mRNA_L-elsbetiae_contig1668.4501.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1668.4501.1
Unique NamemRNA_L-elsbetiae_contig1668.4501.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1668.4501.1 vs. uniprot
Match: D8LFY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY5_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 6.690e-11
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  115 GLWESDSDDDDNSLVSAPRSSNAGSPTAGGGATPKLRRRLSRKNLFRRRRPKADSLTPTAIQG 303
            GL ESD+DDD NSL S PRSSNAGSP  GGG TPKLRR+LS+++LFRRR+ K D L  +  +G
Sbjct:   25 GLSESDTDDD-NSLGSVPRSSNAGSPP-GGGTTPKLRRKLSKRSLFRRRKSKVDPLGSSGSKG 85
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1668.4501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFY5_ECTSI6.690e-1165.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1668contigL-elsbetiae_contig1668:1993..7082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size314
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1668.4501.1prot_L-elsbetiae_contig1668.4501.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1668 1993..7082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.435449-CDS-L-elsbetiae_contig1668:1992..20551622815692.435449-CDS-L-elsbetiae_contig1668:1992..2055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1668 1993..2055 -
1691683041.5329928-CDS-L-elsbetiae_contig1668:1992..20551691683041.5329928-CDS-L-elsbetiae_contig1668:1992..2055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1668 1993..2055 -
1622815692.4455519-CDS-L-elsbetiae_contig1668:6643..67811622815692.4455519-CDS-L-elsbetiae_contig1668:6643..6781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1668 6644..6781 -
1691683041.5433905-CDS-L-elsbetiae_contig1668:6643..67811691683041.5433905-CDS-L-elsbetiae_contig1668:6643..6781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1668 6644..6781 -
1622815692.4567325-CDS-L-elsbetiae_contig1668:6971..70821622815692.4567325-CDS-L-elsbetiae_contig1668:6971..7082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1668 6972..7082 -
1691683041.5519576-CDS-L-elsbetiae_contig1668:6971..70821691683041.5519576-CDS-L-elsbetiae_contig1668:6971..7082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1668 6972..7082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1668.4501.1

>prot_L-elsbetiae_contig1668.4501.1 ID=prot_L-elsbetiae_contig1668.4501.1|Name=mRNA_L-elsbetiae_contig1668.4501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MASSAPASPRPSQKKGIEGKRTMSGISGARASDHQPEEGLWESDSDDDDN
SLVSAPRSSNAGSPTAGGGATPKLRRRLSRKNLFRRRRPKADSLTPTAIQ
GAVL
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mRNA from alignment at L-elsbetiae_contig1668:1993..7082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1668.4501.1 ID=mRNA_L-elsbetiae_contig1668.4501.1|Name=mRNA_L-elsbetiae_contig1668.4501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5090bp|location=Sequence derived from alignment at L-elsbetiae_contig1668:1993..7082- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTCCTCTGCCCCAGCTTCGCCTCGACCGAGTCAGAAGAAGGGGAT
CGAAGGGAAGCGCACCATGAGCGGAATTTCTGGCGCGCGGGCCTCGGACC
ACCAGCCGGAGGTACAGCGCAATCATGGGTCGGAAGTCTTACCTGGCAGC
AGTAGTATTCGGTAGAGGGTGCTGAGTCTGCTGTGCTCTCTACTCCCCTG
CTGCTCTCAGAAAGATAAGCACCTGCTAATGTGTTTTTTTTTTTTGCGTG
GCGTGTTCGCAATGGTGTGGGTTTGTTCCTCTGGCCGGTGCACGGCAGCA
GGAGGGCTTGTGGGAATCGGACTCGGACGATGATGACAACTCGCTGGTCT
CAGCGCCGAGATCGAGCAACGCCGGTTCGCCCACGGCGGGAGGAGGCGCA
ACGCCCAAGCTGCGGAGGAGACTGAGCAGGAAGAACCTGGTGAGCCTCAC
CAGGTCGCGTCAGCCCATCAGCAGTAGGGATTTTGCTGTACATAAGGGAC
ATCCATCATCGGGTGCGGAAAAAAAAGGAACCAAAGGTTCCCTCTCGGCC
TAACTAAACTCACGAGCGGGGGTACATTTTACCGATGGTATCCTACCACC
CCGGTGCCGGCGTGCCCATCTCCTCGGATGCATGGAATATCGGTGCCGCG
AGCCTCGAGAAACACTGTCCAGAGAGTACCCCGCGCCTGCTGCTATCTAT
TTACACACATGTAGGTACAGAGAACATACATGCATAGCGCTGTCCTCGTT
TTGCGCTCCACGTGTACGTAGGACACAAGACGGAACAAACGGGCTGGCGT
TTGCGTTTTTGTGTGCAGGTGCCAGGTGTAGGTTTAGGTTTTTGACGCGG
TGGGGCGCACTCCGAACGGCAGCCTTTTACCGGGTGTTGTGAGTTATAGC
GCCCCTGTAGAATCCGTGTTCTGTCGGAAGGTATTCGGTGCTCGTAAGAG
CGTCCTGCCCGTCCCGCCCGTCAGGCGCAGTCGTGTAAGAAGTGCTGTAC
ATAAGCATGTGTGTACGCATGGGGATGGAGGGGGTCCAGGGCTCTTCGCC
GACGGCTGTGATATCGCAACGATGTAGGTACATAATATGTGGTAACCGAG
TCGCATCAAAGCAACCAGCCGGCCGAGCCTTCCAAATAATTGTGGGTGTG
CTTCTACTCGGAGGGACCGATACAACGCATCACTGCTGCATGTATGAAAT
ACAAACATAGACTACATACATACCATGGACTACAACCACTACAATCCAAC
TCCACACAGAACCCCGTCTCTAAAAAAGTAGGTGAATGCGGGAGGTTCCG
TCCTCTCTGTAGATGTTCCTCCTTGTCCAAATAACAAATACAGCCAACCA
CCGCGATGGCAGGGGCAAACCTGATGACACTTTTTCGCCGCCACCCTTGG
ACGAAACTGCTGTTGATCTGTTATGGGTTCAAACCACTTCTGGTTGTCTT
GGTTCCTGGCAGGCACTGAGAGCACCACCATGATGCCTACATACGGATTT
ATGTGCTTGGGATGGTTCCAAAAGCACACGATGGCGTTGTGTTGATGTCA
CCCATTCTGAGCAGAAAATAGAAAATACATACCTAGGAGTGAGGAGGGCA
CAGGCTCCTTCCTGTCTAGGACAGATGCCGGTGCCGTTGCAGTATCCACC
CACTGCCAAGGGCGGCTGATCTTCTTCCGTGATATGTACGAGGAGAGAGA
GGTAGAAAAGAAGTGGCCCTCGGGGCAAGAGGAGAGTCGAAGACTCCCCG
GATCTGCCCTCGGTAATTGGCCCGGGACTACGGAAGATACGAATCTCCAC
CGATGTATTTCTTGTCACTCTCTCGATGGCAAGTTGCCCCTATGGAGCCA
TATCTTCCTACACTTTGCATGTGTACTAATGTTCAGATAATATTGCCGAA
GTGTGTCCTCCACAGGAGTACCATGCATGCATAACTCTACCTCGCCCGAG
AAATTCGATGGCGTATTTACGTACATGTGCATATTTTTTTTTTATGTACA
AACAATCTCGGAATCTCTACGTGGGCTCCCCGGGGGGCGGGGGGGGGACG
AATTCCAAATTTCACAGCCAGCTTTCTCTCACCATGTGGGGGGGGTATCG
CCGAGCGATGATGCGGCTTTTAGAGATGGATAGGATAACATGGTCAGGAT
TTTATCTTTCCAAGTGTAAGGTACGGTATAGTATGTACGGGGGCATTATG
TGCATATGGATGTTGATCGTAGATACCGTAGATACGTGTCGTCCGTATCT
ACCTCTCGGCGGTGGACGACATCGGCCATGAAATACATAACTCGTCTCCC
TCCTCCCTCAAAAGGATAATGCGGTGCGTAAAGTATGGGACTTTTTTTTT
TGTGCGACGACACTGCTGCCGTTGTTGGGTTGCCGGTGACAGCAGCAGGT
TCAGTCTGTGATGGCACTTTGGTTAAATGCTGCTGATTGGCCACTACTAG
ATAGATATATGTATTGATGTATGATGGCAACAAGCGTCATCATCGCGGAG
CTTTTGCCGGCGCGTGAAGCAAATCTACTCGATCCCTGGTGTTTTCTTCT
GTCACGCTTAGCGTCGTCCACCACCTTGGTATGTACGCAGCACGTATACC
GTAGGTGACACAAGATACCACGCCCCCTGGACGGATTTTCAAAGCCTGGT
TCCCCCCCGGCAAGAGAAGTGCCAGTGCCGAAATGGGGTGGCGTTGGAAA
GATCTAAGTCGAGGGCTGTCCGAAAACGTGCCGTTTGGTGCTGGCACCCT
CTTCGTTACGGAGTAATGGAGCTCTCAAATTCGGTCCAGGGGGTGTGGTA
TCTTGTGTCACCTACGGTATACACCAGCCCTGGGGTCAAGTCTTATATAC
ACCAGTAGCTCGGTACAGCCACTTAGGCCTAAATCCGGCACATTAACCTA
GCCTGGTGTGTGGGTGTGGGTTAGGGTTAGGGTTTAGGGTTTAAGGTGGT
TAGGGTGCGTGTTAGGCCGACCGCCGTGGTGAACCAAAAGGCCGGAAACC
TAGCGTAGGCCTAGGTTTTTCGCGTCTACCTCCAACTGAAACCTAGGTTT
ATTACTCCGCTGGTGTAAAAGCAAAACACCAGGGCTTGTATGGACGAGGG
TGTGTGGTAAGTATGGTGGCTGCATGGATACCACCCCAGGCAGAGGGGGG
GGAGGGGGGGGCTCTTGATTTGCTGGTTTTTGGGAAGTATGAGCATGCTA
ACATGCTCGTGCCTTCTGTCAGACCTCGCCGCCGGTGGGATGCATGCAAG
AGCATATGGTGACGAAGTCCTGTTTTGGTGTTATTTTATGGACGTATTTT
TTGTATGCACATACTATAGGTGACACAAGATACCACACCCCCTGGGCCGA
ATTTTAGAGCTCCATTACCCCGTAACGAAGAAGGTGCCAGCACCCAACGA
CACATTTTCGGACAGCCCTCGCTCAGATCTTTCCAACGTACCCCCTTTCG
GCTCTGTCACTTTTCGGCTCTGTCACTCGTCTTGCGGCGGAGGAATCGAG
GTTTGAAAATATGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTATA
CGCATGCGGCCTTCACACACCCTTGCACGTAACAGCCACAGCAGTCTGCG
TTTTCGAGCGAGCCACCTCTAGAATTGCGTATTTGATCTGCGGTGACATT
GCATAAATTAGCCAAGAGCGCATGATGACATAATTCTTTCATTCGGTGTC
CTCCTGTGCGCAACACTCCGAAACATACTCAGGCAAGGAGGCCCCGAGTG
TTGCGCAGTACATAGAGCACAAATATAAACGCGAAGAATACAAAATAAAT
AAATACTCCGCCTGGCACACACACACACGCATCAAAACACACACACGCCA
GTCCAGTGCCGAGTTTTGACCACCAAGTCAGTGCCGAGAGTGACGCGCAC
ACAGCCAGACCGCCGACCGTGCAGCTTGTGATATACTTCGAAGTAGGAGC
ATAAACCCAGTAGCGAGGCGATTGGGTGGGCAACAGGGGTGCAGACAGCA
GGGACGGACGCAAGAGCGACGCGTTCGTTACTGATGAAACCAGGGGACCA
GTCAGCCCGTCTCACAGGGAAGGGGGGGCGGGGGGTCGCGGAAAGCACCG
CGCGTTTTATGTACCCTGCGAATTATGAAGAAGTTGGAAGTGCTGTTGGT
GAGAGAGCACACGGGCGGCGCCACGCTCGAGGCGTAGGGCCTATTTTTTC
TTTGTAGGTACAGTGTGTATGTTTACGCGCGTATACGACACAAGATAACA
CACCCCCTGGATCGATTTTCAAAGCTCAGTTACTCCGCAACGAGTGTGAC
TCTAATATTACCAAGCGACGTGCTTTCGGACAGCTCTTGATGAGATATTT
CTGACGCCGCCTTCCTCCCTTCTCGCGACTGACACTCTTCTCGCTGTGGA
CTACTTGAGCTTCGAAAATCGAAAATCGGTCCAGGGGGTGTGTTATCTTG
TGTCGTACGTACACGGTACGTATTCAGGCCTCTTGTTGAAGCAGACGTCC
CTTGTGCTAAATATATAGGTAACGCGGCCGTGTTCACCCCGAAAGAGCAC
GCGCGCGCGCGCGTGTGCGTGACGCCTCACTTTGCCTGGTGCTTGGTCCG
TCCCCGGCCCTTTATTTGTTTTTCATTACTACGTGTATTCATCATCCGAC
AATTCTAGTCCCGCCTAAATGTATTATTATTATCTACGTTTTCCACCCAA
TAGGTTTTACTTGTTGTGTATTACTTTTTGTTCTAAATCTGTGAGTTTGC
TCAGACCCTCGTCCAAGCGCGCTGGCAAACACGTGTGGGTATGTATCCAT
TCGTAGGGGAAAAAGATCTAAACGGCAGCAGGTTTTTGTTAGCAAAAGCC
CTCTCTCAAAACCTGCGTAAGAAAAGTATGTTTACATAAGTACATACTAG
AAGTACAACATACGCACGTACGTACGACTTCCGGCGTTTGCCTTGCGTTC
TCAACTCACACTTCTCGCACACGCACACGCACACGCACACGCACCCCCCG
CCCTCGCCCCCTCCCGCCCCTCTCCAGTTCCGCCGAAGAAGGCCGAAGGC
CGACTCCTTGACGCCCACGGCCATCCAGGGGGCCGTCCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1668:1993..7082-

>mRNA_L-elsbetiae_contig1668.4501.1 ID=mRNA_L-elsbetiae_contig1668.4501.1|Name=mRNA_L-elsbetiae_contig1668.4501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig1668:1993..7082- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTCCTCTGCCCCAGCTTCGCCTCGACCGAGTCAGAAGAAGGGGAT
CGAAGGGAAGCGCACCATGAGCGGAATTTCTGGCGCGCGGGCCTCGGACC
ACCAGCCGGAGATGGCGTCCTCTGCCCCAGCTTCGCCTCGACCGAGTCAG
AAGAAGGGGATCGAAGGGAAGCGCACCATGAGCGGAATTTCTGGCGCGCG
GGCCTCGGACCACCAGCCGGAGGAGGGCTTGTGGGAATCGGACTCGGACG
ATGATGACAACTCGCTGGTCTCAGCGCCGAGATCGAGCAACGCCGGTTCG
CCCACGGCGGGAGGAGGCGCAACGCCCAAGCTGCGGAGGAGACTGAGCAG
GAAGAACCTGGAGGGCTTGTGGGAATCGGACTCGGACGATGATGACAACT
CGCTGGTCTCAGCGCCGAGATCGAGCAACGCCGGTTCGCCCACGGCGGGA
GGAGGCGCAACGCCCAAGCTGCGGAGGAGACTGAGCAGGAAGAACCTGTT
CCGCCGAAGAAGGCCGAAGGCCGACTCCTTGACGCCCACGGCCATCCAGG
GGGCCGTCCTATTCCGCCGAAGAAGGCCGAAGGCCGACTCCTTGACGCCC
ACGGCCATCCAGGGGGCCGTCCTA
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