mRNA_L-elsbetiae_contig16687.4507.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16687.4507.1
Unique NamemRNA_L-elsbetiae_contig16687.4507.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16687.4507.1 vs. uniprot
Match: A0A6H5K7B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.020e-33
Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:   10 QNRSIVEDLLSMICPDGFVAAASTLGDLVAHHSCASRVYFPNACGQKQLSLENARPGIKVFGMSSQEEEYTVYQHWKNTPDQLAEMMTFNVTGFRQCTS 306
            +NR+I EDL  MIC DGFVAA STL  +V+HHS A R+YFP AC +K  +L   RPG +VFGM+S  ++YTVYQ W NT DQL EMMTF+V GF QCT+
Sbjct:  442 KNRTIGEDLRYMICADGFVAARSTLRHVVSHHSSAKRMYFPMACNEKLKTLSTERPGTQVFGMASWNDQYTVYQRWNNTADQLTEMMTFDVGGFEQCTA 540
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BLAST of mRNA_L-elsbetiae_contig16687.4507.1 vs. uniprot
Match: D7G1L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L4_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 4.720e-31
Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:   10 QNRSIVEDLLSMICPDGFVAAASTLGDLVAHHSCASRVYFPNACGQKQLSLENARPGIKVFGMSSQEEEYTVYQHWKNTPDQLAEMMTFNVTGFRQCTS 306
            +NR++ EDLLSMIC DGFVAA STLG +V+H S A R+YFP +C ++  +L    PG +VFGM+S + EYTV++ W NT DQ+AEMMT +V GF QCT+
Sbjct:  437 KNRTMEEDLLSMICADGFVAARSTLGRVVSHLSSAKRMYFPTSCNEELKNLGTEGPGTQVFGMASWDHEYTVFRRWNNTADQIAEMMTADVGGFEQCTA 535
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BLAST of mRNA_L-elsbetiae_contig16687.4507.1 vs. uniprot
Match: D7G610_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.020e-18
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:   16 RSIVEDLLSMICPDGFVAAASTLGDLVAHHSCASRVYFPNACGQKQLSLENARPGIKVFGMS-SQEEEYTVYQHWKNTPDQLAEMMTFNVTG-FRQC 300
            RS+ EDL SM+C D    A S+L + +++HS A+RVY+P  C      L   RP  KV+G+   +   Y+VY+HW+NTP+Q AEM+ +NVT  F++C
Sbjct:  308 RSMGEDLQSMLCADSLGLAKSSLVNFLSYHSTANRVYYPWRCNHDLRELARLRPKTKVYGLQLDRSGSYSVYRHWENTPEQRAEMLGYNVTTTFQRC 404
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BLAST of mRNA_L-elsbetiae_contig16687.4507.1 vs. uniprot
Match: D7G2M2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M2_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.530e-16
Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 1 
Query:   10 QNRSIVEDLLSMICPDG-FVAAASTLGDLVAHHSCASRVYFPNAC---------GQKQLSL---ENARPGIKVFGMSSQE-EEYTVYQHWKNTPDQLAEMMTFNVTGFRQCTSGPHSIALGG 333
            ++R++ ED LSM+C  G  V A S+L  L+AHHS ASR+YFP  C         G    SL   ++    +KV+G+     E Y++   W NT DQ+ EM+TFNV+ F QC     S   GG
Sbjct:  395 KDRTMEEDFLSMMCVGGGLVTARSSLSLLLAHHSSASRLYFPRPCAGSLEFYTRGSPDASLNDLDDELQAVKVYGVKPPGMERYSLDVSWNNTADQVNEMLTFNVSSFEQCGGSKSSALRGG 516
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BLAST of mRNA_L-elsbetiae_contig16687.4507.1 vs. uniprot
Match: A0A6H5KPU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPU7_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 4.470e-6
Identity = 21/47 (44.68%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:  181 IKVFGMSSQEEEYTVYQHWKNTP-DQLAEMMTFNVTGFRQCTSGPHS 318
            ++V+GM+ ++EEY+ Y +W N+   +LA+MMT+NV+GF +CT    S
Sbjct:    5 LRVYGMTWRDEEYSPYGNWTNSSAHELAQMMTYNVSGFAECTGSSGS 51
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16687.4507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K7B3_9PHAE1.020e-3361.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1L4_ECTSI4.720e-3157.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G610_ECTSI3.020e-1844.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G2M2_ECTSI2.530e-1640.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KPU7_9PHAE4.470e-644.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16687contigL-elsbetiae_contig16687:581..1304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.7814329-CDS-L-elsbetiae_contig16687:580..7661622815692.7814329-CDS-L-elsbetiae_contig16687:580..766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16687 581..766 +
1691683041.7301364-CDS-L-elsbetiae_contig16687:580..7661691683041.7301364-CDS-L-elsbetiae_contig16687:580..766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16687 581..766 +
1622815692.7933698-CDS-L-elsbetiae_contig16687:1154..13041622815692.7933698-CDS-L-elsbetiae_contig16687:1154..1304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16687 1155..1304 +
1691683041.7441485-CDS-L-elsbetiae_contig16687:1154..13041691683041.7441485-CDS-L-elsbetiae_contig16687:1154..1304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16687 1155..1304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16687.4507.1prot_L-elsbetiae_contig16687.4507.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16687 581..1304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16687.4507.1

>prot_L-elsbetiae_contig16687.4507.1 ID=prot_L-elsbetiae_contig16687.4507.1|Name=mRNA_L-elsbetiae_contig16687.4507.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MSFQNRSIVEDLLSMICPDGFVAAASTLGDLVAHHSCASRVYFPNACGQK
QLSLENARPGIKVFGMSSQEEEYTVYQHWKNTPDQLAEMMTFNVTGFRQC
TSGPHSIALGG*
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mRNA from alignment at L-elsbetiae_contig16687:581..1304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16687.4507.1 ID=mRNA_L-elsbetiae_contig16687.4507.1|Name=mRNA_L-elsbetiae_contig16687.4507.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=724bp|location=Sequence derived from alignment at L-elsbetiae_contig16687:581..1304+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTTTCAGAACCGTTCAATTGTGGAAGACCTACTCTCGATGATCTG
CCCGGACGGCTTTGTGGCGGCCGCTTCGACGCTAGGGGATTTGGTTGCGC
ATCACTCGTGTGCCAGCCGGGTGTACTTCCCCAACGCGTGTGGCCAGAAA
CAACTTAGTCTTGAGAACGCGCGTCCAGGGATCAAGGTACATCAGTGCCT
CTAGTTCCATCGTTCTGGCCGTTCCCAAAGCATGGGCGAAACACTTTCGG
GTTTGTTAAGCGGGCTTGTCTTGGAAAAGGGTCGCCTTTCCTTTTTCGGG
AGGGCGATGTCGAGGACAAGTTTTGTGGTGTCGATAAGGGTCTTTGCAGC
CGCCATCCCCGAAAGGTGATTCCTTTTATTGAAGATCAAGGCTGCAGTTA
TCGCCCCCCATCAACCATGGTGCTCTCAGCCTCTTTCCAACCTGCGCTGC
TTACGATATAGAAGTATTCAACTTGCAACGCTTTTTGCATCATCTGACCA
TTTTCCGTCGTAGCCACTCTCTGTGCTATTTTGACTGTTTTTTTTTTCAT
TATCTTTTTGCGCATCCTGTCCAGGTGTTTGGAATGTCATCGCAGGAAGA
AGAGTATACAGTCTATCAACACTGGAAAAATACCCCCGACCAACTGGCGG
AAATGATGACCTTCAACGTAACTGGCTTTCGGCAATGTACCAGTGGTCCC
CACTCCATTGCATTGGGGGGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16687:581..1304+

>mRNA_L-elsbetiae_contig16687.4507.1 ID=mRNA_L-elsbetiae_contig16687.4507.1|Name=mRNA_L-elsbetiae_contig16687.4507.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig16687:581..1304+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTTTCAGAACCGTTCAATTGTGGAAGACCTACTCTCGATGATCTG
CCCGGACGGCTTTGTGGCGGCCGCTTCGACGCTAGGGGATTTGGTTGCGC
ATCACTCGTGTGCCAGCCGGGTGTACTTCCCCAACGCGTGTGGCCAGAAA
CAACTTAGTCTTGAGAACGCGCGTCCAGGGATCAAGATGTCTTTTCAGAA
CCGTTCAATTGTGGAAGACCTACTCTCGATGATCTGCCCGGACGGCTTTG
TGGCGGCCGCTTCGACGCTAGGGGATTTGGTTGCGCATCACTCGTGTGCC
AGCCGGGTGTACTTCCCCAACGCGTGTGGCCAGAAACAACTTAGTCTTGA
GAACGCGCGTCCAGGGATCAAGGTGTTTGGAATGTCATCGCAGGAAGAAG
AGTATACAGTCTATCAACACTGGAAAAATACCCCCGACCAACTGGCGGAA
ATGATGACCTTCAACGTAACTGGCTTTCGGCAATGTACCAGTGGTCCCCA
CTCCATTGCATTGGGGGGGTAGGTGTTTGGAATGTCATCGCAGGAAGAAG
AGTATACAGTCTATCAACACTGGAAAAATACCCCCGACCAACTGGCGGAA
ATGATGACCTTCAACGTAACTGGCTTTCGGCAATGTACCAGTGGTCCCCA
CTCCATTGCATTGGGGGGGTAG
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