mRNA_L-elsbetiae_contig1665.4486.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1665.4486.1
Unique NamemRNA_L-elsbetiae_contig1665.4486.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1665.4486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1665contigL-elsbetiae_contig1665:10805..11161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size342
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815691.5193892-UTR-L-elsbetiae_contig1665:10804..108191622815691.5193892-UTR-L-elsbetiae_contig1665:10804..10819Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1665 10805..10819 +
1691683040.981681-UTR-L-elsbetiae_contig1665:10804..108191691683040.981681-UTR-L-elsbetiae_contig1665:10804..10819Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1665 10805..10819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815691.5323732-CDS-L-elsbetiae_contig1665:10819..111611622815691.5323732-CDS-L-elsbetiae_contig1665:10819..11161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1665 10820..11161 +
1691683040.9985466-CDS-L-elsbetiae_contig1665:10819..111611691683040.9985466-CDS-L-elsbetiae_contig1665:10819..11161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1665 10820..11161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1665.4486.1prot_L-elsbetiae_contig1665.4486.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1665 10820..11161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1665.4486.1

>prot_L-elsbetiae_contig1665.4486.1 ID=prot_L-elsbetiae_contig1665.4486.1|Name=mRNA_L-elsbetiae_contig1665.4486.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MYRVFFWGGTFSWRGDHGGGRAQKAVLYIRVLRRVEQNCATCNRLKCNIC
FQQIMYVRRGGNHTYREKVCIRRKLHKFTNCDSSGTLSATQSEAPHCEIK
QILNIRILVPDQH*
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mRNA from alignment at L-elsbetiae_contig1665:10805..11161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1665.4486.1 ID=mRNA_L-elsbetiae_contig1665.4486.1|Name=mRNA_L-elsbetiae_contig1665.4486.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=357bp|location=Sequence derived from alignment at L-elsbetiae_contig1665:10805..11161+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTTCTGTGCTTGTATGTACCGCGTTTTTTTTTGGGGGGGGACGTTCTC
ATGGAGGGGGGATCATGGAGGGGGGCGAGCTCAAAAGGCTGTGCTGTACA
TACGTGTGCTGAGGCGGGTAGAGCAAAACTGTGCAACATGCAATAGATTA
AAATGCAATATTTGTTTTCAACAAATTATGTATGTTCGACGGGGTGGGAA
CCACACGTATCGTGAAAAAGTCTGCATACGCCGCAAACTCCATAAATTCA
CCAATTGCGATTCATCTGGTACTCTGTCAGCCACGCAAAGCGAAGCGCCG
CACTGTGAAATCAAGCAGATCCTCAATATTAGAATATTAGTGCCGGACCA
GCACTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1665:10805..11161+

>mRNA_L-elsbetiae_contig1665.4486.1 ID=mRNA_L-elsbetiae_contig1665.4486.1|Name=mRNA_L-elsbetiae_contig1665.4486.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig1665:10805..11161+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCGCGTTTTTTTTTGGGGGGGGACGTTCTCATGGAGGGGGGATCA
TGGAGGGGGGCGAGCTCAAAAGGCTGTGCTGTACATACGTGTGCTGAGGC
GGGTAGAGCAAAACTGTGCAACATGCAATAGATTAAAATGCAATATTTGT
TTTCAACAAATTATGTATGTTCGACGGGGTGGGAACCACACGTATCGTGA
AAAAGTCTGCATACGCCGCAAACTCCATAAATTCACCAATTGCGATTCAT
CTGGTACTCTGTCAGCCACGCAAAGCGAAGCGCCGCACTGTGAAATCAAG
CAGATCCTCAATATTAGAATATTAGTGCCGGACCAGCACTAAATGTACCG
CGTTTTTTTTTGGGGGGGGACGTTCTCATGGAGGGGGGATCATGGAGGGG
GGCGAGCTCAAAAGGCTGTGCTGTACATACGTGTGCTGAGGCGGGTAGAG
CAAAACTGTGCAACATGCAATAGATTAAAATGCAATATTTGTTTTCAACA
AATTATGTATGTTCGACGGGGTGGGAACCACACGTATCGTGAAAAAGTCT
GCATACGCCGCAAACTCCATAAATTCACCAATTGCGATTCATCTGGTACT
CTGTCAGCCACGCAAAGCGAAGCGCCGCACTGTGAAATCAAGCAGATCCT
CAATATTAGAATATTAGTGCCGGACCAGCACTAA
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