mRNA_L-elsbetiae_contig16654.4489.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16654.4489.1
Unique NamemRNA_L-elsbetiae_contig16654.4489.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16654.4489.1 vs. uniprot
Match: A0A6H5L351_9PHAE (DNMT1-RFD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L351_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.280e-32
Identity = 70/107 (65.42%), Postives = 76/107 (71.03%), Query Frame = -2 
Query:   60 FGGAPETTLPGLRDSKELIQATPHGFPELLRLVAIRREGVLRRVETRHMAAARGFAGLGFQREGARGLDLRVLQARVLDPLGEAMRILRHVLKSEEAKPFAAAPSDE 380
            FGGAPETTLPGLRDS+EL+QA+PHGFPELLRLVAI REG+LRRVETR MAA                          LDPLGE MRILRH+LKSEEAKPFA  PSD+
Sbjct: 1184 FGGAPETTLPGLRDSRELVQASPHGFPELLRLVAIHREGLLRRVETRRMAAXXXXXXXXXXXXXXXXXXXXXXXXXXLDPLGEVMRILRHLLKSEEAKPFADVPSDD 1290
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BLAST of mRNA_L-elsbetiae_contig16654.4489.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.690e-9
Identity = 38/70 (54.29%), Postives = 40/70 (57.14%), Query Frame = -2 
Query:   60 EGVLRRVETRHMAAARGFAGLGFQREGARGLDLRVLQARVLDPLGEAMRILRHVLKSEEAKPFAAAPSDE 269
            EGVLRRVETR MAA                          LDPLGE MRILRH+LKSEEAKPFA  PSD+
Sbjct:  763 EGVLRRVETRRMAAXXXXXXXXXXXXXXXXXXXXXXXXXXLDPLGEVMRILRHLLKSEEAKPFADVPSDD 832
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16654.4489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L351_9PHAE1.280e-3265.42DNMT1-RFD domain-containing protein n=1 Tax=Ectoca... [more]
D7G6R7_ECTSI1.690e-954.29Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16654contigL-elsbetiae_contig16654:1793..2249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size458
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815691.6282291-CDS-L-elsbetiae_contig16654:1792..22481622815691.6282291-CDS-L-elsbetiae_contig16654:1792..2248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16654 1793..2248 +
1691683041.0527387-CDS-L-elsbetiae_contig16654:1792..22481691683041.0527387-CDS-L-elsbetiae_contig16654:1792..2248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16654 1793..2248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16654.4489.1prot_L-elsbetiae_contig16654.4489.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16654 1793..2248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16654.4489.1

>prot_L-elsbetiae_contig16654.4489.1 ID=prot_L-elsbetiae_contig16654.4489.1|Name=mRNA_L-elsbetiae_contig16654.4489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
TPTSSSASASASASGSGSTSSSEGAAANGFASSDLSTCRKMRIASPSGSR
TLACSTLRSRPRAPSRWNPSPANPLAAAMWRVSTRRSTPSRRIATSLSSS
GNPCGVAWISSFESRSPGRVVSGAPPNSSSSKTDTAAAPASPFAPPGPSL
PP
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mRNA from alignment at L-elsbetiae_contig16654:1793..2249+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16654.4489.1 ID=mRNA_L-elsbetiae_contig16654.4489.1|Name=mRNA_L-elsbetiae_contig16654.4489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=457bp|location=Sequence derived from alignment at L-elsbetiae_contig16654:1793..2249+ (Laminarionema elsbetiae ELsaHSoW15)
ACCCCGACCTCTTCGTCGGCCTCCGCTTCCGCCTCCGCTTCCGGCTCCGG
GTCGACGTCTTCATCCGAGGGAGCTGCGGCGAACGGCTTCGCCTCCTCGG
ACTTGAGCACGTGCCGCAAGATGCGCATCGCCTCCCCGAGCGGGTCCAGG
ACCCTCGCCTGCAGCACCCTCAGGTCGAGGCCCCGGGCACCCTCGCGCTG
GAACCCGAGCCCGGCAAACCCCCTCGCCGCGGCCATGTGGCGCGTCTCCA
CGCGGCGGAGCACCCCCTCCCGACGAATCGCCACCAGCCTCAGCAGCTCC
GGAAACCCGTGCGGGGTTGCCTGGATCAGCTCCTTCGAGTCGCGGAGCCC
CGGGAGGGTCGTCTCGGGGGCCCCGCCGAACTCCTCCTCGTCTAAGACCG
ACACCGCCGCCGCCCCCGCCTCACCGTTCGCCCCCCCCGGGCCCTCGTTG
CCTCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16654:1793..2249+

>mRNA_L-elsbetiae_contig16654.4489.1 ID=mRNA_L-elsbetiae_contig16654.4489.1|Name=mRNA_L-elsbetiae_contig16654.4489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig16654:1793..2249+ (Laminarionema elsbetiae ELsaHSoW15)
ACCCCGACCTCTTCGTCGGCCTCCGCTTCCGCCTCCGCTTCCGGCTCCGG
GTCGACGTCTTCATCCGAGGGAGCTGCGGCGAACGGCTTCGCCTCCTCGG
ACTTGAGCACGTGCCGCAAGATGCGCATCGCCTCCCCGAGCGGGTCCAGG
ACCCTCGCCTGCAGCACCCTCAGGTCGAGGCCCCGGGCACCCTCGCGCTG
GAACCCGAGCCCGGCAAACCCCCTCGCCGCGGCCATGTGGCGCGTCTCCA
CGCGGCGGAGCACCCCCTCCCGACGAATCGCCACCAGCCTCAGCAGCTCC
GGAAACCCGTGCGGGGTTGCCTGGATCAGCTCCTTCGAGTCGCGGAGCCC
CGGGAGGGTCGTCTCGGGGGCCCCGCCGAACTCCTCCTCGTCTAAGACCG
ACACCGCCGCCGCCCCCGCCTCACCGTTCGCCCCCCCCGGGCCCTCGTTG
CCTCCCACCCCGACCTCTTCGTCGGCCTCCGCTTCCGCCTCCGCTTCCGG
CTCCGGGTCGACGTCTTCATCCGAGGGAGCTGCGGCGAACGGCTTCGCCT
CCTCGGACTTGAGCACGTGCCGCAAGATGCGCATCGCCTCCCCGAGCGGG
TCCAGGACCCTCGCCTGCAGCACCCTCAGGTCGAGGCCCCGGGCACCCTC
GCGCTGGAACCCGAGCCCGGCAAACCCCCTCGCCGCGGCCATGTGGCGCG
TCTCCACGCGGCGGAGCACCCCCTCCCGACGAATCGCCACCAGCCTCAGC
AGCTCCGGAAACCCGTGCGGGGTTGCCTGGATCAGCTCCTTCGAGTCGCG
GAGCCCCGGGAGGGTCGTCTCGGGGGCCCCGCCGAACTCCTCCTCGTCTA
AGACCGACACCGCCGCCGCCCCCGCCTCACCGTTCGCCCCCCCCGGGCCC
TCGTTGCCTCCC
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