mRNA_L-elsbetiae_contig1667.4499.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1667.4499.1
Unique NamemRNA_L-elsbetiae_contig1667.4499.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1667.4499.1 vs. uniprot
Match: D7G4W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W5_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.210e-9
Identity = 56/103 (54.37%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:  121 RAPSSQKMLSVSEALVVRLAGSGFSTPASTAXXXXXXXXXXXXXXRSWGGSGVRRAGPRLDSCHERETVTVRGFLREVGFRVLADGGGDGGRRDMAASAVSIA 429
            R P   ++LSVSEAL+V+LA +G        XXXXXXXXXXXXXX           GP+L S HERE++ VRG LR+VGFR +ADGGGDG RR  A  A   A
Sbjct:  738 RRPLVPRILSVSEALIVQLAAAGAXXXXXXXXXXXXXXXXXXXXXXP--------GGPKLASGHERESMVVRGLLRDVGFRTVADGGGDGRRRQKALPAAVTA 832
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BLAST of mRNA_L-elsbetiae_contig1667.4499.1 vs. uniprot
Match: A0A6H5KTW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW3_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.730e-6
Identity = 50/103 (48.54%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:  121 RAPSSQKMLSVSEALVVRLAGSGFSTPASTAXXXXXXXXXXXXXXRSWGGSGVRRAGPRLDSCHERETVTVRGFLREVGFRVLADGGGDGGRRDMAASAVSIA 429
            R P + ++LSVSEAL+++LA           XXXXXXXXXXXXX             P+L S HERE++ VRG LR VGFR +ADGGG+G RR     A   A
Sbjct: 1932 RRPLAPRILSVSEALIIQLAAXXXXXXXXXXXXXXXXXXXXXXX--------XXXXXPKLASGHERESMVVRGLLRYVGFRTVADGGGNGRRRQKVLPAAVTA 2026
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1667.4499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4W5_ECTSI1.210e-954.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTW3_9PHAE3.730e-648.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1667contigL-elsbetiae_contig1667:22511..23516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size523
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.2451243-CDS-L-elsbetiae_contig1667:22510..229701622815692.2451243-CDS-L-elsbetiae_contig1667:22510..22970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 22511..22970 +
1691683041.4415894-CDS-L-elsbetiae_contig1667:22510..229701691683041.4415894-CDS-L-elsbetiae_contig1667:22510..22970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 22511..22970 +
1622815692.2572076-CDS-L-elsbetiae_contig1667:23454..235161622815692.2572076-CDS-L-elsbetiae_contig1667:23454..23516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 23455..23516 +
1691683041.4497888-CDS-L-elsbetiae_contig1667:23454..235161691683041.4497888-CDS-L-elsbetiae_contig1667:23454..23516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 23455..23516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1667.4499.1prot_L-elsbetiae_contig1667.4499.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1667 22511..23516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1667.4499.1

>prot_L-elsbetiae_contig1667.4499.1 ID=prot_L-elsbetiae_contig1667.4499.1|Name=mRNA_L-elsbetiae_contig1667.4499.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
PGSAAVEGAEGATSTSTTALLTKPCRQQERQQQQQERGQRRAPSSQKMLS
VSEALVVRLAGSGFSTPASTATASSGGGGKGKGKGRSWGGSGVRRAGPRL
DSCHERETVTVRGFLREVGFRVLADGGGDGGRRDMAASAVSIAEGEGKGK
GNNGPSAVRRGSGVGVGRAVLSTA
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mRNA from alignment at L-elsbetiae_contig1667:22511..23516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1667.4499.1 ID=mRNA_L-elsbetiae_contig1667.4499.1|Name=mRNA_L-elsbetiae_contig1667.4499.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1006bp|location=Sequence derived from alignment at L-elsbetiae_contig1667:22511..23516+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGGCTCTGCGGCAGTAGAGGGGGCAGAAGGAGCAACCTCGACCTCGAC
GACAGCGCTGCTGACCAAGCCTTGCCGGCAACAGGAGCGACAGCAGCAGC
AACAGGAACGAGGGCAGCGCAGGGCGCCATCGTCACAGAAAATGCTATCC
GTAAGCGAAGCGCTGGTCGTCAGGCTGGCCGGGAGCGGGTTCTCCACGCC
CGCGTCGACCGCTACCGCTAGCTCCGGCGGCGGCGGCAAGGGCAAAGGCA
AGGGGAGGAGCTGGGGCGGTAGTGGAGTAAGGCGAGCAGGACCCAGGCTC
GACTCGTGCCACGAGCGGGAGACTGTAACGGTGAGAGGTTTCCTAAGAGA
GGTGGGCTTCCGCGTCCTCGCTGACGGAGGCGGCGACGGTGGGCGGCGGG
ATATGGCGGCGTCAGCGGTGTCGATCGCCGAGGGGGAGGGCAAGGGAAAG
GGCAACAATGGTGAGCGTGGCGACGGTTCTGGCGGCAAGGCGTAGGGACA
GAAGTGATAACGGGAGAGCGTTAGTGGTGCTGTCAGATAAAACACGCGTC
TTCGACAGATTTGATGCTGTACATAAAACGATGGGGTTTTGTGGCACTCT
AGGGGTACTGTAGCACCAGAGTAATCTTTGTAGGATACCGAACATGGGAG
CTGTTGTATGGTTGCGCGGCGCTTGCCCAGTCGTGCCTGCTTGAAACAAC
CGATTTTTCAAGCCTCGTTGGCAAACTGAGATTTGGTGCGCGTTGGAAAG
CTTTCTGACGCCCTGGTACTAGCGAGCCACCAGCTCTTTTTCTTTACCTA
CCGGGGTGGGCGAGGAAAAAAACGAGGATCCATCCGTTCGCTTCTACATA
CAGGCAGTATTGTTTCGAACACAGCTGCCGCTATCTACCGCAAACGAAAA
AATTGCAACACTTCGTTCACCGGTGTTGTGTGTGCAACCGTAAGGTCCTT
CGGCCGTTCGACGCGGCAGCGGCGTAGGCGTTGGCAGGGCCGTTCTTTCT
ACGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1667:22511..23516+

>mRNA_L-elsbetiae_contig1667.4499.1 ID=mRNA_L-elsbetiae_contig1667.4499.1|Name=mRNA_L-elsbetiae_contig1667.4499.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig1667:22511..23516+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGGCTCTGCGGCAGTAGAGGGGGCAGAAGGAGCAACCTCGACCTCGAC
GACAGCGCTGCTGACCAAGCCTTGCCGGCAACAGGAGCGACAGCAGCAGC
AACAGGAACGAGGGCAGCGCAGGGCGCCATCGTCACAGAAAATGCTATCC
GTAAGCGAAGCGCTGGTCGTCAGGCTGGCCGGGAGCGGGTTCTCCACGCC
CGCGTCGACCGCTACCGCTAGCTCCGGCGGCGGCGGCAAGGGCAAAGGCA
AGGGGAGGAGCTGGGGCGGTAGTGGAGTAAGGCGAGCAGGACCCAGGCTC
GACTCGTGCCACGAGCGGGAGACTGTAACGGTGAGAGGTTTCCTAAGAGA
GGTGGGCTTCCGCGTCCTCGCTGACGGAGGCGGCGACGGTGGGCGGCGGG
ATATGGCGGCGTCAGCGGTGTCGATCGCCGAGGGGGAGGGCAAGGGAAAG
GGCAACAATGCCTGGCTCTGCGGCAGTAGAGGGGGCAGAAGGAGCAACCT
CGACCTCGACGACAGCGCTGCTGACCAAGCCTTGCCGGCAACAGGAGCGA
CAGCAGCAGCAACAGGAACGAGGGCAGCGCAGGGCGCCATCGTCACAGAA
AATGCTATCCGTAAGCGAAGCGCTGGTCGTCAGGCTGGCCGGGAGCGGGT
TCTCCACGCCCGCGTCGACCGCTACCGCTAGCTCCGGCGGCGGCGGCAAG
GGCAAAGGCAAGGGGAGGAGCTGGGGCGGTAGTGGAGTAAGGCGAGCAGG
ACCCAGGCTCGACTCGTGCCACGAGCGGGAGACTGTAACGGTGAGAGGTT
TCCTAAGAGAGGTGGGCTTCCGCGTCCTCGCTGACGGAGGCGGCGACGGT
GGGCGGCGGGATATGGCGGCGTCAGCGGTGTCGATCGCCGAGGGGGAGGG
CAAGGGAAAGGGCAACAATGGTCCTTCGGCCGTTCGACGCGGCAGCGGCG
TAGGCGTTGGCAGGGCCGTTCTTTCTACGGCGGTCCTTCGGCCGTTCGAC
GCGGCAGCGGCGTAGGCGTTGGCAGGGCCGTTCTTTCTACGGCG
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