mRNA_L-elsbetiae_contig1669.4509.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1669.4509.1 vs. uniprot
Match: D8LL70_ECTSI (DUF4524 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL70_ECTSI) HSP 1 Score: 457 bits (1176), Expect = 2.970e-145 Identity = 366/782 (46.80%), Postives = 418/782 (53.45%), Query Frame = 1
Query: 85 MVNPSRALLFENGAALGVFHAEGDGNRCRGG----RSVVVMEPSGASFTHVRQDGGCHRQLSEFCRRALIPQVAAVTRFRNAHSPRPYVSERLMSTPSTRRQESDGKRGR---------APSRLAQWPAGGAVAATAGGDVEGAPRYCTTRAADGTVEVRAVGGNARLTLSASRTLAEVDYAVAIPSGSGGLAS-RVWITRQFLVGSRSS----DVPSEFSHALAAALR----AXXXXXXXXXXXAGWGGEGDDVVVDEGFVGASATGXXXXXXXXAGEGEFFVASELPRPQSRLNHPSWDTVHVSPGFDNELHLELAAPLGYGGVHPARRAFTCHGXXXXXXXXXXXXXXXXXXAGC-LLSVDVMKLAAEDGRGFAGGLAAVVETAGGCTYRVVFGGGXXXXXXXXXXXXMRDNVNVHVAVHADGTEVWLEGDFVRL---PAGSTVAXXXXXXXXXXXXXXXXXSPGGWTSMSLGDIACRALALRRQFVALPETEAAAAAALHSLLPFGVPRPVRDAKPSSAPTTRRPQALS-------PVVA----AAAGRTPTRGARAAXXXXXXXXXXXXXXXXTPAGT-TVVESVDRGGASFVAFADGRARGAFADRTIVTLGAPFSYPPLPPPQRRHQGAGGAGHGRVAAPFGATPPLGGGDRGPEVED----------REIECIRPDGTAVRLTERSLDPRRCLSAAAAHDNSLLPG----GALRPYVVAVLRFAGWAATPPAERQAAAENGAAGRTAAAAEAERNRRFVELQRLVKLASKPPPP 2274
M P R LLFENGAAL VF +GD + + G S VV+EPSGA F VRQDG CHRQLS+FCRR LIP VAAV+ FRNAHSPRPY+S+R+ +T S+G PSR+A WPA A T + R ADG+VEVRA GGNARL LSAS T+AEVDYAVA+P G G RVW+TR+FLVG ++ DVP EFSHAL+ A+R AXXXXXXXXXXX V G V +A GE VA ELPRP+ R +H SWDTV P D+ H + APLGY G RR C G AG LLSVDVMKLA G+G+AG LAAVVE+ G CTYR+V GGG V VHV VHADG+EVWLEGDFVRL PA + V + GGWTSMSLG+IA RA+ALR+QF+ AAAAAA G P+ +PS + P ALS PV A AAA R + AG+ +VVESV+RGGASFVAFADGRARG FADRTIV LGAPF Y PL + G GG RE+ECIR DGT +RLT RSLD R + N G GALRPYVVAVLRFA WAAT PA+R+AAA AA AAEAERNRRFV+LQ L S PPPP
Sbjct: 1 MTEPRRCLLFENGAALAVFGDDGDHHTRQSGDERGNSAVVLEPSGACFAEVRQDGTCHRQLSDFCRRDLIPHVAAVSSFRNAHSPRPYLSQRIHATLEQETHSSNGTXXXXXXXXXXXXTPSRIAHWPA--AAEPTCRHSTSNSSSTFVVRGADGSVEVRAAGGNARLALSASGTVAEVDYAVALPPGPGAAGGGRVWVTRRFLVGGSAAPPFDDVPPEFSHALSVAVRESRSAXXXXXXXXXXXXXXXXXXXXGDVSLGRVSPAAAAAGGTVSGKGGE-RGLVAVELPRPEERPDHASWDTVQQGPSLDS--HRDPLAPLGYYGD---RR--WCDGAAPTFATRAATASASAAAAGGRLLSVDVMKLAG--GQGYAGELAAVVESTGCCTYRIVVGGGGHHRGAG------EGGVGVHVVVHADGSEVWLEGDFVRLVRPPAAAGVPAMTAAAAE---------AGGGWTSMSLGNIASRAIALRQQFLQCSGNPAAAAAAAAGRRGPGEPQVTVKIRPSLV-VVQPPSALSSPSSSSSPVEAVVRNAAAPRPTNKPYAPPEEGGARWLGSSSSRGRMAAGSPSVVESVERGGASFVAFADGRARGTFADRTIVCLGAPFFYRPL---RGSRCGVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVECIRADGTVLRLTRRSLDRRGSFGGRSGGGNIPAGGDCGVGALRPYVVAVLRFADWAATHPADRRAAAGREAAXXXXXAAEAERNRRFVDLQLLAAKRSVPPPP 751
BLAST of mRNA_L-elsbetiae_contig1669.4509.1 vs. uniprot
Match: A0A6H5KVD6_9PHAE (DUF4524 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD6_9PHAE) HSP 1 Score: 410 bits (1054), Expect = 6.210e-126 Identity = 359/918 (39.11%), Postives = 414/918 (45.10%), Query Frame = 1
Query: 82 EMVNPSRALLFENGAALGVFHAEGD------GNRCRGGRSVVVMEPSGASFTHVRQDGGCHRQLSEFCRRALIPQVAAVTRFRNAHSPRPYVSERLMSTPSTRRQESDGKRGRA---------PSRLAQWPAGGAVAATAGGDVEGAPRYCTTRAADGTVEVRAVGGNARLTLSASRTLAEVDYAVAIPSGSGGL---------------------------------------------------------------------------ASRVWITRQFLVGSRSS----DVPSEFSHALAAALR-----AXXXXXXXXXXXAGWGGEGDDVVVDEGFVGASATGXXXXXXXXAGEGEFFVASELPRPQSRLNHPSWDTVHVSPGFDNELHLELAAPLGYGGVHPARRAFTCHGXXXXXXXXXXXXXXXXXXAGCLLSVDVMKLAAEDGRGFAGGLAAVVETAGGCTYRVVFGGGXXXXXXXXXXXXMRDNVNVHVAVHADGTEVWLEGDFVRL--------------------------------------------------PAGSTVAXXXXXXXXXXXXXXXXXSP------GGWTSMSLGDIACRALALRRQFVALPETEAAAAAALHSLLPFGVPRPVRDAKPSSAPTTRRPQALS-------PVVA----AAAGRTPTRGARAAXXXXXXXXXXXXXXXXTPAGT-TVVESVDRGGASFVAFADGRARGAFADRTIVTLGAPFSYPPLPPPQRRHQGAGGAGHG----RVAAPFGATPPLGGG------------DRGPEVEDREIECIRPDGTAVRLTERSLDPRRCLSAAAAHDNSLLPG----GALRPYVVAVLRFAGWAATPPAERQAAAENGAAGRTAAAAEAERNRRFVELQRLVKLASKPPPP 2274
EM P R LLFENGAAL VF GD +R G S VV+EPSGA FT VRQDG CHRQLS+FCRR LIP VAA + FRNAHSPRPY+S+R+ +T S PSR+A WPA A R ADG VEVRA GGNARLTLSAS T+AEVDYAVA+P G G + RVW+TR+FLVG ++ DVP EFSHAL+ A+R A GG GD + G A+ GEG VA ELP P+ R +H SWDT+H P D+ H + APLGY G RR + G LLSVDVM+LA +G+G+AG LA VVE+ GGCTYR+V G G V VHV VHADG+EVWLEG FVRL PA + VA GGWTSMSLG I RA+ALR+QF+ A AAAA + G R + +P + P ALS PV A AAA R T+ T AG+ +VVE V+RGGASFVAFADGRARGAFADRTIV+LGAP Y PL R GG R + +G+ P G + E EDREIECIR DGT +RLT SLD R + NS G GALRPYVVAVLRFA WAAT PA+R+AAA AAG AAEAERNRRFV+LQ L S PPP
Sbjct: 18 EMTEPLRYLLFENGAALAVFGDRGDYHTSTRQSRNERGNSAVVLEPSGACFTQVRQDGTCHRQLSDFCRRDLIPHVAAASSFRNAHSPRPYLSQRIHATLEQGPHNSSXXXXXXXXXXXXXXXPSRIAHWPA--AAEPXXXXXXXXXXSTFVVRGADGRVEVRAAGGNARLTLSASGTVAEVDYAVALPPGPGAAXXXXXXXXXXXXXXXXXXXXWREGXXXXXXXXXXXXXXXXXGQQQENPGAAEGRVAANRSSRVDGEGFGXXXXXXSRRVWVTRRFLVGRSAAPPFDDVPPEFSHALSVAVRESQSAAATAAAAVETGRNSVGGGGDFSLGRVGPAAAAVAAAGGTVSRKGGEGGL-VAVELPLPEERPDHASWDTLHQGPSLDS--HRDPLAPLGYYGDR--RRCDSA--APTFAARSATGSASAAAAGGRLLSVDVMELA--EGQGYAGELAIVVESTGGCTYRIVVGDGGHHRRAG------EGGVGVHVVVHADGSEVWLEGGFVRLVRPPXXXXXXXXXXXXXXXXXXXRLFHVSAASTVRFRVPSPRAEQHPIGRPAAAAVAAASALGAPGIHQGVRATEAAAAEAGGGWTSMSLGAITSRAIALRQQFLRCSGIAATAAAA--GIRGAGDHRDIVKIRPPRV-VVQPPAALSSPSSSSSPVEAVAGNAAAPRPTTKPYAPPEAGGARWLGSPSSRGGTAAGSPSVVELVERGGASFVAFADGRARGAFADRTIVSLGAPVFYRPL-----RGSRCGGXXXXXXXXRGISYYGSGGPKGVATAVVRPGCSDVDEEEKEEEDREIECIRADGTVLRLTRHSLDRRGSFGGRSGGGNSPASGNCGVGALRPYVVAVLRFADWAATHPADRRAAAGREAAGXXXXAAEAERNRRFVDLQLLAAKRSVAPPP 910 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1669.4509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1669.4509.1 >prot_L-elsbetiae_contig1669.4509.1 ID=prot_L-elsbetiae_contig1669.4509.1|Name=mRNA_L-elsbetiae_contig1669.4509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=758bp PLGCISLALYTNHRNRSSPVVTVAEVSEMVNPSRALLFENGAALGVFHAEback to top mRNA from alignment at L-elsbetiae_contig1669:7051..17536- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1669.4509.1 ID=mRNA_L-elsbetiae_contig1669.4509.1|Name=mRNA_L-elsbetiae_contig1669.4509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10486bp|location=Sequence derived from alignment at L-elsbetiae_contig1669:7051..17536- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1669:7051..17536- >mRNA_L-elsbetiae_contig1669.4509.1 ID=mRNA_L-elsbetiae_contig1669.4509.1|Name=mRNA_L-elsbetiae_contig1669.4509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4548bp|location=Sequence derived from alignment at L-elsbetiae_contig1669:7051..17536- (Laminarionema elsbetiae ELsaHSoW15)back to top |