mRNA_L-elsbetiae_contig16688.4508.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16688.4508.1
Unique NamemRNA_L-elsbetiae_contig16688.4508.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16688.4508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16688contigL-elsbetiae_contig16688:1890..2834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size945
Cds size675
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16688.4508.1prot_L-elsbetiae_contig16688.4508.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16688 2026..2700 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.8297243-UTR-L-elsbetiae_contig16688:1889..20251622815692.8297243-UTR-L-elsbetiae_contig16688:1889..2025Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16688 1890..2025 +
1691683041.755031-UTR-L-elsbetiae_contig16688:1889..20251691683041.755031-UTR-L-elsbetiae_contig16688:1889..2025Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16688 1890..2025 +
1622815692.852876-UTR-L-elsbetiae_contig16688:2700..28341622815692.852876-UTR-L-elsbetiae_contig16688:2700..2834Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16688 2701..2834 +
1691683041.7762048-UTR-L-elsbetiae_contig16688:2700..28341691683041.7762048-UTR-L-elsbetiae_contig16688:2700..2834Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16688 2701..2834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.8420465-CDS-L-elsbetiae_contig16688:2025..27001622815692.8420465-CDS-L-elsbetiae_contig16688:2025..2700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16688 2026..2700 +
1691683041.7671134-CDS-L-elsbetiae_contig16688:2025..27001691683041.7671134-CDS-L-elsbetiae_contig16688:2025..2700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16688 2026..2700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16688.4508.1

>prot_L-elsbetiae_contig16688.4508.1 ID=prot_L-elsbetiae_contig16688.4508.1|Name=mRNA_L-elsbetiae_contig16688.4508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
MRPPAPPPRGTARARRPRRWCPPPPRRRSARPRWWGPASSAPRRPPPRPP
PPPPLAPGSSSRRPGPRPRRPPLARRLRPRWDRRRPLRPRWDRRPLRPPS
ALQRRPRWALSRGWAACPCCRQPRSARASPRLRKGRVLLSPPLPRSRRHY
QPRSPRRSETATRSSCRSRSWGGSGRIPSGPGSPRGPGAPRAPGSPRSRW
CWWGRRRGRRRWWCWCRCRWRPAP*
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mRNA from alignment at L-elsbetiae_contig16688:1890..2834+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16688.4508.1 ID=mRNA_L-elsbetiae_contig16688.4508.1|Name=mRNA_L-elsbetiae_contig16688.4508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=945bp|location=Sequence derived from alignment at L-elsbetiae_contig16688:1890..2834+ (Laminarionema elsbetiae ELsaHSoW15)
CCCACCCGTTTTATTCTCCGCGCCGGGGCGGGCCCCCCCAAAACAATATC
AATAATGTAGTATATTCCCTCGCTCCGTCTCCGGCTCCGGCTTAGGCTCT
ACAGAGCGAGGATTCCCGCCGCAAGGAGCAGGGCGCATGAGGCCGCCAGC
GCCGCCCCCGAGGGGCACGGCTCGAGCCCGAAGGCCCCGTCGGTGGTGTC
CCCCTCCGCCTCGGCGGCGGTCCGCCCGTCCTCGTTGGTGGGGGCCGGCG
TCGTCGGCACCGCGGCGCCCCCCTCCTCGCCCTCCCCCCCCGCCGCCGTT
GGCGCCGGGGTCATCATCTCGACGTCCCGGTCCCCGTCCACGCCGGCCTC
CGTTGGCGCGGCGGCTCCGGCCTCGGTGGGATCGTCGGCGACCACTCCGG
CCTCGGTGGGATCGGCGGCCACTCCGGCCTCCGTCGGCGCTACAACGCCG
GCCTCGGTGGGCGTTGTCTCGGGGGTGGGCAGCATGCCCGTGCTGTCGCC
AACCACGGTCGGCTCGGGCGTCGCCGCGGCTTCGGAAGGGGAGGGTGTTG
TTGTCGCCCCCCCTCCCGCGGAGCCGCCGGCACTACCAGCCGCGGAGCCC
CCGGCGCTCGGAGACGGCGACTCGTAGTAGCTGCCGAAGTAGGAGTTGGG
GAGGCAGCGGACGGATACCGTCGGGGCCGGGGTCTCCCCGGGGGCCAGGG
GCGCCGCGGGCGCCGGGGTCCCCCCGCAGTCGGTGGTGCTGGTGGGGCCG
GCGTCGGGGGCGCCGCCGGTGGTGGTGCTGGTGTCGATGCCGGTGGAGGC
CTGCGCCCTAGCGAAGAAGAAGGGTCCGTTGCCGTTGCCGTTGCCGTTGT
TGCCGGCGATAAGGAGGACCGCGAGGAGGCCCAACATCCTGATTGCCGAA
GTAGCCGGTGCCATCTTGGATTAGATACGAAAAGTAGTTATTAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16688:1890..2834+

>mRNA_L-elsbetiae_contig16688.4508.1 ID=mRNA_L-elsbetiae_contig16688.4508.1|Name=mRNA_L-elsbetiae_contig16688.4508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig16688:1890..2834+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGCCGCCAGCGCCGCCCCCGAGGGGCACGGCTCGAGCCCGAAGGCC
CCGTCGGTGGTGTCCCCCTCCGCCTCGGCGGCGGTCCGCCCGTCCTCGTT
GGTGGGGGCCGGCGTCGTCGGCACCGCGGCGCCCCCCTCCTCGCCCTCCC
CCCCCGCCGCCGTTGGCGCCGGGGTCATCATCTCGACGTCCCGGTCCCCG
TCCACGCCGGCCTCCGTTGGCGCGGCGGCTCCGGCCTCGGTGGGATCGTC
GGCGACCACTCCGGCCTCGGTGGGATCGGCGGCCACTCCGGCCTCCGTCG
GCGCTACAACGCCGGCCTCGGTGGGCGTTGTCTCGGGGGTGGGCAGCATG
CCCGTGCTGTCGCCAACCACGGTCGGCTCGGGCGTCGCCGCGGCTTCGGA
AGGGGAGGGTGTTGTTGTCGCCCCCCCTCCCGCGGAGCCGCCGGCACTAC
CAGCCGCGGAGCCCCCGGCGCTCGGAGACGGCGACTCGTAGTAGCTGCCG
AAGTAGGAGTTGGGGAGGCAGCGGACGGATACCGTCGGGGCCGGGGTCTC
CCCGGGGGCCAGGGGCGCCGCGGGCGCCGGGGTCCCCCCGCAGTCGGTGG
TGCTGGTGGGGCCGGCGTCGGGGGCGCCGCCGGTGGTGGTGCTGGTGTCG
ATGCCGGTGGAGGCCTGCGCCCTAGATGAGGCCGCCAGCGCCGCCCCCGA
GGGGCACGGCTCGAGCCCGAAGGCCCCGTCGGTGGTGTCCCCCTCCGCCT
CGGCGGCGGTCCGCCCGTCCTCGTTGGTGGGGGCCGGCGTCGTCGGCACC
GCGGCGCCCCCCTCCTCGCCCTCCCCCCCCGCCGCCGTTGGCGCCGGGGT
CATCATCTCGACGTCCCGGTCCCCGTCCACGCCGGCCTCCGTTGGCGCGG
CGGCTCCGGCCTCGGTGGGATCGTCGGCGACCACTCCGGCCTCGGTGGGA
TCGGCGGCCACTCCGGCCTCCGTCGGCGCTACAACGCCGGCCTCGGTGGG
CGTTGTCTCGGGGGTGGGCAGCATGCCCGTGCTGTCGCCAACCACGGTCG
GCTCGGGCGTCGCCGCGGCTTCGGAAGGGGAGGGTGTTGTTGTCGCCCCC
CCTCCCGCGGAGCCGCCGGCACTACCAGCCGCGGAGCCCCCGGCGCTCGG
AGACGGCGACTCGTAGTAGCTGCCGAAGTAGGAGTTGGGGAGGCAGCGGA
CGGATACCGTCGGGGCCGGGGTCTCCCCGGGGGCCAGGGGCGCCGCGGGC
GCCGGGGTCCCCCCGCAGTCGGTGGTGCTGGTGGGGCCGGCGTCGGGGGC
GCCGCCGGTGGTGGTGCTGGTGTCGATGCCGGTGGAGGCCTGCGCCCTAG
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