mRNA_L-elsbetiae_contig16608.4469.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16608.4469.1
Unique NamemRNA_L-elsbetiae_contig16608.4469.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16608.4469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16608contigL-elsbetiae_contig16608:309..1476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size347
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16608.4469.1prot_L-elsbetiae_contig16608.4469.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16608 309..1475 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.6918316-CDS-L-elsbetiae_contig16608:308..4891622815689.6918316-CDS-L-elsbetiae_contig16608:308..489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16608 309..489 +
1691683039.8443341-CDS-L-elsbetiae_contig16608:308..4891691683039.8443341-CDS-L-elsbetiae_contig16608:308..489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16608 309..489 +
1622815689.7018244-CDS-L-elsbetiae_contig16608:669..7921622815689.7018244-CDS-L-elsbetiae_contig16608:669..792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16608 670..792 +
1691683039.8531432-CDS-L-elsbetiae_contig16608:669..7921691683039.8531432-CDS-L-elsbetiae_contig16608:669..792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16608 670..792 +
1622815689.7124388-CDS-L-elsbetiae_contig16608:1434..14751622815689.7124388-CDS-L-elsbetiae_contig16608:1434..1475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16608 1435..1475 +
1691683039.862029-CDS-L-elsbetiae_contig16608:1434..14751691683039.862029-CDS-L-elsbetiae_contig16608:1434..1475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16608 1435..1475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16608.4469.1

>prot_L-elsbetiae_contig16608.4469.1 ID=prot_L-elsbetiae_contig16608.4469.1|Name=mRNA_L-elsbetiae_contig16608.4469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
RQNFVDGCLEREKKTRESNADDGAGSGGVGVYSSAMSETDRKEAERAKAV
AAAADAADARGRRSREQQEGAGSPAKPKKKKDKDTDRSKDKKGKVKDKDG
SGGANAAAPTKLAAP
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mRNA from alignment at L-elsbetiae_contig16608:309..1476+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16608.4469.1 ID=mRNA_L-elsbetiae_contig16608.4469.1|Name=mRNA_L-elsbetiae_contig16608.4469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1168bp|location=Sequence derived from alignment at L-elsbetiae_contig16608:309..1476+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCAAAACTTTGTCGATGGTTGTTTGGAAAGGGAAAAAAAAACGAGGGA
GAGCAATGCTGACGACGGCGCTGGGTCTGGCGGGGTAGGAGTATACTCGA
GTGCCATGAGCGAGACGGACAGGAAAGAGGCCGAAAGGGCGAAGGCCGTA
GCGGCAGCCGCTGATGCGGCGGACGCAAGAGGTGTGTCTTGAGGAGAAAG
CCATCGTGTCCCCGGTCTGTTTGAAAGTAGGCGCGTCTGATTGGTATGGC
AAGCTGGTCTGGTTCGTGGCGGTCATTGTGTTCGCGGTGGACCCAAAGCA
CAGCTATTATTTCTAGTAGACGCATGTGTATACCTTGACTTACTGCTGTT
TTGATCTTCAGGTCGACGGTCTAGAGAGCAGCAGGAGGGGGCCGGCAGCC
CCGCCAAGCCGAAGAAGAAGAAGGACAAGGATACAGACAGGAGCAAGGAC
AAGAAGGGCAAAGTCAAGGACAAGGACGGCAGCGGTGGGTGCAGTGGGGC
AGGCCTAGACAAACATACACAGACATACAGGCAGGCAGGCCTATGACTAT
GGTTCGCCTGCTGTGGTCTGTTGTTTTTCCATCGTTCACCGCCTGCATGA
CTGCTGTGCGTCGTTGAAAGGAGTATGGTTGTCAAAAAAGATAAAGCAGT
TATCGCGAAGCTGCCATCAAGCGAGTGATGAGAGGCGAGATATGACATGA
GACTTGCTTCATCGGCGTGGGGGAGAGCGCTGGCGGCCGTTCAAGAGACC
CAACACATATGCATCATATCTACATACGTCCTCTCATCTTGCCACTCAGG
AACAAGCGTTGAAAGACTGGGAACTCGTTTTGCTCTTCCTCCGGAATTGT
TAAAGCAGTAGGAGCTCAAGACCTATGAGCTTGGGTGGAGACGGAGACGG
AGTGCTTGGTCCGAGAAGGGTCCCACCAAGGCCACACCCTCTCCCGCATG
ACCGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCGTGT
CTACCTCTCCCTCTCTCCATCCGTGAGTTTTCTCTCTTGGACGTTTTGCC
CTAAAAACTTCGGTTCCGTTTCTTTACTTTTTTCTTATTTTCCTCTTCTT
CGTGTTTCCCTCGTCGGTATCAGCAGGAGGCGCCAATGCGGCCGCCCCCA
CGAAACTCGCAGCTCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16608:309..1476+

>mRNA_L-elsbetiae_contig16608.4469.1 ID=mRNA_L-elsbetiae_contig16608.4469.1|Name=mRNA_L-elsbetiae_contig16608.4469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig16608:309..1476+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCAAAACTTTGTCGATGGTTGTTTGGAAAGGGAAAAAAAAACGAGGGA
GAGCAATGCTGACGACGGCGCTGGGTCTGGCGGGGTAGGAGTATACTCGA
GTGCCATGAGCGAGACGGACAGGAAAGAGGCCGAAAGGGCGAAGGCCGTA
GCGGCAGCCGCTGATGCGGCGGACGCAAGAGAGGCAAAACTTTGTCGATG
GTTGTTTGGAAAGGGAAAAAAAAACGAGGGAGAGCAATGCTGACGACGGC
GCTGGGTCTGGCGGGGTAGGAGTATACTCGAGTGCCATGAGCGAGACGGA
CAGGAAAGAGGCCGAAAGGGCGAAGGCCGTAGCGGCAGCCGCTGATGCGG
CGGACGCAAGAGGTCGACGGTCTAGAGAGCAGCAGGAGGGGGCCGGCAGC
CCCGCCAAGCCGAAGAAGAAGAAGGACAAGGATACAGACAGGAGCAAGGA
CAAGAAGGGCAAAGTCAAGGACAAGGACGGCAGCGGTCGACGGTCTAGAG
AGCAGCAGGAGGGGGCCGGCAGCCCCGCCAAGCCGAAGAAGAAGAAGGAC
AAGGATACAGACAGGAGCAAGGACAAGAAGGGCAAAGTCAAGGACAAGGA
CGGCAGCGGAGGCGCCAATGCGGCCGCCCCCACGAAACTCGCAGCTCCAG
AGGCGCCAATGCGGCCGCCCCCACGAAACTCGCAGCTCCA
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