mRNA_L-elsbetiae_contig16661.4494.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16661.4494.1
Unique NamemRNA_L-elsbetiae_contig16661.4494.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16661.4494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16661contigL-elsbetiae_contig16661:377..1756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.1004071-CDS-L-elsbetiae_contig16661:376..4841622815692.1004071-CDS-L-elsbetiae_contig16661:376..484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16661 377..484 -
1691683041.3735611-CDS-L-elsbetiae_contig16661:376..4841691683041.3735611-CDS-L-elsbetiae_contig16661:376..484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16661 377..484 -
1622815692.110343-CDS-L-elsbetiae_contig16661:1582..17561622815692.110343-CDS-L-elsbetiae_contig16661:1582..1756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16661 1583..1756 -
1691683041.389039-CDS-L-elsbetiae_contig16661:1582..17561691683041.389039-CDS-L-elsbetiae_contig16661:1582..1756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16661 1583..1756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16661.4494.1prot_L-elsbetiae_contig16661.4494.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16661 377..1756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16661.4494.1

>prot_L-elsbetiae_contig16661.4494.1 ID=prot_L-elsbetiae_contig16661.4494.1|Name=mRNA_L-elsbetiae_contig16661.4494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
YIDTRIKERPPRLDGRGGQNVFDMQTGCENRTSRRETRSSSEGVFHDYED
GVLYRILTCYAERRAEKQRSPRKKRVRRTLHDDSSARRYQERN*
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mRNA from alignment at L-elsbetiae_contig16661:377..1756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16661.4494.1 ID=mRNA_L-elsbetiae_contig16661.4494.1|Name=mRNA_L-elsbetiae_contig16661.4494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1380bp|location=Sequence derived from alignment at L-elsbetiae_contig16661:377..1756- (Laminarionema elsbetiae ELsaHSoW15)
TATATAGATACTAGGATTAAAGAACGGCCCCCCCGCCTTGACGGGCGGGG
GGGCCAGAATGTATTTGACATGCAGACCGGATGTGAAAATCGCACAAGCC
GCCGGGAGACGAGATCGTCGTCGGAAGGAGTGTTCCACGACTACGAGGAC
GGCGTATTGTATCGAATATTGACGGTAGCGAAATGTTTGTTGCTGTGGTG
CGGGTGGTGCGTGCCAAAAAGTATTGAATACGCAGCGGAGTCGCCGCAGG
CACGAATGTGAGAAGTGTGAGTGGTGCATGTAGATCAACCGACATCCGTG
TGAACGGCTCCGGCGTGATGGAAATTTATCTTCAGCCAGGTTACAGTAGC
TACGAGTCCACCAATGTTATCCTATCGCGAAGAGATACAAAAACGCTGGA
AATCGAGGTACTTGCGAAAAAAGTTCGGAGGTACATAATATCTAGACTGG
TGCATGTAGAGTCAACCGATATCCGTGTGAACGGCTCCGGCGTTATGGAA
ATTTTTCTTCGGCCATGTTACTCTAGCTAAGATTGTACCCAATGTTATCC
TATCGCGAAGAGATACAAAACCGCTGGAAACCGAGGTACTTGCGAAAAAA
GTTCGAAGGTACATATCTAGACTATATCGAACATGTTGGGAAGCTCATGT
ACATATAGAAAGAAAAGACGATGGTTGATCCCAGGAGAAAGACGCGGCAA
TGAAATAGTAGATACACGACTGCAATTTGAATCTAATCACCAGCACGAGG
CAGCGTTTAGAAAGGAAAGAAAGCGAAATCCCTCGTTTAGTGTTTTATGC
TGAGAGAAGTGCAGAAAAAGCACCAAAGGTAGAGAAAGCAGCGTGTACCA
CGAACGTCGCAAGAAAAATAACTAAAGCAAATCCATGAAGCAAGGGACAG
AGATGTGGAAAGAGTCACAGCGCAGGCGGTACTCGGGCGGTACAACGGTA
CGCGCATGTGAACGATTCTATGGAAGAATCCTGAGGCATTGTATTTCAGC
TATTGCTGTATATACGAGTCTCCGAATGTATCCTACCGCGAAAACATATG
AAACGCTGGAAATCGGAATACTTGCGGGAAACGTTCCAAGCTATATCCAA
CAGATGTTGAGAAGCACATCTACATGAGAAGAAAAGACGATGGGTGGTCC
CGCAACAAAGAAACGCATCAATGAAACCCTATAGATAGAACACGGATATC
AACCGGAATCCAATCTGTTGACGAGCACGAGGGAGCATTCGGAAAGAAAA
TATTGCGAGATCCATCGTTTAGTGTTATGCCGAGAGAAGGGCAGAAAAAC
AACGAAGCCCGAGAAAGAAGCGTGTACGACGAACGTTGCATGACGATTCG
TCGGCACGTCGTTACCAGGAACGTAACTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16661:377..1756-

>mRNA_L-elsbetiae_contig16661.4494.1 ID=mRNA_L-elsbetiae_contig16661.4494.1|Name=mRNA_L-elsbetiae_contig16661.4494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig16661:377..1756- (Laminarionema elsbetiae ELsaHSoW15)
TATATAGATACTAGGATTAAAGAACGGCCCCCCCGCCTTGACGGGCGGGG
GGGCCAGAATGTATTTGACATGCAGACCGGATGTGAAAATCGCACAAGCC
GCCGGGAGACGAGATCGTCGTCGGAAGGAGTGTTCCACGACTACGAGGAC
GGCGTATTGTATCGAATATTGACGTATATAGATACTAGGATTAAAGAACG
GCCCCCCCGCCTTGACGGGCGGGGGGGCCAGAATGTATTTGACATGCAGA
CCGGATGTGAAAATCGCACAAGCCGCCGGGAGACGAGATCGTCGTCGGAA
GGAGTGTTCCACGACTACGAGGACGGCGTATTGTATCGAATATTGACGTG
TTATGCCGAGAGAAGGGCAGAAAAACAACGAAGCCCGAGAAAGAAGCGTG
TACGACGAACGTTGCATGACGATTCGTCGGCACGTCGTTACCAGGAACGT
AACTAATGTTATGCCGAGAGAAGGGCAGAAAAACAACGAAGCCCGAGAAA
GAAGCGTGTACGACGAACGTTGCATGACGATTCGTCGGCACGTCGTTACC
AGGAACGTAACTAA
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