mRNA_L-elsbetiae_contig1661.4470.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1661.4470.1
Unique NamemRNA_L-elsbetiae_contig1661.4470.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1661.4470.1 vs. uniprot
Match: D8LCQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ1_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 1.220e-60
Identity = 94/113 (83.19%), Postives = 106/113 (93.81%), Query Frame = 2
Query:   29 VIPASRAISIVGMLMASHQLPSGRYAVKDELQVWPVQQYRLASGRDAFFKGLLSLHEDEEKRTKGWIERKLAPAYDPAKEDRLTFELFERVLKSSPVCAWGECLGRRNLNDKL 367
            ++PAS+AI++VGMLMASHQLPSGRYAVKDE +VWPVQQYRLASGRDAF +GLLSLHEDEEKRTKGWIERKLAPAYDPA E++++FELFERVL+S PVCAWGECLG RN  DKL
Sbjct:  192 LLPASKAIALVGMLMASHQLPSGRYAVKDESRVWPVQQYRLASGRDAFLEGLLSLHEDEEKRTKGWIERKLAPAYDPANEEQISFELFERVLRSGPVCAWGECLGIRN-RDKL 303          
BLAST of mRNA_L-elsbetiae_contig1661.4470.1 vs. uniprot
Match: A0A6H5JDJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDJ3_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.550e-60
Identity = 99/123 (80.49%), Postives = 113/123 (91.87%), Query Frame = 2
Query:    2 GQGQEEEEE-VIPASRAISIVGMLMASHQLPSGRYAVKDELQVWPVQQYRLASGRDAFFKGLLSLHEDEEKRTKGWIERKLAPAYDPAKEDRLTFELFERVLKSSPVCAWGECLGRRNLNDKL 367
            GQ Q+ +E  ++PAS+AIS+VGMLMASHQLPSGRYAVKDE +VWPVQQYRLASGRDAF +GLLSLHEDEEKRTKGWIERKLAPAYDPA+E++++FELFERVL+S PVCAWGECLG RN  DKL
Sbjct:  309 GQDQDTDEATLLPASKAISLVGMLMASHQLPSGRYAVKDESRVWPVQQYRLASGRDAFLEGLLSLHEDEEKRTKGWIERKLAPAYDPAQEEQISFELFERVLRSGPVCAWGECLGIRN-RDKL 430          
BLAST of mRNA_L-elsbetiae_contig1661.4470.1 vs. uniprot
Match: A0A835Z460_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z460_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.870e-22
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 2
Query:    5 QGQEEEEEVIPASRAISIVGMLMASHQLPSGRYAVKDELQVWPVQQYRLASGRDAFFKGLLSLHEDEEKRTKGWIERKLAPAYDPAKEDRLTFELFERVLKSSPVCAWGEC 337
            QG +   +V  AS A  ++ +L+A+ QLPS RYA+K   + WP QQYRLASG D     L  LH+D+EK+ KGWIERKL+     +    ++++ F+ +L+ + VCAWGEC
Sbjct:  165 QGGDNTTDVDYASMA-RLLDLLLATRQLPSSRYAIKSG-EKWPTQQYRLASGTDLLENALAELHDDDEKKKKGWIERKLSAPRAQSAASPISYQQFKDILECNCVCAWGEC 273          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1661.4470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCQ1_ECTSI1.220e-6083.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDJ3_9PHAE1.550e-6080.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z460_9STRA7.870e-2245.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1661contigL-elsbetiae_contig1661:4673..10776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size404
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1661.4470.1prot_L-elsbetiae_contig1661.4470.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1661 4673..10776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.741483-CDS-L-elsbetiae_contig1661:4672..47711622815689.741483-CDS-L-elsbetiae_contig1661:4672..4771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1661 4673..4771 +
1691683039.8735392-CDS-L-elsbetiae_contig1661:4672..47711691683039.8735392-CDS-L-elsbetiae_contig1661:4672..4771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1661 4673..4771 +
1622815689.7512865-CDS-L-elsbetiae_contig1661:7269..74381622815689.7512865-CDS-L-elsbetiae_contig1661:7269..7438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1661 7270..7438 +
1691683039.883637-CDS-L-elsbetiae_contig1661:7269..74381691683039.883637-CDS-L-elsbetiae_contig1661:7269..7438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1661 7270..7438 +
1622815689.7654338-CDS-L-elsbetiae_contig1661:10642..107761622815689.7654338-CDS-L-elsbetiae_contig1661:10642..10776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1661 10643..10776 +
1691683039.8951619-CDS-L-elsbetiae_contig1661:10642..107761691683039.8951619-CDS-L-elsbetiae_contig1661:10642..10776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1661 10643..10776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1661.4470.1

>prot_L-elsbetiae_contig1661.4470.1 ID=prot_L-elsbetiae_contig1661.4470.1|Name=mRNA_L-elsbetiae_contig1661.4470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
RAGAGGGGRGHPGLEGDIDSRHAHGLSPASIGKVRRKGRAASLARAAVPA
GLGQRRVLQGAAVAPRGRGEAYQGMDRAQAGAGVRPRQGGPIDVRAVRAG
SEEQPGVRVGRVLGPAQPERQAVIARRTRGGGGE
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mRNA from alignment at L-elsbetiae_contig1661:4673..10776+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1661.4470.1 ID=mRNA_L-elsbetiae_contig1661.4470.1|Name=mRNA_L-elsbetiae_contig1661.4470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6104bp|location=Sequence derived from alignment at L-elsbetiae_contig1661:4673..10776+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGCAGGGGCAGGAGGAGGAGGAAGAGGTCATCCCGGCCTCGAGGGCGA TATCGATAGTCGGCATGCTCATGGCCTCTCACCAGCTTCCATCGGGAAGG TGAGCGGCGGCGCGGCCCCTTCTCCTGTGGTGTTATTCTGCAGCGCTTCT AAAATAAACAATGAATCAAAGATGGAACCTACCCCACACTAGAGCAAGGA CTCGATATGGGGTTCAAACGGTATTCCATACATGAGACGTAATATGTGGC GAAGCGAGCAGAAAAACAACCTAAAATATCAGAAGAGTTCAACATCTCCC CTGCAAAGATTTTGTTTTGTTGCGGCGGAAGGCGGTCGGGCCTGTAGCGA GCACGTTGGTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTTTTT CTCACATTAGCTCTCTAGTCCAAGGCATCCTTGGGGGCCCGTGATCACAA AACAAGGCTCACTCGACGCCGCGGTAAAAAAATAAAACAAAAAAATATGG TATATACATATGCGCCCGGCGGTACTAAACTGAGCCCCGAAGGATCTTGC GTCTCGCCGACACAAAAATCAAAGGTATATATATAGAGTACATACATACC ATGATATATACTACTCGGAAGATAAAATAAAATGAAAGCTCAATAAAAAG CAAACCAGCAACCACGCCAGGTGAGGGAAGAGAACTACAGAGAGCCGAAG GCTTCCCACACCGGCCTAAAAGGCCGGAGGGTTCCGCGTCGTGTTCTCGC CGACCAGGCACCCCCCAAACCCGCACCGCACGTGTGGATAGCCGGGCCTC GACTCCGTTGGCCATTCGTGGAATCGCGGAAGAACATAACTTGTTACTAT ACTGAGTTCAGTGTAGAGAAAAAGAAGGGGGAAAAGTGGCCAACGGAATC AAGGCCTAGTGGATATATTTAGCCGGACCGCCTTCGCGAAGAGCTCCTGT CTATTAGAGAAAAAGAAGGTGTAGGTAAAACAGGGGGAAAAGTGGCCAAC GGAATCAAGGCCTAGTGAATATATTTAGCCGGACCGCCTTCGCAAAGAAC TCCTGTCTATTAGAGAAAAAGAAGGTGTAGGTAAAACAGGGGGAAAAGTT CGCGAAGAACTCCTGTCTATAGGCTCTTCCTGCGGTAGGACCCCTAATTC TGCAAAAGTGGCACTACTGACTGTGGGGGATTTTTCATTATAAGTAAGTA TTTCCTCGATAAATTCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCGCCGGGTCGCGTTTTTT GTCGCCGGGGGCCCGCNNNNNNNNNNATGAAAATTGGCCCTCCTGTCCGT GGGGCTTTTTTTCTTATTAAGCGCTTTTTCCCCGATTATTTCCCCCCCCC CCCCCCCCCCGCGCCCCCGCGCGCGCTGCCCCCACAGCTCTTTTTGAGAA TTTGGGGCTGGCTCTATTGCAGGAAACCTTAAGGAAAATAATAGACAGGG GTTCCGTAACCCTAAGCCTAACCCTAAACGGACCCCCCATTAGCCGTTTC CATACCTAAATCACATAAGATTTCTTCCAGGAAAAAACTGCATTGGGAGG CTACATACCGTCCGTAGGTGACACAAGATACCACACCCCCTGGACCGAAT TTTAGAGCTCGATTTCTCCGTAACGAAGAGGGTGCCAGCACCAAACGACA CGTTTTCGGACGGCCCTTGACTAGATATTTCCAACGCCACCCTTTGTGGC ACTGGCACTCTTCTTGCGGGGGAGGAACCGAGCGAAAATCTGTCCAGGGG ATGTGGTATCTTGTGTCACCTACGGTACTGGGATAGCCGGTACGGGCACC TGTTTCCCCCCCCCGCCCGCACACGCACACGCTCCGGTCGGTGCTAGTTA CAATAGCTCCCCGTGATGGTCAACCCGCGTTGCTGCGCCGTTCATGTGGA GGCCATCTTGCGTGGACCTGCTATGTATTTACAGTTCTCTTTTGTGCTGG AAATATTTCTGGGCGAGTTGTTCGCCGCCTTCGAATAGTAGGACAACCCC CCTTGCGGTTAGAGCTGGAAAGACGGTGCCCTCGAGAGAAACCAGCATCA ATCGCCAGCAACACATCGACAACAGCAGCGGCGGCGGCGGCAGCAGCAGC AGCAGCAGCAGCAGCTTGAAGCGGTACATACACAAGCGAAAAGCGCTTGC CGGAAACGCTCACAGCACAATGCGAGTTGCAGCTGCCATCGACGCGGAGC GAGCGTGTCTCTTTTTGTGATTACATAATCATGCCGGTGGAGGCGTGGCT TTTCCCTCTCTCTTCTTTAATTAATGTATAAAGATGCCAGCAGTGTACGT CCAGTCTGCGAAAAAGTCGTTCCAGAGGGACTACTACTGTTGTAGGCATA CCACACCCCCTGTTTCCCCATCTTTAATTAATGCATATTTACAAATGTCA GCAGTCTACGTCCAGTCAGCGAAGAATTCGTTCCAGAGGGACTGTTGTAG GCGTTCTAACCCCCAGTTTCCCCACATCCCAGATATATAAATATATACAA GTATATTCGCACGAAATTCCCCATCTTTTGCGTTTTTTCTTCTGCAGGTA CGCCGTAAAGGACGAGCTGCAAGTCTGGCCCGTGCAGCAGTACCGGCTGG CCTCGGGCAGAGACGCGTTCTTCAAGGGGCTGCTGTCGCTCCACGAGGAC GAGGAGAAGCGTACCAAGGGATGGATCGAGCGCAAGCTGGCGCCGGCGTA CGACCCCGCCAAGGAGGTATACTATGTATGTAGTTGTTTTTTTTTCCGGA TGTTGTTGTTGTTGTTGTTGTTGTTGTTTCTTCACATTAAAAACCGTTCC GATCTCTCCACCCAGTACCTCCCTGTGTCCATACAATCCAACACTTGATG CAGTCAATTCCCGTGGTCACAGGCTAACTTATACCTAAAAAACGGTATAC GAAAATAAAAATGGACCGGAATGGTCAGCACGCGATGAAAATCAAAGACA AATAGTGTGGAGCCCCTCGCTCCCCTCCACACGCTATGTTGTACACCCCC TGGTCCTCTCTTGGTACCCTAACAATGCCAGGGTGTTCCGTGCCGGGTTG TCGCCGGTCAGGCCCAAGCATCTATAGTCCTCCCCACCTTTACCAGCGCT CGGATGACACTCATGTTTATGGAAGCTTAATCTTTCACGAAAATCTTGAT CTTTGAGCAAGATTTTTATTTCGTCTTTTTATGGGAGAAAATCCTTAAAA AAATCTTGCCCAAGATTTGGTTTCCGGCAAAATGTTTGGCCTTCGAGCAA ATGTTTGGCAAAGATTTGACCATCTGGCAGCTGGACAAAATCTTGCCCGG AGGCGGCGAGATTTTTTCTCCTGCAGACTCCCGTCGCCAGCACCGACCGC TGCGCCTTCAATACTGAACGTGACGACTTTGTAAACTGCTCCGGATAACC CTAGAGCCTTCGCGTAAACGTACCAACCGCTCGTAAATGGCGGGAGCCAG TCCGTCGTGTGGGGAAAAAACGTGTGTGCAGAGTGTCCGGAGAAAGCATC GTTTGCGCCTTGAAACAGCCAAAAATCCGCCTGCTGCAAGGAGAGCACAC GATGTCGCAGTCCAGCTCTCGCTCGCTAGACCATTTATTTATGTGACACC TTCTTGGCTGCCACCTCCATAAACGTGTCTCATCCGGGTGGGCGTGGGTT GCCATTGTGCGCCTTCAGTCGGCAGCAAATCGCATCGCCGTGGACTCGAG TGTTCTGCGTGTTTTTTTTTAAAGAGCGTGAACAAGTACTCTGTACTCGA GTAAAAAACAGAGGCTGGATTTTTCACGTTTTGCACACTCATGTCCACGG CGATGTGATTTGCTGCCGACTGAAGGCGCCCACTGCCAACGCCCGCTCGA CCGGATGAGATACGTTTGTGGAGGTGACAGCAAAGAAGGTGTCACATGAA GAAATGGTCTAGCGGGCGAGAGCTGGTCTGCGATGTAGTGAGCTCTCTGC GTCGGCGATTTGTTTTGGCCGTTGCGGTAAGTTGCGGCGTGAAGTGCACC GACGCTACTTGCCGCTACGCCTGGAAAACGTTTTTGTATGCCTGAGAGGA GCCTCCGGTACAATCCGACGGCTAACATATCAACACGGAAGCTTTTCGTT TGGTCGGGGCCTTTTTTCGAGCTCGCTACGTTGCAATTTTGTGGCGCATT GGTGGTAAATCAGCTGTCAACCGGCGAGGCCAATCTCCACCGCGGTCGAA AAGTTCGAGCAGATCAAGATTTTTCCCCCACAGCAGTAGTAGTGGCTGGC ACAAAATTTTCTCTGGCCGAATATTGACAGGAAAATTTTGACCAAAAGAT GAAGATTCTTGTCAAAGATTATGGTTCCATGAACATAGGTGTGTGAGGGT CTTTTTTTTTCTTTTTTTTTCTCTTAAAACCAATGGATGGATGGGATACC GACGCACACGTTTACGTACGTAGTTTTTTTTTTCTTCTTATACTTACGGA TACCCACACGTTTGCCAGCGCGCTCGGATGAGGGGTCTTCCTCTTTTCGT TTTTTTTCTTTTTTTTTTTTTTTTCTTACCGATGGATGGATGCATAGACG GGTACCCACACACCACACAACACACACGTTTACCAGGGTTTAGTTTTCGG AAGAGGGGGGGGTCTGAGCAAATTTAGAAGCAGCGCGCCTCTCTGTCACT GCGTGTGTATGTATGTATTGTATGTATGTGTTTTTTCTTTGATTGTTCTG GGCACAGGTGCAGTGATAGCTGGGAGGGGGGGGGGGGGGGGGGGGGGGTT TTGGCCGCAGGCGGTATTCCAACAAAAATTAAAAAAAAAAGAAAGAAAAC AGCTGAAAGCCCAACACCCACCAAANNNNNNNNNNTCTGTTTTTTCTGAT ATGATTGCGAGTGGAAGATATGGGATTAGTGGTAGTATTACGATTCCTTC TTTGTTTTTCTCTGGCCCAAGTCGTCTGTACATACATATGTATCTATGCT ACCGCCGTGGCGATAGTTCATTAAGTATGCGGTTCGGTTCTTTGGTAAGG AAAAGACGCATGGAGGCTTAAAGTACGGTATTTTTTTTTCTTCTTTTGTT TTCCTTTCTATCGGTGGGTATTTGTTCTTCGTGCGTTTTACTGCTTTTGA CATTAGCACGCACGCCTCGCCCCCTGTGTTTTCATAGAAGCTGATGGGGC ATGGACCGACGACTGCTGTGCGCGGAATCATGGGCCGATCGGCGACGGGT CTTTTTTTTGTTGGGTTTTCCCATCCGATCCTGCAGCGACGCTTGGGGGC GTTCGACACCTGGTGGCACGCTGCTCTCGAAATTGCTGCCAAATGTCCCG ATCGCGTCACCTCACCGGAAGACCTAGCGTCCCACATACGTATCAACAAC ACATTTGCTGTTGTCTCCATACATATATATATGTATGAAACCGTACCATA CATATATATGTATGAAACTATATGGTATCTGTTTTTGCTTGCACAGCCGT GCTCCTGCGTTCCGAATTGCCCCCTTTCGCCGAGTCGGCGTAACTCTGTC TTCTCCCTTTTAGTGGTTGCGTCTTCCGGGATTACACATCAAGTTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTTCCCGCGGTT CGGGGGGCGGGGGCGGGGGTGGTGAGTAGTGAGCAGGACTACTGTTGAAA CCCCGTGTTGGTTTGTGCGTGTTGGGTTTCATTCCATCAACACCTCTTGT TTGTTTTGGAAAATAAATCAGGAAAAATCAAAGGAGAAAACCTCCCCACC TTAATTAAGAGACGGGGCTCCGTGGCGAATTAACAGTTACAAAAAAAAGC ACTATTTAGTTGATGTACATACATGCAGTATTCATTTGCTTATTTGCTTG TTTCGCGCGCGCGCGCCGCGCTTCTTGGTCCGGCACGGCACGTTTTCACG CCTTGCTTTTTTTGCGGCAGGACCGATTGACGTTCGAGCTGTTCGAGCGG GTTCTGAAGAGCAGCCCGGTGTGCGCGTGGGGCGAGTGCTTGGGCCGGCG CAACCTGAACGACAAGCTGTGATCGCAAGGCGCACGCGCGGCGGCGGCGG CGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1661:4673..10776+

>mRNA_L-elsbetiae_contig1661.4470.1 ID=mRNA_L-elsbetiae_contig1661.4470.1|Name=mRNA_L-elsbetiae_contig1661.4470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig1661:4673..10776+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGCAGGGGCAGGAGGAGGAGGAAGAGGTCATCCCGGCCTCGAGGGCGA
TATCGATAGTCGGCATGCTCATGGCCTCTCACCAGCTTCCATCGGGAAGC
GGGCAGGGGCAGGAGGAGGAGGAAGAGGTCATCCCGGCCTCGAGGGCGAT
ATCGATAGTCGGCATGCTCATGGCCTCTCACCAGCTTCCATCGGGAAGGT
ACGCCGTAAAGGACGAGCTGCAAGTCTGGCCCGTGCAGCAGTACCGGCTG
GCCTCGGGCAGAGACGCGTTCTTCAAGGGGCTGCTGTCGCTCCACGAGGA
CGAGGAGAAGCGTACCAAGGGATGGATCGAGCGCAAGCTGGCGCCGGCGT
ACGACCCCGCCAAGGAGGTACGCCGTAAAGGACGAGCTGCAAGTCTGGCC
CGTGCAGCAGTACCGGCTGGCCTCGGGCAGAGACGCGTTCTTCAAGGGGC
TGCTGTCGCTCCACGAGGACGAGGAGAAGCGTACCAAGGGATGGATCGAG
CGCAAGCTGGCGCCGGCGTACGACCCCGCCAAGGAGGACCGATTGACGTT
CGAGCTGTTCGAGCGGGTTCTGAAGAGCAGCCCGGTGTGCGCGTGGGGCG
AGTGCTTGGGCCGGCGCAACCTGAACGACAAGCTGTGATCGCAAGGCGCA
CGCGCGGCGGCGGCGGCGAGGACCGATTGACGTTCGAGCTGTTCGAGCGG
GTTCTGAAGAGCAGCCCGGTGTGCGCGTGGGGCGAGTGCTTGGGCCGGCG
CAACCTGAACGACAAGCTGTGATCGCAAGGCGCACGCGCGGCGGCGGCGG
CGAG
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