mRNA_L-elsbetiae_contig1667.4498.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1667.4498.1
Unique NamemRNA_L-elsbetiae_contig1667.4498.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1667.4498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1667contigL-elsbetiae_contig1667:21653..22410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size760
Cds size756
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.2897139-CDS-L-elsbetiae_contig1667:21652..224081622815692.2897139-CDS-L-elsbetiae_contig1667:21652..22408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 21653..22408 +
1691683041.458128-CDS-L-elsbetiae_contig1667:21652..224081691683041.458128-CDS-L-elsbetiae_contig1667:21652..22408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 21653..22408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1667.4498.1prot_L-elsbetiae_contig1667.4498.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1667 21653..22408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1667.4498.1

>prot_L-elsbetiae_contig1667.4498.1 ID=prot_L-elsbetiae_contig1667.4498.1|Name=mRNA_L-elsbetiae_contig1667.4498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=252bp
AAVAGGNGDAGLLGVHAREGGGSGGGSGGGGGGSSGRTLALVRRFAVCTE
VVILGPASPRSAKVVAQATTPAPPGSAPLASAPASLASAPAPSVSAPTSS
APPASASALTSSAPSASASASAPTPPAPSAAVPTSSARWARSDGSSAAAS
SKNKPRCSPPQGPPKEAVPDTGRITPSEVVRLVDGVRVLLRSYLVVDVAD
MSVLPRHDGNVGSAGRVTTVGAKGTAGESSGSSCEAERHRDDRKCHAKAD
GA
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mRNA from alignment at L-elsbetiae_contig1667:21653..22410+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1667.4498.1 ID=mRNA_L-elsbetiae_contig1667.4498.1|Name=mRNA_L-elsbetiae_contig1667.4498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=758bp|location=Sequence derived from alignment at L-elsbetiae_contig1667:21653..22410+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGTTGCAGGTGGGAACGGCGACGCGGGTCTCCTCGGTGTTCACGC
TCGAGAGGGCGGTGGCAGTGGCGGTGGCAGCGGCGGTGGCGGTGGCGGTA
GCAGCGGCCGCACCCTTGCGCTCGTCCGGAGGTTCGCCGTCTGCACGGAG
GTCGTCATTCTTGGCCCGGCATCGCCAAGATCTGCCAAGGTCGTAGCACA
AGCAACCACACCAGCCCCACCAGGATCAGCCCCATTAGCATCAGCACCGG
CCTCATTGGCATCAGCACCAGCCCCGTCAGTATCGGCACCAACGTCTTCG
GCCCCACCAGCATCAGCATCAGCGCTAACGTCATCAGCCCCATCAGCATC
AGCATCAGCATCAGCACCAACGCCACCAGCCCCATCAGCAGCAGTGCCGA
CATCATCAGCGAGATGGGCAAGGTCTGATGGGAGCAGCGCTGCGGCCTCG
AGTAAGAATAAGCCTAGGTGCTCACCGCCGCAGGGCCCGCCGAAGGAGGC
CGTCCCGGACACTGGCCGTATCACCCCGTCGGAAGTGGTGAGGCTAGTCG
ACGGCGTCAGAGTTTTGCTCCGGAGCTACCTCGTGGTGGATGTGGCCGAC
ATGTCGGTGCTGCCGAGACACGACGGCAATGTCGGCAGCGCTGGGAGAGT
TACAACAGTCGGCGCAAAGGGGACTGCCGGCGAAAGCAGCGGCAGCAGCT
GCGAGGCAGAGCGACACCGCGACGACCGCAAATGCCACGCCAAAGCCGAT
GGCGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1667:21653..22410+

>mRNA_L-elsbetiae_contig1667.4498.1 ID=mRNA_L-elsbetiae_contig1667.4498.1|Name=mRNA_L-elsbetiae_contig1667.4498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1512bp|location=Sequence derived from alignment at L-elsbetiae_contig1667:21653..22410+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGTTGCAGGTGGGAACGGCGACGCGGGTCTCCTCGGTGTTCACGC
TCGAGAGGGCGGTGGCAGTGGCGGTGGCAGCGGCGGTGGCGGTGGCGGTA
GCAGCGGCCGCACCCTTGCGCTCGTCCGGAGGTTCGCCGTCTGCACGGAG
GTCGTCATTCTTGGCCCGGCATCGCCAAGATCTGCCAAGGTCGTAGCACA
AGCAACCACACCAGCCCCACCAGGATCAGCCCCATTAGCATCAGCACCGG
CCTCATTGGCATCAGCACCAGCCCCGTCAGTATCGGCACCAACGTCTTCG
GCCCCACCAGCATCAGCATCAGCGCTAACGTCATCAGCCCCATCAGCATC
AGCATCAGCATCAGCACCAACGCCACCAGCCCCATCAGCAGCAGTGCCGA
CATCATCAGCGAGATGGGCAAGGTCTGATGGGAGCAGCGCTGCGGCCTCG
AGTAAGAATAAGCCTAGGTGCTCACCGCCGCAGGGCCCGCCGAAGGAGGC
CGTCCCGGACACTGGCCGTATCACCCCGTCGGAAGTGGTGAGGCTAGTCG
ACGGCGTCAGAGTTTTGCTCCGGAGCTACCTCGTGGTGGATGTGGCCGAC
ATGTCGGTGCTGCCGAGACACGACGGCAATGTCGGCAGCGCTGGGAGAGT
TACAACAGTCGGCGCAAAGGGGACTGCCGGCGAAAGCAGCGGCAGCAGCT
GCGAGGCAGAGCGACACCGCGACGACCGCAAATGCCACGCCAAAGCCGAT
GGCGCGGCGGCGGTTGCAGGTGGGAACGGCGACGCGGGTCTCCTCGGTGT
TCACGCTCGAGAGGGCGGTGGCAGTGGCGGTGGCAGCGGCGGTGGCGGTG
GCGGTAGCAGCGGCCGCACCCTTGCGCTCGTCCGGAGGTTCGCCGTCTGC
ACGGAGGTCGTCATTCTTGGCCCGGCATCGCCAAGATCTGCCAAGGTCGT
AGCACAAGCAACCACACCAGCCCCACCAGGATCAGCCCCATTAGCATCAG
CACCGGCCTCATTGGCATCAGCACCAGCCCCGTCAGTATCGGCACCAACG
TCTTCGGCCCCACCAGCATCAGCATCAGCGCTAACGTCATCAGCCCCATC
AGCATCAGCATCAGCATCAGCACCAACGCCACCAGCCCCATCAGCAGCAG
TGCCGACATCATCAGCGAGATGGGCAAGGTCTGATGGGAGCAGCGCTGCG
GCCTCGAGTAAGAATAAGCCTAGGTGCTCACCGCCGCAGGGCCCGCCGAA
GGAGGCCGTCCCGGACACTGGCCGTATCACCCCGTCGGAAGTGGTGAGGC
TAGTCGACGGCGTCAGAGTTTTGCTCCGGAGCTACCTCGTGGTGGATGTG
GCCGACATGTCGGTGCTGCCGAGACACGACGGCAATGTCGGCAGCGCTGG
GAGAGTTACAACAGTCGGCGCAAAGGGGACTGCCGGCGAAAGCAGCGGCA
GCAGCTGCGAGGCAGAGCGACACCGCGACGACCGCAAATGCCACGCCAAA
GCCGATGGCGCG
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