mRNA_L-elsbetiae_contig16654.4488.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16654.4488.1
Unique NamemRNA_L-elsbetiae_contig16654.4488.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16654.4488.1 vs. uniprot
Match: A0A6H5L351_9PHAE (DNMT1-RFD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L351_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.920e-53
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 1 
Query:    1 EKARAKRPLDLGTILRRAENGWYDLEPGAEPPVASNSFGAGHAGVAYDVELMQQGWLEARGADSAIFGQARGVVDEFLALYETHVLNPLIELDKDIKG 294
            EKA  KRPLDLGTILRRAENGWYDLEPGAEPPV SNSFGAGHAGVAYDVELMQQGWLEA+GADSAIF QARGVVDEFLALYETHVLNPL+ELDKDI+G
Sbjct: 1323 EKAEVKRPLDLGTILRRAENGWYDLEPGAEPPVESNSFGAGHAGVAYDVELMQQGWLEAKGADSAIFEQARGVVDEFLALYETHVLNPLVELDKDIRG 1420
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BLAST of mRNA_L-elsbetiae_contig16654.4488.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 4.900e-53
Identity = 94/118 (79.66%), Postives = 100/118 (84.75%), Query Frame = 1 
Query:    4 KARAKRPLDLGTILRRAENGWYDLEPGAEPPVASNSFGAGHAGVAYDVELMQQGWLEARGADSAIFGQARGVVDEFLALYETHVLNPLIELDKDIKGEGK--------GEGGVQGARL 333
            KA  KRPLDLGTILRRAENGWYDLEPGAEPPV SNSFGAGHAGVAYDVELMQQGWLEA+GADSAIF QARGVVDEFLALYETHVLNPL+ELDKDI+G           G GG++  R+
Sbjct:  863 KAEVKRPLDLGTILRRAENGWYDLEPGAEPPVESNSFGAGHAGVAYDVELMQQGWLEAKGADSAIFEQARGVVDEFLALYETHVLNPLVELDKDIRGSAAXXXXXXXXGRGGLEEGRV 980
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16654.4488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L351_9PHAE1.920e-5392.86DNMT1-RFD domain-containing protein n=1 Tax=Ectoca... [more]
D7G6R7_ECTSI4.900e-5379.66Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16654contigL-elsbetiae_contig16654:597..1716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.9
Seed ortholog evalue6.7e-46
Seed eggNOG ortholog2880.D7G6R7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Exons3
Model size346
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16654.4488.1prot_L-elsbetiae_contig16654.4488.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16654 597..1716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815691.6679559-CDS-L-elsbetiae_contig16654:596..7341622815691.6679559-CDS-L-elsbetiae_contig16654:596..734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16654 597..734 -
1691683041.0629396-CDS-L-elsbetiae_contig16654:596..7341691683041.0629396-CDS-L-elsbetiae_contig16654:596..734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16654 597..734 -
1622815691.6833746-CDS-L-elsbetiae_contig16654:1201..13181622815691.6833746-CDS-L-elsbetiae_contig16654:1201..1318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16654 1202..1318 -
1691683041.073268-CDS-L-elsbetiae_contig16654:1201..13181691683041.073268-CDS-L-elsbetiae_contig16654:1201..1318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16654 1202..1318 -
1622815691.6961813-CDS-L-elsbetiae_contig16654:1626..17161622815691.6961813-CDS-L-elsbetiae_contig16654:1626..1716Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16654 1627..1716 -
1691683041.0812874-CDS-L-elsbetiae_contig16654:1626..17161691683041.0812874-CDS-L-elsbetiae_contig16654:1626..1716Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16654 1627..1716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16654.4488.1

>prot_L-elsbetiae_contig16654.4488.1 ID=prot_L-elsbetiae_contig16654.4488.1|Name=mRNA_L-elsbetiae_contig16654.4488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
EKARAKRPLDLGTILRRAENGWYDLEPGAEPPVASNSFGAGHAGVAYDVE
LMQQGWLEARGADSAIFGQARGVVDEFLALYETHVLNPLIELDKDIKGEG
KGEGGVQGARLEKGG
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mRNA from alignment at L-elsbetiae_contig16654:597..1716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16654.4488.1 ID=mRNA_L-elsbetiae_contig16654.4488.1|Name=mRNA_L-elsbetiae_contig16654.4488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1120bp|location=Sequence derived from alignment at L-elsbetiae_contig16654:597..1716- (Laminarionema elsbetiae ELsaHSoW15)
GAGAAAGCACGGGCGAAGAGACCGCTGGACCTGGGGACCATTCTCCGCCG
CGCGGAGAACGGGTGGTATGACCTAGAGCCGGGCGCTGAGGTGAGCCAAC
AGTCATCAATCAACAATCAACACGCACGCACGCACGCACGCACTCGAAAG
TTTCGGGTCGTCTCTGTCGTCGTCGAGGTAAAATCTTGTTGTCGTCACCG
CCGCCGCCGCTGCTGCTGCTACTGTTTTTTTTTGCCGTTGTTCTTGCTGT
CCCCGCTGTTGTTGGCTCTGCTGCTGCTGCTGCTGCTGCTGCTGCCTCTT
CTGTCTATCATGCCACCATCTCGTTGTTGACCCTTCCCTGCCCTTCCCTT
CTACACCCCCTTCCCGTTTTACCCCCACCCTTTATTTCATCCTTTCAGCC
TCCGGTGGCGTCGAACAGCTTTGGTGCGGGTCACGCGGGCGTCGCGTACG
ACGTGGAGCTGATGCAACAGGGCTGGTTAGAGGCGAGGGGCGCAGACAGC
GCCATCTTCGGACAGGCAAGCAAGCAAGATGCCGTGTCCTCCGCGGCACG
AAGCACGAATGTACATGTATTACGGTATGCTATAACATGTAGAAGTAACA
ATGTTTTTCTTAAGGGTGCTCACACGTTTAGCAGCGCTCGGACGAGAGTC
CCAGCAAACGTAGAAGCAGCGGACCATTTTTGGTCGCTGCGTAGTAACCG
CAGCAGTGGCATATTTATGACATTTAGCTGCCACCCCGCTCTGGCCGACT
CCCCGTGGTGCCCCTCTGATGTAGAAAAAGTGAAAGTTCCTATGGAAAGG
CAGAACGAACGCGTCACGGGGGGAGATTTTCAGACATGCCCATAAACCCT
GTCGGCCTTGAAGTTGGTTTTGGGAGAGCCCCCACACCAGCCCCCCTCTC
GTCTTTTCTTCCCTCTCCTTTTTTGCCAGGCCCGCCCGGCGGCCCCCCCC
CCCCCCCCCCGCACTTTATTTTATCTTCGCAGGCGCGGGGGGTGGTAGAC
GAGTTCCTGGCTCTTTACGAGACCCACGTGCTGAACCCCTTAATAGAGTT
AGACAAAGATATCAAAGGCGAGGGCAAAGGCGAAGGAGGAGTCCAAGGGG
CCCGTTTGGAGAAGGGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16654:597..1716-

>mRNA_L-elsbetiae_contig16654.4488.1 ID=mRNA_L-elsbetiae_contig16654.4488.1|Name=mRNA_L-elsbetiae_contig16654.4488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig16654:597..1716- (Laminarionema elsbetiae ELsaHSoW15)
GAGAAAGCACGGGCGAAGAGACCGCTGGACCTGGGGACCATTCTCCGCCG
CGCGGAGAACGGGTGGTATGACCTAGAGCCGGGCGCTGAGGAGAAAGCAC
GGGCGAAGAGACCGCTGGACCTGGGGACCATTCTCCGCCGCGCGGAGAAC
GGGTGGTATGACCTAGAGCCGGGCGCTGAGCCTCCGGTGGCGTCGAACAG
CTTTGGTGCGGGTCACGCGGGCGTCGCGTACGACGTGGAGCTGATGCAAC
AGGGCTGGTTAGAGGCGAGGGGCGCAGACAGCGCCATCTTCGGACAGCCT
CCGGTGGCGTCGAACAGCTTTGGTGCGGGTCACGCGGGCGTCGCGTACGA
CGTGGAGCTGATGCAACAGGGCTGGTTAGAGGCGAGGGGCGCAGACAGCG
CCATCTTCGGACAGGCGCGGGGGGTGGTAGACGAGTTCCTGGCTCTTTAC
GAGACCCACGTGCTGAACCCCTTAATAGAGTTAGACAAAGATATCAAAGG
CGAGGGCAAAGGCGAAGGAGGAGTCCAAGGGGCCCGTTTGGAGAAGGGGG
GGGCGCGGGGGGTGGTAGACGAGTTCCTGGCTCTTTACGAGACCCACGTG
CTGAACCCCTTAATAGAGTTAGACAAAGATATCAAAGGCGAGGGCAAAGG
CGAAGGAGGAGTCCAAGGGGCCCGTTTGGAGAAGGGGGGG
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