mRNA_L-elsbetiae_contig16676.4500.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16676.4500.1
Unique NamemRNA_L-elsbetiae_contig16676.4500.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16676.4500.1 vs. uniprot
Match: A0A6H5JRN5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRN5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 8.700e-16
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 APITRQGYLYKKGKSGLKNWQKRWFVLEGSRLIW 102
            APITRQGYLYKKGKSGLKNWQKRWFVLEGS+LIW
Sbjct:  527 APITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 560
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BLAST of mRNA_L-elsbetiae_contig16676.4500.1 vs. uniprot
Match: A0A835ZKA0_9STRA (LISK family protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKA0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.130e-12
Identity = 27/34 (79.41%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 APITRQGYLYKKGKSGLKNWQKRWFVLEGSRLIW 102
            APIT+ GYL+KKGK+GLKNWQ+RWFVLEG++LIW
Sbjct:  414 APITKCGYLHKKGKTGLKNWQRRWFVLEGTKLIW 447
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BLAST of mRNA_L-elsbetiae_contig16676.4500.1 vs. uniprot
Match: A0A3B3ZJ74_9GOBI (PH domain-containing protein n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B3ZJ74_9GOBI)

HSP 1 Score: 48.1 bits (113), Expect = 6.150e-6
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 APITRQGYLYKKGKSGLKNWQKRWFVLEGSRLIW 102
            A +T+QG+LYK+G SG+K W KRWFVL    L +
Sbjct:   53 AVVTKQGWLYKQGSSGVKQWNKRWFVLTDRCLFY 86
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BLAST of mRNA_L-elsbetiae_contig16676.4500.1 vs. uniprot
Match: UPI000A1C46D1 (pleckstrin homology domain-containing family A member 6 n=4 Tax=Oxudercinae TaxID=497678 RepID=UPI000A1C46D1)

HSP 1 Score: 48.1 bits (113), Expect = 2.460e-5
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 APITRQGYLYKKGKSGLKNWQKRWFVLEGSRLIW 102
            A +T+QG+LYK+G SG+K W KRWFVL    L +
Sbjct:  104 AVVTKQGWLYKQGSSGVKQWNKRWFVLTDRCLFY 137
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BLAST of mRNA_L-elsbetiae_contig16676.4500.1 vs. uniprot
Match: UPI00155E2083 (pleckstrin homology domain-containing family A member 6 isoform X1 n=60 Tax=Percidae TaxID=8165 RepID=UPI00155E2083)

HSP 1 Score: 47.8 bits (112), Expect = 3.360e-5
Identity = 18/34 (52.94%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 APITRQGYLYKKGKSGLKNWQKRWFVLEGSRLIW 102
            AP+++QG+LYK+  SG+K W KRWFVL    L +
Sbjct:  104 APVSKQGWLYKQASSGVKQWNKRWFVLADRCLFY 137
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BLAST of mRNA_L-elsbetiae_contig16676.4500.1 vs. uniprot
Match: UPI00155F457E (pleckstrin homology domain-containing family A member 6 isoform X17 n=2 Tax=Percidae TaxID=8165 RepID=UPI00155F457E)

HSP 1 Score: 47.8 bits (112), Expect = 3.360e-5
Identity = 18/34 (52.94%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 APITRQGYLYKKGKSGLKNWQKRWFVLEGSRLIW 102
            AP+++QG+LYK+  SG+K W KRWFVL    L +
Sbjct:  104 APVSKQGWLYKQASSGVKQWNKRWFVLADRCLFY 137
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BLAST of mRNA_L-elsbetiae_contig16676.4500.1 vs. uniprot
Match: A0A6A4SS30_SCOMX (PH domain-containing protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A6A4SS30_SCOMX)

HSP 1 Score: 47.0 bits (110), Expect = 6.290e-5
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    1 APITRQGYLYKKGKSGLKNWQKRWFVLEGSRLIW 102
            A +T+QG+LYK+  SG+K W KRWFVL    L +
Sbjct:  174 AEVTKQGWLYKQASSGVKQWNKRWFVLADRSLFY 207
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BLAST of mRNA_L-elsbetiae_contig16676.4500.1 vs. uniprot
Match: A0A8D2ZFF5_SCOMX (PH domain-containing protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D2ZFF5_SCOMX)

HSP 1 Score: 47.0 bits (110), Expect = 6.290e-5
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    1 APITRQGYLYKKGKSGLKNWQKRWFVLEGSRLIW 102
            A +T+QG+LYK+  SG+K W KRWFVL    L +
Sbjct:   99 AEVTKQGWLYKQASSGVKQWNKRWFVLADRSLFY 132
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BLAST of mRNA_L-elsbetiae_contig16676.4500.1 vs. uniprot
Match: UPI001FA8D0E4 (pleckstrin homology domain-containing family A member 6 isoform X14 n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=UPI001FA8D0E4)

HSP 1 Score: 47.0 bits (110), Expect = 6.290e-5
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    1 APITRQGYLYKKGKSGLKNWQKRWFVLEGSRLIW 102
            A +T+QG+LYK+  SG+K W KRWFVL    L +
Sbjct:   99 AEVTKQGWLYKQASSGVKQWNKRWFVLADRSLFY 132
[Close]
BLAST of mRNA_L-elsbetiae_contig16676.4500.1 vs. uniprot
Match: UPI001FA8E50F (pleckstrin homology domain-containing family A member 6 isoform X15 n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=UPI001FA8E50F)

HSP 1 Score: 47.0 bits (110), Expect = 6.290e-5
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    1 APITRQGYLYKKGKSGLKNWQKRWFVLEGSRLIW 102
            A +T+QG+LYK+  SG+K W KRWFVL    L +
Sbjct:   99 AEVTKQGWLYKQASSGVKQWNKRWFVLADRSLFY 132
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16676.4500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRN5_9PHAE8.700e-1697.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZKA0_9STRA2.130e-1279.41LISK family protein kinase n=1 Tax=Tribonema minus... [more]
A0A3B3ZJ74_9GOBI6.150e-655.88PH domain-containing protein n=1 Tax=Periophthalmu... [more]
UPI000A1C46D12.460e-555.88pleckstrin homology domain-containing family A mem... [more]
UPI00155E20833.360e-552.94pleckstrin homology domain-containing family A mem... [more]
UPI00155F457E3.360e-552.94pleckstrin homology domain-containing family A mem... [more]
A0A6A4SS30_SCOMX6.290e-552.94PH domain-containing protein n=1 Tax=Scophthalmus ... [more]
A0A8D2ZFF5_SCOMX6.290e-552.94PH domain-containing protein n=1 Tax=Scophthalmus ... [more]
UPI001FA8D0E46.290e-552.94pleckstrin homology domain-containing family A mem... [more]
UPI001FA8E50F6.290e-552.94pleckstrin homology domain-containing family A mem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16676contigL-elsbetiae_contig16676:2374..2478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.3983364-CDS-L-elsbetiae_contig16676:2373..24781622815692.3983364-CDS-L-elsbetiae_contig16676:2373..2478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16676 2374..2478 -
1691683041.5144532-CDS-L-elsbetiae_contig16676:2373..24781691683041.5144532-CDS-L-elsbetiae_contig16676:2373..2478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16676 2374..2478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16676.4500.1prot_L-elsbetiae_contig16676.4500.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16676 2374..2478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16676.4500.1

>prot_L-elsbetiae_contig16676.4500.1 ID=prot_L-elsbetiae_contig16676.4500.1|Name=mRNA_L-elsbetiae_contig16676.4500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=35bp
APITRQGYLYKKGKSGLKNWQKRWFVLEGSRLIW*
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mRNA from alignment at L-elsbetiae_contig16676:2374..2478-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16676.4500.1 ID=mRNA_L-elsbetiae_contig16676.4500.1|Name=mRNA_L-elsbetiae_contig16676.4500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=105bp|location=Sequence derived from alignment at L-elsbetiae_contig16676:2374..2478- (Laminarionema elsbetiae ELsaHSoW15)
GCGCCGATCACGCGGCAGGGTTACCTGTACAAGAAGGGCAAGAGCGGGCT
GAAGAACTGGCAGAAGCGCTGGTTCGTGCTGGAGGGGTCCAGGCTGATCT
GGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16676:2374..2478-

>mRNA_L-elsbetiae_contig16676.4500.1 ID=mRNA_L-elsbetiae_contig16676.4500.1|Name=mRNA_L-elsbetiae_contig16676.4500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=210bp|location=Sequence derived from alignment at L-elsbetiae_contig16676:2374..2478- (Laminarionema elsbetiae ELsaHSoW15)
GCGCCGATCACGCGGCAGGGTTACCTGTACAAGAAGGGCAAGAGCGGGCT
GAAGAACTGGCAGAAGCGCTGGTTCGTGCTGGAGGGGTCCAGGCTGATCT
GGTGAGCGCCGATCACGCGGCAGGGTTACCTGTACAAGAAGGGCAAGAGC
GGGCTGAAGAACTGGCAGAAGCGCTGGTTCGTGCTGGAGGGGTCCAGGCT
GATCTGGTGA
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