mRNA_L-elsbetiae_contig16657.4491.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16657.4491.1
Unique NamemRNA_L-elsbetiae_contig16657.4491.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16657.4491.1 vs. uniprot
Match: D7G7A9_ECTSI (Cation efflux protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A9_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 8.950e-26
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 KFFAGIIGHSSAMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHGR 153
            K FAGI+GHSSAMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHGR
Sbjct:  236 KLFAGILGHSSAMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHGR 286
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BLAST of mRNA_L-elsbetiae_contig16657.4491.1 vs. uniprot
Match: A0A7S2BXF3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BXF3_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.360e-25
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 KFFAGIIGHSSAMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHGR 153
            K  AG++G+S+AMIADAGHSLSDLLSD VTLWAVRL+RLPPDEDHPYGHGR
Sbjct:   23 KLVAGVVGNSAAMIADAGHSLSDLLSDGVTLWAVRLARLPPDEDHPYGHGR 73
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BLAST of mRNA_L-elsbetiae_contig16657.4491.1 vs. uniprot
Match: A0A836CMV4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMV4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.900e-23
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 KFFAGIIGHSSAMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHGR 153
            K FAGI+G S+A+++DAGHS+SDLLSDAVTLWAVR+ RLPPD DHPYGHGR
Sbjct:   95 KLFAGIVGRSAALVSDAGHSMSDLLSDAVTLWAVRVGRLPPDADHPYGHGR 145
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BLAST of mRNA_L-elsbetiae_contig16657.4491.1 vs. uniprot
Match: A0A7S2RL19_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL19_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.060e-21
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 KFFAGIIGHSSAMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHGR 153
            K  AG+ G S+AMIADAGHSLSDLLSD VTLWAVRLSRLPPD DHPYGHGR
Sbjct:   24 KLAAGVFGQSAAMIADAGHSLSDLLSDGVTLWAVRLSRLPPDSDHPYGHGR 74
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BLAST of mRNA_L-elsbetiae_contig16657.4491.1 vs. uniprot
Match: A0A7S2RMB7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMB7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.500e-21
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 KFFAGIIGHSSAMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHGR 153
            K  AG+ G S+AMIADAGHSLSDLLSD VTLWAVRLSRLPPD DHPYGHGR
Sbjct:  185 KLAAGVFGQSAAMIADAGHSLSDLLSDGVTLWAVRLSRLPPDSDHPYGHGR 235
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BLAST of mRNA_L-elsbetiae_contig16657.4491.1 vs. uniprot
Match: A0A7S2V756_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V756_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.740e-21
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 KFFAGIIGHSSAMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHGR 153
            K FAGI+G SSAMIADAGHSLSDL+SD VTLWAVR++RLP D DHPYGHGR
Sbjct:   27 KLFAGIVGRSSAMIADAGHSLSDLVSDGVTLWAVRVARLPADADHPYGHGR 77
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BLAST of mRNA_L-elsbetiae_contig16657.4491.1 vs. uniprot
Match: A0A7S4DFL3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFL3_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 2.310e-20
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 KFFAGIIGHSSAMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHGR 153
            K  AGI G SSAM+ADAGHSLSDL+SD VTL++VRL+RLPPDEDHPYGHGR
Sbjct:  133 KLVAGIAGRSSAMVADAGHSLSDLISDGVTLYSVRLARLPPDEDHPYGHGR 183
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BLAST of mRNA_L-elsbetiae_contig16657.4491.1 vs. uniprot
Match: A0A4D9DA93_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA93_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.820e-20
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 KFFAGIIGHSSAMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHGR 153
            K  AG++G S+AM+ADAGH+LSDL+SD VTLWAVR+S LPPD+DHPYGHGR
Sbjct:  158 KATAGVLGRSAAMVADAGHTLSDLVSDMVTLWAVRMSALPPDDDHPYGHGR 208
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BLAST of mRNA_L-elsbetiae_contig16657.4491.1 vs. uniprot
Match: A0A8J6C7H1_DIALT (ZT_dimer domain-containing protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C7H1_DIALT)

HSP 1 Score: 89.7 bits (221), Expect = 1.190e-19
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 KFFAGIIGHSSAMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHGR 153
            K  AG+ G S+AM+ADAGHS SDL+SDA+T W+VR+ RLPPDEDHPYGHGR
Sbjct:  145 KLAAGVYGRSAAMVADAGHSFSDLVSDAITFWSVRMGRLPPDEDHPYGHGR 195
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BLAST of mRNA_L-elsbetiae_contig16657.4491.1 vs. uniprot
Match: W7U980_9STRA (Cation efflux protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U980_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.190e-19
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 KFFAGIIGHSSAMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHGR 153
            K  AG++G S+AM+ADAGH+LSDL+SD VTLWAVR+S LPPD+DHPYGHGR
Sbjct:  292 KATAGVLGRSAAMVADAGHTLSDLVSDMVTLWAVRMSALPPDDDHPYGHGR 342
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16657.4491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7A9_ECTSI8.950e-2696.08Cation efflux protein n=2 Tax=Ectocarpus siliculos... [more]
A0A7S2BXF3_9STRA3.360e-2584.31Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A836CMV4_9STRA3.900e-2378.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RL19_9STRA1.060e-2184.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2RMB7_9STRA1.500e-2184.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2V756_9STRA2.740e-2182.35Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4DFL3_HETAK2.310e-2080.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9DA93_9STRA5.820e-2074.51Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8J6C7H1_DIALT1.190e-1972.55ZT_dimer domain-containing protein n=3 Tax=Diacron... [more]
W7U980_9STRA1.190e-1974.51Cation efflux protein n=1 Tax=Nannochloropsis gadi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16657contigL-elsbetiae_contig16657:416..571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue4.4e-21
Seed eggNOG ortholog2880.D7G7A9
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.cation transmembrane transporter activity
EggNOG OGsCOG0053@1,KOG1485@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815691.7723503-CDS-L-elsbetiae_contig16657:415..5711622815691.7723503-CDS-L-elsbetiae_contig16657:415..571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16657 416..571 -
1691683041.1099074-CDS-L-elsbetiae_contig16657:415..5711691683041.1099074-CDS-L-elsbetiae_contig16657:415..571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16657 416..571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16657.4491.1prot_L-elsbetiae_contig16657.4491.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16657 416..571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16657.4491.1

>prot_L-elsbetiae_contig16657.4491.1 ID=prot_L-elsbetiae_contig16657.4491.1|Name=mRNA_L-elsbetiae_contig16657.4491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
KFFAGIIGHSSAMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHG
R*
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mRNA from alignment at L-elsbetiae_contig16657:416..571-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16657.4491.1 ID=mRNA_L-elsbetiae_contig16657.4491.1|Name=mRNA_L-elsbetiae_contig16657.4491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig16657:416..571- (Laminarionema elsbetiae ELsaHSoW15)
AAGTTCTTCGCGGGCATCATCGGGCACTCGTCGGCGATGATCGCGGACGC
CGGGCACTCCCTGTCCGACCTCCTCTCGGACGCCGTCACCCTGTGGGCCG
TGCGCCTGAGCCGGTTACCCCCGGACGAAGACCACCCTTACGGCCACGGG
AGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16657:416..571-

>mRNA_L-elsbetiae_contig16657.4491.1 ID=mRNA_L-elsbetiae_contig16657.4491.1|Name=mRNA_L-elsbetiae_contig16657.4491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig16657:416..571- (Laminarionema elsbetiae ELsaHSoW15)
AAGTTCTTCGCGGGCATCATCGGGCACTCGTCGGCGATGATCGCGGACGC
CGGGCACTCCCTGTCCGACCTCCTCTCGGACGCCGTCACCCTGTGGGCCG
TGCGCCTGAGCCGGTTACCCCCGGACGAAGACCACCCTTACGGCCACGGG
AGGTGAAAGTTCTTCGCGGGCATCATCGGGCACTCGTCGGCGATGATCGC
GGACGCCGGGCACTCCCTGTCCGACCTCCTCTCGGACGCCGTCACCCTGT
GGGCCGTGCGCCTGAGCCGGTTACCCCCGGACGAAGACCACCCTTACGGC
CACGGGAGGTGA
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