mRNA_L-elsbetiae_contig16642.4485.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16642.4485.1
Unique NamemRNA_L-elsbetiae_contig16642.4485.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16642.4485.1 vs. uniprot
Match: A0A6H5JNL8_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL8_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 1.910e-50
Identity = 79/94 (84.04%), Postives = 86/94 (91.49%), Query Frame = 2
Query:    5 SQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIA 286
            ++IECF DNPGILMYGNMCVVYTTGIWLLLAS+ ELPVSTTHSTIGGIVGMAMTYRG DCVVWYEEA+ FP++ GI+ IVASWVLSPVLS  IA
Sbjct:    3 AKIECFTDNPGILMYGNMCVVYTTGIWLLLASYFELPVSTTHSTIGGIVGMAMTYRGADCVVWYEEADLFPYLKGISAIVASWVLSPVLSAVIA 96          
BLAST of mRNA_L-elsbetiae_contig16642.4485.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 4.220e-50
Identity = 78/95 (82.11%), Postives = 86/95 (90.53%), Query Frame = 2
Query:    2 LSQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIA 286
            ++  ECFEDNPGILMYGNMCVVYTTG WLLLASF ELPVSTTHSTIGGIVGMA+TYRGPDCVVWYE+A+ FP++ GI+ IVASWVLSPVLS  IA
Sbjct:   87 IADTECFEDNPGILMYGNMCVVYTTGFWLLLASFFELPVSTTHSTIGGIVGMAITYRGPDCVVWYEKADLFPYLKGISAIVASWVLSPVLSAVIA 181          
BLAST of mRNA_L-elsbetiae_contig16642.4485.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 1.600e-49
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = 2
Query:    2 LSQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIA 286
            ++ IECFEDNPGILMYGNMCVVYTTGIWLLLASF ELPVSTTHST+GGIVGMAMTYRG DCVVWYEEA+ FP++ G++ IVASW LSP+ S  IA
Sbjct:   86 IADIECFEDNPGILMYGNMCVVYTTGIWLLLASFFELPVSTTHSTVGGIVGMAMTYRGADCVVWYEEADLFPYLKGVSAIVASWALSPLFSAVIA 180          
BLAST of mRNA_L-elsbetiae_contig16642.4485.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.870e-47
Identity = 74/94 (78.72%), Postives = 80/94 (85.11%), Query Frame = 2
Query:    5 SQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIA 286
            + IECF DNPGILMYGNMCVVYT GIWLLLASF ELPVSTTHSTIGGIVGM MTYRG DCVVWYEEA+ FP++ G+  IV SW L PVLSG +A
Sbjct:   88 ADIECFTDNPGILMYGNMCVVYTNGIWLLLASFFELPVSTTHSTIGGIVGMTMTYRGADCVVWYEEADHFPYIKGVFAIVVSWALFPVLSGVVA 181          
BLAST of mRNA_L-elsbetiae_contig16642.4485.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 3.120e-47
Identity = 74/93 (79.57%), Postives = 82/93 (88.17%), Query Frame = 2
Query:    8 QIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIA 286
            Q+ CF DNPGILMYGNMCVVYT+G WLLLASF ELPVSTTH+T+GGIVGMAMTYRG DCVVWYEEAE FP++ G++ IVASW LSPVLS  IA
Sbjct:   96 QVGCFVDNPGILMYGNMCVVYTSGFWLLLASFFELPVSTTHATVGGIVGMAMTYRGADCVVWYEEAEFFPYLKGVSAIVASWALSPVLSAVIA 188          
BLAST of mRNA_L-elsbetiae_contig16642.4485.1 vs. uniprot
Match: D8LJQ4_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ4_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 5.330e-43
Identity = 59/93 (63.44%), Postives = 77/93 (82.80%), Query Frame = 2
Query:    8 QIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIA 286
            ++ECF DNPG+LMYG MCVVYTTG+WLLLAS+L LPVSTTH+TIG ++GM + Y G  CVVW++E++ FP+V G+A I  SWVLSP+ SG ++
Sbjct:   28 KVECFLDNPGVLMYGMMCVVYTTGMWLLLASYLALPVSTTHATIGAMIGMTVVYGGAGCVVWFQESDSFPYVKGVAAIAVSWVLSPIFSGIVS 120          
BLAST of mRNA_L-elsbetiae_contig16642.4485.1 vs. uniprot
Match: D8LJQ6_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ6_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 2.730e-41
Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 2
Query:   11 IECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSG 277
            +ECF DNPGILMYG MCVVYTTG+WLLLAS+LELPVSTTHSTIG I+GMA+ Y G  CVVWY+E++ FP+  G+A I  SWVLSP+ SG
Sbjct:   50 VECFLDNPGILMYGMMCVVYTTGMWLLLASYLELPVSTTHSTIGAIIGMAVAYAGSGCVVWYQESDIFPYFKGVAAIAVSWVLSPIFSG 138          
BLAST of mRNA_L-elsbetiae_contig16642.4485.1 vs. uniprot
Match: D7G5U7_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U7_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 6.450e-41
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 2
Query:    2 LSQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPF 220
            ++ IECF+DNPGILMYGNMCVVYTTGIWLLLASF ELPVSTTHSTIGGIVGMAMTYRG  CVVWYE+ E FP+
Sbjct:  112 IADIECFQDNPGILMYGNMCVVYTTGIWLLLASFFELPVSTTHSTIGGIVGMAMTYRGAGCVVWYEKNELFPY 184          
BLAST of mRNA_L-elsbetiae_contig16642.4485.1 vs. uniprot
Match: A0A7R9T173_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T173_9CHLO)

HSP 1 Score: 130 bits (328), Expect = 2.290e-36
Identity = 50/88 (56.82%), Postives = 72/88 (81.82%), Query Frame = 2
Query:   14 ECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSG 277
            +CF D+PG+LMYG +CV+++  IWL++ASFLE+PVSTTHS +GG++GM M  RG  CVVW  +++ FP++ G+A IV SW+LSP++SG
Sbjct:   16 DCFNDDPGLLMYGCLCVIFSVAIWLVVASFLEMPVSTTHSCVGGMIGMTMVARGSSCVVWSAKSDTFPYIKGVAAIVVSWLLSPIVSG 103          
BLAST of mRNA_L-elsbetiae_contig16642.4485.1 vs. uniprot
Match: D8LJP9_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP9_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.630e-36
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 2
Query:    8 QIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSG 277
            Q+ CF DNPG+LMYG MCV+YTT +WLLLAS+LELPVS T STI  IVGM + Y G  CVVW+ E+E FP   G+  I+  W+LSP+++G
Sbjct:    6 QVSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAG 95          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16642.4485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNL8_9PHAE1.910e-5084.04Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI4.220e-5082.11Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
A0A6H5JNE7_9PHAE1.600e-4980.00Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FZJ7_ECTSI1.870e-4778.72Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FWT9_ECTSI3.120e-4779.57Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJQ4_ECTSI5.330e-4363.44High affinity phosphate transporter n=1 Tax=Ectoca... [more]
D8LJQ6_ECTSI2.730e-4171.91Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7G5U7_ECTSI6.450e-4184.93High affinity phosphate transporter n=1 Tax=Ectoca... [more]
A0A7R9T173_9CHLO2.290e-3656.82Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
D8LJP9_ECTSI2.630e-3660.00High affinity phosphate transporter n=1 Tax=Ectoca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16642contigL-elsbetiae_contig16642:2667..3385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815691.4679492-CDS-L-elsbetiae_contig16642:2666..28921622815691.4679492-CDS-L-elsbetiae_contig16642:2666..2892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16642 2667..2892 +
1691683040.9589806-CDS-L-elsbetiae_contig16642:2666..28921691683040.9589806-CDS-L-elsbetiae_contig16642:2666..2892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16642 2667..2892 +
1622815691.4813647-CDS-L-elsbetiae_contig16642:3321..33831622815691.4813647-CDS-L-elsbetiae_contig16642:3321..3383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16642 3322..3383 +
1691683040.9708934-CDS-L-elsbetiae_contig16642:3321..33831691683040.9708934-CDS-L-elsbetiae_contig16642:3321..3383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16642 3322..3383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16642.4485.1prot_L-elsbetiae_contig16642.4485.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16642 2667..3383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16642.4485.1

>prot_L-elsbetiae_contig16642.4485.1 ID=prot_L-elsbetiae_contig16642.4485.1|Name=mRNA_L-elsbetiae_contig16642.4485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
LVADRVLRGQPGHPDVRQHVCRVHYRDLAPAGVLPRAACVHHPLHHRRHR
RNGHDLPRPRLRRVVRGGRKVPLCGRHCRHRGLLGALPRPVGIHRR
back to top

mRNA from alignment at L-elsbetiae_contig16642:2667..3385+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16642.4485.1 ID=mRNA_L-elsbetiae_contig16642.4485.1|Name=mRNA_L-elsbetiae_contig16642.4485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=719bp|location=Sequence derived from alignment at L-elsbetiae_contig16642:2667..3385+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGTCGCAGATCGAGTGCTTCGAGGACAACCCGGGCATCCTGATGTACG GCAACATGTGTGTCGTGTACACTACCGGGATCTGGCTCCTGCTGGCGTCC TTCCTCGAGCTGCCTGTGTCCACCACCCACTCCACCATCGGAGGCATCGT CGGAATGGCCATGACCTACCGCGGCCCCGACTGCGTCGTGTGGTACGAGG AGGCCGAAAAGTTCCCCTTTGTGGACGTGAGTACACATGTGTCTGTGGCG ACGATGCTGCAAACACAAAGTGTACTCCTACATGAGAATAAATATTGTGT GCACCGAGTTGTGAAGGGGGGTAAGGCTACCTCCAAACGGAACGCATAAA GATGGCAGAATACATCACACGCGTGTGAGATAACCTTGGGAAGTTCTCCG AACAACCCACTCCAATTTGGTGAAGGTGTCGAAAGTCTTCCCATGTTGTC AACCGAACCCCAGGTCTTTCCCGATCGGTCTGTACGTCGGTGCTCGTAAA GTCGTCGTTGTTGCATACCGTACACGTCGCGAAAAATGCCTGCGTCGTTT CTCACACCGTTGCTCACCATCCTCAAATCAGTCCATTGTACGATTTAATC ACGATCCCCAATTAACCACCGAACGGCACCGATCGACCGATTGGGCGAAT CACAGGGCATTGCCGGCATCGTGGCCTCTTGGGTGCTCTCCCCCGTCCTG TCGGGATTCATCGCCGTCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16642:2667..3385+

>mRNA_L-elsbetiae_contig16642.4485.1 ID=mRNA_L-elsbetiae_contig16642.4485.1|Name=mRNA_L-elsbetiae_contig16642.4485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig16642:2667..3385+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGTCGCAGATCGAGTGCTTCGAGGACAACCCGGGCATCCTGATGTACG
GCAACATGTGTGTCGTGTACACTACCGGGATCTGGCTCCTGCTGGCGTCC
TTCCTCGAGCTGCCTGTGTCCACCACCCACTCCACCATCGGAGGCATCGT
CGGAATGGCCATGACCTACCGCGGCCCCGACTGCGTCGTGTGGTACGAGG
AGGCCGAAAAGTTCCCCTTTGTGGACCTTGTCGCAGATCGAGTGCTTCGA
GGACAACCCGGGCATCCTGATGTACGGCAACATGTGTGTCGTGTACACTA
CCGGGATCTGGCTCCTGCTGGCGTCCTTCCTCGAGCTGCCTGTGTCCACC
ACCCACTCCACCATCGGAGGCATCGTCGGAATGGCCATGACCTACCGCGG
CCCCGACTGCGTCGTGTGGTACGAGGAGGCCGAAAAGTTCCCCTTTGTGG
ACGGCATTGCCGGCATCGTGGCCTCTTGGGTGCTCTCCCCCGTCCTGTCG
GGATTCATCGCCGTGGCATTGCCGGCATCGTGGCCTCTTGGGTGCTCTCC
CCCGTCCTGTCGGGATTCATCGCCGT
back to top