mRNA_L-elsbetiae_contig16631.4482.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16631.4482.1
Unique NamemRNA_L-elsbetiae_contig16631.4482.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16631.4482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16631contigL-elsbetiae_contig16631:2957..3628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size163
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815691.0435023-CDS-L-elsbetiae_contig16631:2957..30351622815691.0435023-CDS-L-elsbetiae_contig16631:2957..3035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16631 2958..3035 -
1691683040.6480985-CDS-L-elsbetiae_contig16631:2957..30351691683040.6480985-CDS-L-elsbetiae_contig16631:2957..3035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16631 2958..3035 -
1622815691.0559282-CDS-L-elsbetiae_contig16631:3544..36281622815691.0559282-CDS-L-elsbetiae_contig16631:3544..3628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16631 3545..3628 -
1691683040.6579168-CDS-L-elsbetiae_contig16631:3544..36281691683040.6579168-CDS-L-elsbetiae_contig16631:3544..3628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16631 3545..3628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16631.4482.1prot_L-elsbetiae_contig16631.4482.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16631 2958..3628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16631.4482.1

>prot_L-elsbetiae_contig16631.4482.1 ID=prot_L-elsbetiae_contig16631.4482.1|Name=mRNA_L-elsbetiae_contig16631.4482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
RFVDWCSGLFAQRMPHNPRTTLYIATEGRSAGHAHYCVLPKPNKIVQHPR
ETAE
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mRNA from alignment at L-elsbetiae_contig16631:2957..3628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16631.4482.1 ID=mRNA_L-elsbetiae_contig16631.4482.1|Name=mRNA_L-elsbetiae_contig16631.4482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig16631:2957..3628- (Laminarionema elsbetiae ELsaHSoW15)
CGCTTTGTGGACTGGTGCAGCGGACTTTTTGCCCAGCGAATGCCGCACAA
CCCTAGGACGACGCTCTACATAGCCACAGAAGGGGTGAGCGCCTACAGAT
ATCTATAGTCTATAGGTGTGTCCATTGTATTCCACCGACTCTTTACCAGG
AACACCTGGCCTCGCCTGCGGAACGCTCGAATTCCGTGCGTCCCCCGAAC
CCCGGAATATATGCGCAAGCAAGGTCTCTGTCCAGAAGACACATCCTCGG
CTTTATTTGTGGGCTTTTGGCCGGGGAAACTGGTCAGGGGAGCTTTTTTG
GCACACTCACTATTGTATGGGCCGAGGAAATGCCTTTGGAAAATAAATCG
TGTCATGATGATGAAGAGGGAATCTCCCGATACAAATAGATACGCCGACT
CCTATTTTTGTTCCTGGGACTGGTCGTCACAAAGCGTGATTGTTTATTGT
TGAGCATCGACGAGGAGCGAGCTCCCTTTCATCTTTAATCAGGTGTAAGT
GCGGGTTGTCAATACCTTGGCGCCTCGGGCTAACTGTTACCCCCACTACT
TTCCACGGCCCTTTTTATACGTGTTCTTATCCGACTAACCCAGCGATCAG
CCGGTCACGCGCATTATTGCGTGTTGCCCAAGCCTAACAAGATCGTACAA
CATCCCCGCGAAACGGCGGAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16631:2957..3628-

>mRNA_L-elsbetiae_contig16631.4482.1 ID=mRNA_L-elsbetiae_contig16631.4482.1|Name=mRNA_L-elsbetiae_contig16631.4482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig16631:2957..3628- (Laminarionema elsbetiae ELsaHSoW15)
CGCTTTGTGGACTGGTGCAGCGGACTTTTTGCCCAGCGAATGCCGCACAA
CCCTAGGACGACGCTCTACATAGCCACAGAAGGGCGCTTTGTGGACTGGT
GCAGCGGACTTTTTGCCCAGCGAATGCCGCACAACCCTAGGACGACGCTC
TACATAGCCACAGAAGGGCGATCAGCCGGTCACGCGCATTATTGCGTGTT
GCCCAAGCCTAACAAGATCGTACAACATCCCCGCGAAACGGCGGAACGAT
CAGCCGGTCACGCGCATTATTGCGTGTTGCCCAAGCCTAACAAGATCGTA
CAACATCCCCGCGAAACGGCGGAA
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