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Homology
BLAST of mRNA_L-elsbetiae_contig1661.4470.1 vs. uniprot
Match: D8LCQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ1_ECTSI) HSP 1 Score: 197 bits (501), Expect = 1.220e-60 Identity = 94/113 (83.19%), Postives = 106/113 (93.81%), Query Frame = 2
Query: 29 VIPASRAISIVGMLMASHQLPSGRYAVKDELQVWPVQQYRLASGRDAFFKGLLSLHEDEEKRTKGWIERKLAPAYDPAKEDRLTFELFERVLKSSPVCAWGECLGRRNLNDKL 367
++PAS+AI++VGMLMASHQLPSGRYAVKDE +VWPVQQYRLASGRDAF +GLLSLHEDEEKRTKGWIERKLAPAYDPA E++++FELFERVL+S PVCAWGECLG RN DKL
Sbjct: 192 LLPASKAIALVGMLMASHQLPSGRYAVKDESRVWPVQQYRLASGRDAFLEGLLSLHEDEEKRTKGWIERKLAPAYDPANEEQISFELFERVLRSGPVCAWGECLGIRN-RDKL 303
BLAST of mRNA_L-elsbetiae_contig1661.4470.1 vs. uniprot
Match: A0A6H5JDJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDJ3_9PHAE) HSP 1 Score: 201 bits (510), Expect = 1.550e-60 Identity = 99/123 (80.49%), Postives = 113/123 (91.87%), Query Frame = 2
Query: 2 GQGQEEEEE-VIPASRAISIVGMLMASHQLPSGRYAVKDELQVWPVQQYRLASGRDAFFKGLLSLHEDEEKRTKGWIERKLAPAYDPAKEDRLTFELFERVLKSSPVCAWGECLGRRNLNDKL 367
GQ Q+ +E ++PAS+AIS+VGMLMASHQLPSGRYAVKDE +VWPVQQYRLASGRDAF +GLLSLHEDEEKRTKGWIERKLAPAYDPA+E++++FELFERVL+S PVCAWGECLG RN DKL
Sbjct: 309 GQDQDTDEATLLPASKAISLVGMLMASHQLPSGRYAVKDESRVWPVQQYRLASGRDAFLEGLLSLHEDEEKRTKGWIERKLAPAYDPAQEEQISFELFERVLRSGPVCAWGECLGIRN-RDKL 430
BLAST of mRNA_L-elsbetiae_contig1661.4470.1 vs. uniprot
Match: A0A835Z460_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z460_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 7.870e-22 Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 2
Query: 5 QGQEEEEEVIPASRAISIVGMLMASHQLPSGRYAVKDELQVWPVQQYRLASGRDAFFKGLLSLHEDEEKRTKGWIERKLAPAYDPAKEDRLTFELFERVLKSSPVCAWGEC 337
QG + +V AS A ++ +L+A+ QLPS RYA+K + WP QQYRLASG D L LH+D+EK+ KGWIERKL+ + ++++ F+ +L+ + VCAWGEC
Sbjct: 165 QGGDNTTDVDYASMA-RLLDLLLATRQLPSSRYAIKSG-EKWPTQQYRLASGTDLLENALAELHDDDEKKKKGWIERKLSAPRAQSAASPISYQQFKDILECNCVCAWGEC 273
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 404 |
Cds size | 402 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815689.741483-CDS-L-elsbetiae_contig1661:4672..4771 | 1622815689.741483-CDS-L-elsbetiae_contig1661:4672..4771 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1661 4673..4771 + |
1691683039.8735392-CDS-L-elsbetiae_contig1661:4672..4771 | 1691683039.8735392-CDS-L-elsbetiae_contig1661:4672..4771 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1661 4673..4771 + |
1622815689.7512865-CDS-L-elsbetiae_contig1661:7269..7438 | 1622815689.7512865-CDS-L-elsbetiae_contig1661:7269..7438 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1661 7270..7438 + |
1691683039.883637-CDS-L-elsbetiae_contig1661:7269..7438 | 1691683039.883637-CDS-L-elsbetiae_contig1661:7269..7438 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1661 7270..7438 + |
1622815689.7654338-CDS-L-elsbetiae_contig1661:10642..10776 | 1622815689.7654338-CDS-L-elsbetiae_contig1661:10642..10776 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1661 10643..10776 + |
1691683039.8951619-CDS-L-elsbetiae_contig1661:10642..10776 | 1691683039.8951619-CDS-L-elsbetiae_contig1661:10642..10776 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1661 10643..10776 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1661.4470.1 >prot_L-elsbetiae_contig1661.4470.1 ID=prot_L-elsbetiae_contig1661.4470.1|Name=mRNA_L-elsbetiae_contig1661.4470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
RAGAGGGGRGHPGLEGDIDSRHAHGLSPASIGKVRRKGRAASLARAAVPA GLGQRRVLQGAAVAPRGRGEAYQGMDRAQAGAGVRPRQGGPIDVRAVRAG SEEQPGVRVGRVLGPAQPERQAVIARRTRGGGGE back to topmRNA from alignment at L-elsbetiae_contig1661:4673..10776+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1661.4470.1 ID=mRNA_L-elsbetiae_contig1661.4470.1|Name=mRNA_L-elsbetiae_contig1661.4470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6104bp|location=Sequence derived from alignment at L-elsbetiae_contig1661:4673..10776+ (Laminarionema elsbetiae ELsaHSoW15) CGGGCAGGGGCAGGAGGAGGAGGAAGAGGTCATCCCGGCCTCGAGGGCGA
TATCGATAGTCGGCATGCTCATGGCCTCTCACCAGCTTCCATCGGGAAGG
TGAGCGGCGGCGCGGCCCCTTCTCCTGTGGTGTTATTCTGCAGCGCTTCT
AAAATAAACAATGAATCAAAGATGGAACCTACCCCACACTAGAGCAAGGA
CTCGATATGGGGTTCAAACGGTATTCCATACATGAGACGTAATATGTGGC
GAAGCGAGCAGAAAAACAACCTAAAATATCAGAAGAGTTCAACATCTCCC
CTGCAAAGATTTTGTTTTGTTGCGGCGGAAGGCGGTCGGGCCTGTAGCGA
GCACGTTGGTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTTTTT
CTCACATTAGCTCTCTAGTCCAAGGCATCCTTGGGGGCCCGTGATCACAA
AACAAGGCTCACTCGACGCCGCGGTAAAAAAATAAAACAAAAAAATATGG
TATATACATATGCGCCCGGCGGTACTAAACTGAGCCCCGAAGGATCTTGC
GTCTCGCCGACACAAAAATCAAAGGTATATATATAGAGTACATACATACC
ATGATATATACTACTCGGAAGATAAAATAAAATGAAAGCTCAATAAAAAG
CAAACCAGCAACCACGCCAGGTGAGGGAAGAGAACTACAGAGAGCCGAAG
GCTTCCCACACCGGCCTAAAAGGCCGGAGGGTTCCGCGTCGTGTTCTCGC
CGACCAGGCACCCCCCAAACCCGCACCGCACGTGTGGATAGCCGGGCCTC
GACTCCGTTGGCCATTCGTGGAATCGCGGAAGAACATAACTTGTTACTAT
ACTGAGTTCAGTGTAGAGAAAAAGAAGGGGGAAAAGTGGCCAACGGAATC
AAGGCCTAGTGGATATATTTAGCCGGACCGCCTTCGCGAAGAGCTCCTGT
CTATTAGAGAAAAAGAAGGTGTAGGTAAAACAGGGGGAAAAGTGGCCAAC
GGAATCAAGGCCTAGTGAATATATTTAGCCGGACCGCCTTCGCAAAGAAC
TCCTGTCTATTAGAGAAAAAGAAGGTGTAGGTAAAACAGGGGGAAAAGTT
CGCGAAGAACTCCTGTCTATAGGCTCTTCCTGCGGTAGGACCCCTAATTC
TGCAAAAGTGGCACTACTGACTGTGGGGGATTTTTCATTATAAGTAAGTA
TTTCCTCGATAAATTCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCGCCGGGTCGCGTTTTTT
GTCGCCGGGGGCCCGCNNNNNNNNNNATGAAAATTGGCCCTCCTGTCCGT
GGGGCTTTTTTTCTTATTAAGCGCTTTTTCCCCGATTATTTCCCCCCCCC
CCCCCCCCCCGCGCCCCCGCGCGCGCTGCCCCCACAGCTCTTTTTGAGAA
TTTGGGGCTGGCTCTATTGCAGGAAACCTTAAGGAAAATAATAGACAGGG
GTTCCGTAACCCTAAGCCTAACCCTAAACGGACCCCCCATTAGCCGTTTC
CATACCTAAATCACATAAGATTTCTTCCAGGAAAAAACTGCATTGGGAGG
CTACATACCGTCCGTAGGTGACACAAGATACCACACCCCCTGGACCGAAT
TTTAGAGCTCGATTTCTCCGTAACGAAGAGGGTGCCAGCACCAAACGACA
CGTTTTCGGACGGCCCTTGACTAGATATTTCCAACGCCACCCTTTGTGGC
ACTGGCACTCTTCTTGCGGGGGAGGAACCGAGCGAAAATCTGTCCAGGGG
ATGTGGTATCTTGTGTCACCTACGGTACTGGGATAGCCGGTACGGGCACC
TGTTTCCCCCCCCCGCCCGCACACGCACACGCTCCGGTCGGTGCTAGTTA
CAATAGCTCCCCGTGATGGTCAACCCGCGTTGCTGCGCCGTTCATGTGGA
GGCCATCTTGCGTGGACCTGCTATGTATTTACAGTTCTCTTTTGTGCTGG
AAATATTTCTGGGCGAGTTGTTCGCCGCCTTCGAATAGTAGGACAACCCC
CCTTGCGGTTAGAGCTGGAAAGACGGTGCCCTCGAGAGAAACCAGCATCA
ATCGCCAGCAACACATCGACAACAGCAGCGGCGGCGGCGGCAGCAGCAGC
AGCAGCAGCAGCAGCTTGAAGCGGTACATACACAAGCGAAAAGCGCTTGC
CGGAAACGCTCACAGCACAATGCGAGTTGCAGCTGCCATCGACGCGGAGC
GAGCGTGTCTCTTTTTGTGATTACATAATCATGCCGGTGGAGGCGTGGCT
TTTCCCTCTCTCTTCTTTAATTAATGTATAAAGATGCCAGCAGTGTACGT
CCAGTCTGCGAAAAAGTCGTTCCAGAGGGACTACTACTGTTGTAGGCATA
CCACACCCCCTGTTTCCCCATCTTTAATTAATGCATATTTACAAATGTCA
GCAGTCTACGTCCAGTCAGCGAAGAATTCGTTCCAGAGGGACTGTTGTAG
GCGTTCTAACCCCCAGTTTCCCCACATCCCAGATATATAAATATATACAA
GTATATTCGCACGAAATTCCCCATCTTTTGCGTTTTTTCTTCTGCAGGTA
CGCCGTAAAGGACGAGCTGCAAGTCTGGCCCGTGCAGCAGTACCGGCTGG
CCTCGGGCAGAGACGCGTTCTTCAAGGGGCTGCTGTCGCTCCACGAGGAC
GAGGAGAAGCGTACCAAGGGATGGATCGAGCGCAAGCTGGCGCCGGCGTA
CGACCCCGCCAAGGAGGTATACTATGTATGTAGTTGTTTTTTTTTCCGGA
TGTTGTTGTTGTTGTTGTTGTTGTTGTTTCTTCACATTAAAAACCGTTCC
GATCTCTCCACCCAGTACCTCCCTGTGTCCATACAATCCAACACTTGATG
CAGTCAATTCCCGTGGTCACAGGCTAACTTATACCTAAAAAACGGTATAC
GAAAATAAAAATGGACCGGAATGGTCAGCACGCGATGAAAATCAAAGACA
AATAGTGTGGAGCCCCTCGCTCCCCTCCACACGCTATGTTGTACACCCCC
TGGTCCTCTCTTGGTACCCTAACAATGCCAGGGTGTTCCGTGCCGGGTTG
TCGCCGGTCAGGCCCAAGCATCTATAGTCCTCCCCACCTTTACCAGCGCT
CGGATGACACTCATGTTTATGGAAGCTTAATCTTTCACGAAAATCTTGAT
CTTTGAGCAAGATTTTTATTTCGTCTTTTTATGGGAGAAAATCCTTAAAA
AAATCTTGCCCAAGATTTGGTTTCCGGCAAAATGTTTGGCCTTCGAGCAA
ATGTTTGGCAAAGATTTGACCATCTGGCAGCTGGACAAAATCTTGCCCGG
AGGCGGCGAGATTTTTTCTCCTGCAGACTCCCGTCGCCAGCACCGACCGC
TGCGCCTTCAATACTGAACGTGACGACTTTGTAAACTGCTCCGGATAACC
CTAGAGCCTTCGCGTAAACGTACCAACCGCTCGTAAATGGCGGGAGCCAG
TCCGTCGTGTGGGGAAAAAACGTGTGTGCAGAGTGTCCGGAGAAAGCATC
GTTTGCGCCTTGAAACAGCCAAAAATCCGCCTGCTGCAAGGAGAGCACAC
GATGTCGCAGTCCAGCTCTCGCTCGCTAGACCATTTATTTATGTGACACC
TTCTTGGCTGCCACCTCCATAAACGTGTCTCATCCGGGTGGGCGTGGGTT
GCCATTGTGCGCCTTCAGTCGGCAGCAAATCGCATCGCCGTGGACTCGAG
TGTTCTGCGTGTTTTTTTTTAAAGAGCGTGAACAAGTACTCTGTACTCGA
GTAAAAAACAGAGGCTGGATTTTTCACGTTTTGCACACTCATGTCCACGG
CGATGTGATTTGCTGCCGACTGAAGGCGCCCACTGCCAACGCCCGCTCGA
CCGGATGAGATACGTTTGTGGAGGTGACAGCAAAGAAGGTGTCACATGAA
GAAATGGTCTAGCGGGCGAGAGCTGGTCTGCGATGTAGTGAGCTCTCTGC
GTCGGCGATTTGTTTTGGCCGTTGCGGTAAGTTGCGGCGTGAAGTGCACC
GACGCTACTTGCCGCTACGCCTGGAAAACGTTTTTGTATGCCTGAGAGGA
GCCTCCGGTACAATCCGACGGCTAACATATCAACACGGAAGCTTTTCGTT
TGGTCGGGGCCTTTTTTCGAGCTCGCTACGTTGCAATTTTGTGGCGCATT
GGTGGTAAATCAGCTGTCAACCGGCGAGGCCAATCTCCACCGCGGTCGAA
AAGTTCGAGCAGATCAAGATTTTTCCCCCACAGCAGTAGTAGTGGCTGGC
ACAAAATTTTCTCTGGCCGAATATTGACAGGAAAATTTTGACCAAAAGAT
GAAGATTCTTGTCAAAGATTATGGTTCCATGAACATAGGTGTGTGAGGGT
CTTTTTTTTTCTTTTTTTTTCTCTTAAAACCAATGGATGGATGGGATACC
GACGCACACGTTTACGTACGTAGTTTTTTTTTTCTTCTTATACTTACGGA
TACCCACACGTTTGCCAGCGCGCTCGGATGAGGGGTCTTCCTCTTTTCGT
TTTTTTTCTTTTTTTTTTTTTTTTCTTACCGATGGATGGATGCATAGACG
GGTACCCACACACCACACAACACACACGTTTACCAGGGTTTAGTTTTCGG
AAGAGGGGGGGGTCTGAGCAAATTTAGAAGCAGCGCGCCTCTCTGTCACT
GCGTGTGTATGTATGTATTGTATGTATGTGTTTTTTCTTTGATTGTTCTG
GGCACAGGTGCAGTGATAGCTGGGAGGGGGGGGGGGGGGGGGGGGGGGTT
TTGGCCGCAGGCGGTATTCCAACAAAAATTAAAAAAAAAAGAAAGAAAAC
AGCTGAAAGCCCAACACCCACCAAANNNNNNNNNNTCTGTTTTTTCTGAT
ATGATTGCGAGTGGAAGATATGGGATTAGTGGTAGTATTACGATTCCTTC
TTTGTTTTTCTCTGGCCCAAGTCGTCTGTACATACATATGTATCTATGCT
ACCGCCGTGGCGATAGTTCATTAAGTATGCGGTTCGGTTCTTTGGTAAGG
AAAAGACGCATGGAGGCTTAAAGTACGGTATTTTTTTTTCTTCTTTTGTT
TTCCTTTCTATCGGTGGGTATTTGTTCTTCGTGCGTTTTACTGCTTTTGA
CATTAGCACGCACGCCTCGCCCCCTGTGTTTTCATAGAAGCTGATGGGGC
ATGGACCGACGACTGCTGTGCGCGGAATCATGGGCCGATCGGCGACGGGT
CTTTTTTTTGTTGGGTTTTCCCATCCGATCCTGCAGCGACGCTTGGGGGC
GTTCGACACCTGGTGGCACGCTGCTCTCGAAATTGCTGCCAAATGTCCCG
ATCGCGTCACCTCACCGGAAGACCTAGCGTCCCACATACGTATCAACAAC
ACATTTGCTGTTGTCTCCATACATATATATATGTATGAAACCGTACCATA
CATATATATGTATGAAACTATATGGTATCTGTTTTTGCTTGCACAGCCGT
GCTCCTGCGTTCCGAATTGCCCCCTTTCGCCGAGTCGGCGTAACTCTGTC
TTCTCCCTTTTAGTGGTTGCGTCTTCCGGGATTACACATCAAGTTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTTCCCGCGGTT
CGGGGGGCGGGGGCGGGGGTGGTGAGTAGTGAGCAGGACTACTGTTGAAA
CCCCGTGTTGGTTTGTGCGTGTTGGGTTTCATTCCATCAACACCTCTTGT
TTGTTTTGGAAAATAAATCAGGAAAAATCAAAGGAGAAAACCTCCCCACC
TTAATTAAGAGACGGGGCTCCGTGGCGAATTAACAGTTACAAAAAAAAGC
ACTATTTAGTTGATGTACATACATGCAGTATTCATTTGCTTATTTGCTTG
TTTCGCGCGCGCGCGCCGCGCTTCTTGGTCCGGCACGGCACGTTTTCACG
CCTTGCTTTTTTTGCGGCAGGACCGATTGACGTTCGAGCTGTTCGAGCGG
GTTCTGAAGAGCAGCCCGGTGTGCGCGTGGGGCGAGTGCTTGGGCCGGCG
CAACCTGAACGACAAGCTGTGATCGCAAGGCGCACGCGCGGCGGCGGCGG
CGAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1661:4673..10776+ >mRNA_L-elsbetiae_contig1661.4470.1 ID=mRNA_L-elsbetiae_contig1661.4470.1|Name=mRNA_L-elsbetiae_contig1661.4470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig1661:4673..10776+ (Laminarionema elsbetiae ELsaHSoW15) CGGGCAGGGGCAGGAGGAGGAGGAAGAGGTCATCCCGGCCTCGAGGGCGA TATCGATAGTCGGCATGCTCATGGCCTCTCACCAGCTTCCATCGGGAAGC GGGCAGGGGCAGGAGGAGGAGGAAGAGGTCATCCCGGCCTCGAGGGCGAT ATCGATAGTCGGCATGCTCATGGCCTCTCACCAGCTTCCATCGGGAAGGT ACGCCGTAAAGGACGAGCTGCAAGTCTGGCCCGTGCAGCAGTACCGGCTG GCCTCGGGCAGAGACGCGTTCTTCAAGGGGCTGCTGTCGCTCCACGAGGA CGAGGAGAAGCGTACCAAGGGATGGATCGAGCGCAAGCTGGCGCCGGCGT ACGACCCCGCCAAGGAGGTACGCCGTAAAGGACGAGCTGCAAGTCTGGCC CGTGCAGCAGTACCGGCTGGCCTCGGGCAGAGACGCGTTCTTCAAGGGGC TGCTGTCGCTCCACGAGGACGAGGAGAAGCGTACCAAGGGATGGATCGAG CGCAAGCTGGCGCCGGCGTACGACCCCGCCAAGGAGGACCGATTGACGTT CGAGCTGTTCGAGCGGGTTCTGAAGAGCAGCCCGGTGTGCGCGTGGGGCG AGTGCTTGGGCCGGCGCAACCTGAACGACAAGCTGTGATCGCAAGGCGCA CGCGCGGCGGCGGCGGCGAGGACCGATTGACGTTCGAGCTGTTCGAGCGG GTTCTGAAGAGCAGCCCGGTGTGCGCGTGGGGCGAGTGCTTGGGCCGGCG CAACCTGAACGACAAGCTGTGATCGCAAGGCGCACGCGCGGCGGCGGCGG CGAG back to top
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