mRNA_L-elsbetiae_contig1669.4510.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1669.4510.1
Unique NamemRNA_L-elsbetiae_contig1669.4510.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1669.4510.1 vs. uniprot
Match: A0A6H5KPL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL9_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.920e-14
Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 2 
Query:  434 VMAEVHRRCTGHKEHLAESALALCALAPNKAVVVSLWQFYLDTLLENAGGVLGSKNAAEFTFTRLKAHGSRLRLFLNDDSNREVALDIAG-ELRFERDLSGVYNLIQQVTLAYLTEALGDVSRARVVYPTQVVDLDKDRRQVLFYIAGWMLSSALTRVS 907
            V  +V + C+ H E +   A  L       A ++S W F +  L ++ G    S+  A F+  R       ++ FL DD     A+ +   E    R L  V+NL+ + T  +L + +  V+  RV YPT   +LD+DRR+V+++++GW+LSSAL+ V+
Sbjct:   40 VDTKVLKECSEHAEFVMPLAQKLSDTNCLGATILSWWDFLVGLLRDSVGKAPDSRRVAAFSSQRRLVRPRMMQEFLRDDRTYATAVTLVEHEDEAVRRLGIVFNLVDKATWQFLADEITKVNILRVEYPTTRYELDQDRREVVYFLSGWLLSSALSHVT 198
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BLAST of mRNA_L-elsbetiae_contig1669.4510.1 vs. uniprot
Match: A0A6H5KLR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR4_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.120e-9
Identity = 49/177 (27.68%), Postives = 82/177 (46.33%), Query Frame = 2 
Query:  386 EGIVQQLPDATEVVVPVMAEVHRRCTGHKEHLAESALALCALAPNKAVVVSLWQFYLDTLLENAGGVLGSKNAAEFTFTRLKAHGSRLRLFLNDDSNREVALDIAGELR-FERDLSGVYNLIQQVTLAYLTEALGDVSRARVVYPTQVVDLDKDRRQVLFYIAGWMLSSALTRVSRD 913
            E +V+QLP    ++  V   +     G         + L  +   K  ++  W   +  L+EN+     SK A  +   R +    +   F ++ S    AL++  + R     L+ V+  I +V    LT+        +V YP + VDLD  +R++++ IAGW+LSSAL+RVSR 
Sbjct:   13 EIVVKQLPTGARLIDWVGERLRVHWMGQVPEYKHIVVGLLDVQEVKDAILGWWGVLVGALVENSKKPPSSKRALAYEKKREEERFPKQEEFSSEPSIVRKALELGVDSRRVAHKLTCVFGAIDEVADKTLTQQTDAAHLVKVAYPAEDVDLDVHQRRLVYNIAGWLLSSALSRVSRQ 189
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BLAST of mRNA_L-elsbetiae_contig1669.4510.1 vs. uniprot
Match: A0A6H5JWF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF8_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.520e-8
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 2 
Query:  656 FLNDDSNREVALDIAG-ELRFERDLSGVYNLIQQVTLAYLTEALGDVSRARVVYPTQVVDLDKDRRQVLFYIAGWMLSSALTRVSR 910
            FL DD     A+ +   E    R L  V+NL+ + T  +L + +  V+  RV YPT   DL +DRR+V+++++GW+LSSAL+ V+R
Sbjct:    5 FLRDDRTYATAVTLVEHEDEAVRRLGIVFNLVDKATWQFLADEITKVNILRVEYPTTRYDLAQDRREVVYFLSGWLLSSALSHVTR 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1669.4510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KPL9_9PHAE1.920e-1431.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLR4_9PHAE1.120e-927.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWF8_9PHAE5.520e-839.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1669contigL-elsbetiae_contig1669:19646..21364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size918
Cds size894
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1669.4510.1prot_L-elsbetiae_contig1669.4510.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1669 19668..21364 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.0226474-UTR-L-elsbetiae_contig1669:19645..196671622815693.0226474-UTR-L-elsbetiae_contig1669:19645..19667Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1669 19646..19667 +
1691683041.882023-UTR-L-elsbetiae_contig1669:19645..196671691683041.882023-UTR-L-elsbetiae_contig1669:19645..19667Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1669 19646..19667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.0345638-CDS-L-elsbetiae_contig1669:19667..196911622815693.0345638-CDS-L-elsbetiae_contig1669:19667..19691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1669 19668..19691 +
1691683041.890635-CDS-L-elsbetiae_contig1669:19667..196911691683041.890635-CDS-L-elsbetiae_contig1669:19667..19691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1669 19668..19691 +
1622815693.0456765-CDS-L-elsbetiae_contig1669:19878..200531622815693.0456765-CDS-L-elsbetiae_contig1669:19878..20053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1669 19879..20053 +
1691683041.899226-CDS-L-elsbetiae_contig1669:19878..200531691683041.899226-CDS-L-elsbetiae_contig1669:19878..20053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1669 19879..20053 +
1622815693.061411-CDS-L-elsbetiae_contig1669:20245..203911622815693.061411-CDS-L-elsbetiae_contig1669:20245..20391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1669 20246..20391 +
1691683041.9083657-CDS-L-elsbetiae_contig1669:20245..203911691683041.9083657-CDS-L-elsbetiae_contig1669:20245..20391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1669 20246..20391 +
1622815693.0755386-CDS-L-elsbetiae_contig1669:20548..209351622815693.0755386-CDS-L-elsbetiae_contig1669:20548..20935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1669 20549..20935 +
1691683041.91904-CDS-L-elsbetiae_contig1669:20548..209351691683041.91904-CDS-L-elsbetiae_contig1669:20548..20935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1669 20549..20935 +
1622815693.0870314-CDS-L-elsbetiae_contig1669:21202..213641622815693.0870314-CDS-L-elsbetiae_contig1669:21202..21364Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1669 21203..21364 +
1691683041.9289641-CDS-L-elsbetiae_contig1669:21202..213641691683041.9289641-CDS-L-elsbetiae_contig1669:21202..21364Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1669 21203..21364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1669.4510.1

>prot_L-elsbetiae_contig1669.4510.1 ID=prot_L-elsbetiae_contig1669.4510.1|Name=mRNA_L-elsbetiae_contig1669.4510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=298bp
MKNLAMEDPIQAHGDDVGVDRDLPGAERHGNVVSSAVQRAMDAWSAGGDE
DAGDDDERDDSDDERPGLKVTETVLHDRDDDEEDEAEFSSHLVGMQDRQT
AKSGKKKVPATLQQSVRKDTLEGIVQQLPDATEVVVPVMAEVHRRCTGHK
EHLAESALALCALAPNKAVVVSLWQFYLDTLLENAGGVLGSKNAAEFTFT
RLKAHGSRLRLFLNDDSNREVALDIAGELRFERDLSGVYNLIQQVTLAYL
TEALGDVSRARVVYPTQVVDLDKDRRQVLFYIAGWMLSSALTRVSRDD
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mRNA from alignment at L-elsbetiae_contig1669:19646..21364+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1669.4510.1 ID=mRNA_L-elsbetiae_contig1669.4510.1|Name=mRNA_L-elsbetiae_contig1669.4510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1719bp|location=Sequence derived from alignment at L-elsbetiae_contig1669:19646..21364+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTCCCGGTAGGGTTCCTACCATGAAGAACCTGGCCATGGAAGATGTGA
GTCGTACTTATAGGACACACGGCCGCTCTGGTATGCTGATGTTGTGAGGC
AAAGGGCAAGCGAGAGAGAAGTATGGTAATCATCACCCGCGAAGTACGCA
CGTTCATCTTGCAAAATACCATCACTTCTTGCCGTCCCGCTGACCATATG
TACTCTTTCTCGTTCGCCGTTACTCCTTCGCAGCCAATTCAGGCGCATGG
AGACGACGTTGGTGTTGATCGAGATCTGCCCGGAGCGGAGCGGCACGGCA
ATGTCGTGTCGAGCGCCGTACAGCGTGCCATGGATGCCTGGAGCGCGGGG
GGGGATGAGGATGCCGGCGATGACGATGAACGAGACGACTCAGACGATGA
GCGACCGGGTGATTCAACCTCGATACTGTTAAGTTTGCATACCCCAGACT
GTTTTCACCATAAGCACTGTGGTAGGAGGAAAACGCGACGAGACATGACG
CACTTCCCAAACTATGGCGATAAGGAAATGGACAAAGCTGGTGTTTTTTT
TTACGGTGTGTGTTGGCCCTCTCCTCTTTTGACGTTGCCTCTTTTTGAAG
GACTCAAGGTGACGGAGACAGTTCTCCATGACAGGGACGACGATGAAGAA
GATGAGGCTGAGTTTTCAAGTCATCTCGTCGGTATGCAGGACAGACAGAC
CGCGAAAAGTGGCAAGAAGAAAGTACCTGCGACCCTTCAGCAGTCGGTGA
GCTGGTTCTACTTTTTTTTTTGCCTAGACATGGAAGTGGCCCGTTTAAAA
TGTGTGTGGTTGAAAACTTGAGCAATTTCGTGGGGCTTGACGCATTGCTT
TGTCCCGACATTACATGACCGGAGGTTGTTCCACGCGCCTTTGGTTTGCC
CAGGTTCGAAAGGATACCTTGGAAGGTATTGTTCAACAACTTCCGGATGC
TACTGAGGTCGTAGTACCGGTGATGGCAGAAGTGCACAGGCGATGCACAG
GGCACAAGGAACATCTGGCGGAGTCCGCACTTGCGTTGTGCGCCTTAGCC
CCGAACAAAGCTGTCGTTGTCAGCCTCTGGCAGTTTTACTTGGACACATT
GTTGGAGAACGCAGGGGGGGTGTTGGGTTCCAAGAACGCTGCGGAGTTTA
CCTTTACGCGGCTGAAAGCCCATGGATCTCGCCTTCGTTTATTTCTCAAC
GATGATAGCAACAGAGAAGTGGCTCTGGACATCGCTGGCGAGTTGCGCTT
CGAGAGGGACCTTTCTGGCGTTTACAACCTCATCCAACAGGTGAGCAGGA
CCAACGGGTTGGCGGATGTATGTAGGAAGGGCTTGCGGCATGGCCTTTTC
AGTCCTATTGCCGATTGGCACGAGGGCGTGTTGTTTCTTATTTCTAGCAG
TAAAGACATTTTTATGAGAACGTGAACAACACACGGTTGTGTCTCTTATC
TGCGTTGTCGTTTATGAGAGGGATAGGAGGTCGCTATGAGGGTGAATGTG
CTTTGTGTTAACCTCGGCTGTTGTTCAATCGGGGCGCCCTATTTTCTTAT
CACGTAGGTTACCCTCGCGTACCTGACGGAAGCGTTGGGAGACGTGAGCC
GTGCTAGAGTGGTGTACCCAACCCAGGTGGTTGACCTCGACAAGGATCGG
CGACAAGTTCTCTTCTACATCGCCGGCTGGATGCTGAGTAGCGCACTTAC
CCGTGTATCCAGAGACGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1669:19646..21364+

>mRNA_L-elsbetiae_contig1669.4510.1 ID=mRNA_L-elsbetiae_contig1669.4510.1|Name=mRNA_L-elsbetiae_contig1669.4510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1788bp|location=Sequence derived from alignment at L-elsbetiae_contig1669:19646..21364+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAACCTGGCCATGGAAGATATGAAGAACCTGGCCATGGAAGATCC
AATTCAGGCGCATGGAGACGACGTTGGTGTTGATCGAGATCTGCCCGGAG
CGGAGCGGCACGGCAATGTCGTGTCGAGCGCCGTACAGCGTGCCATGGAT
GCCTGGAGCGCGGGGGGGGATGAGGATGCCGGCGATGACGATGAACGAGA
CGACTCAGACGATGAGCGACCGGCCAATTCAGGCGCATGGAGACGACGTT
GGTGTTGATCGAGATCTGCCCGGAGCGGAGCGGCACGGCAATGTCGTGTC
GAGCGCCGTACAGCGTGCCATGGATGCCTGGAGCGCGGGGGGGGATGAGG
ATGCCGGCGATGACGATGAACGAGACGACTCAGACGATGAGCGACCGGGA
CTCAAGGTGACGGAGACAGTTCTCCATGACAGGGACGACGATGAAGAAGA
TGAGGCTGAGTTTTCAAGTCATCTCGTCGGTATGCAGGACAGACAGACCG
CGAAAAGTGGCAAGAAGAAAGTACCTGCGACCCTTCAGCAGTCGGACTCA
AGGTGACGGAGACAGTTCTCCATGACAGGGACGACGATGAAGAAGATGAG
GCTGAGTTTTCAAGTCATCTCGTCGGTATGCAGGACAGACAGACCGCGAA
AAGTGGCAAGAAGAAAGTACCTGCGACCCTTCAGCAGTCGGTTCGAAAGG
ATACCTTGGAAGGTATTGTTCAACAACTTCCGGATGCTACTGAGGTCGTA
GTACCGGTGATGGCAGAAGTGCACAGGCGATGCACAGGGCACAAGGAACA
TCTGGCGGAGTCCGCACTTGCGTTGTGCGCCTTAGCCCCGAACAAAGCTG
TCGTTGTCAGCCTCTGGCAGTTTTACTTGGACACATTGTTGGAGAACGCA
GGGGGGGTGTTGGGTTCCAAGAACGCTGCGGAGTTTACCTTTACGCGGCT
GAAAGCCCATGGATCTCGCCTTCGTTTATTTCTCAACGATGATAGCAACA
GAGAAGTGGCTCTGGACATCGCTGGCGAGTTGCGCTTCGAGAGGGACCTT
TCTGGCGTTTACAACCTCATCCAACAGGTTCGAAAGGATACCTTGGAAGG
TATTGTTCAACAACTTCCGGATGCTACTGAGGTCGTAGTACCGGTGATGG
CAGAAGTGCACAGGCGATGCACAGGGCACAAGGAACATCTGGCGGAGTCC
GCACTTGCGTTGTGCGCCTTAGCCCCGAACAAAGCTGTCGTTGTCAGCCT
CTGGCAGTTTTACTTGGACACATTGTTGGAGAACGCAGGGGGGGTGTTGG
GTTCCAAGAACGCTGCGGAGTTTACCTTTACGCGGCTGAAAGCCCATGGA
TCTCGCCTTCGTTTATTTCTCAACGATGATAGCAACAGAGAAGTGGCTCT
GGACATCGCTGGCGAGTTGCGCTTCGAGAGGGACCTTTCTGGCGTTTACA
ACCTCATCCAACAGGTTACCCTCGCGTACCTGACGGAAGCGTTGGGAGAC
GTGAGCCGTGCTAGAGTGGTGTACCCAACCCAGGTGGTTGACCTCGACAA
GGATCGGCGACAAGTTCTCTTCTACATCGCCGGCTGGATGCTGAGTAGCG
CACTTACCCGTGTATCCAGAGACGATGTTACCCTCGCGTACCTGACGGAA
GCGTTGGGAGACGTGAGCCGTGCTAGAGTGGTGTACCCAACCCAGGTGGT
TGACCTCGACAAGGATCGGCGACAAGTTCTCTTCTACATCGCCGGCTGGA
TGCTGAGTAGCGCACTTACCCGTGTATCCAGAGACGAT
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