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Homology
BLAST of mRNA_L-elsbetiae_contig16580.4455.1 vs. uniprot
Match: D7FHB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB4_ECTSI) HSP 1 Score: 159 bits (402), Expect = 1.600e-44 Identity = 81/148 (54.73%), Postives = 100/148 (67.57%), Query Frame = 1
Query: 4 LWCTMSWVTGGAPPPMENIWYESAALADHLERLATDEGLGQVSRAQWPTYPRLSQWYRIAGDLARLRDVPLLLSIREGKRYALRLTSVSALLAYYYTDYKTLCVKVHRLGIRARWTHGWSGLVSCYS-MWTLGNVSVALLGGLPLLAI 444
+W M+W+T +P PMENIWYES L L ++ G V WP++P + W+RIA D+AR RD PLLLS+ E KR+ALR+ S SALLAY +Y L V+ LGI ARWTHGWSG +SCYS +WT GNV +ALLGGL LL I
Sbjct: 141 IWEMMTWITAHSPKPMENIWYESKELMMTLHEISGQNARGAV----WPSFPGIESWFRIAKDIARQRDSPLLLSVFEFKRFALRIASSSALLAYNPGEYDNLVTSVYNLGILARWTHGWSGRLSCYSALWTPGNVGMALLGGLTLLVI 284
BLAST of mRNA_L-elsbetiae_contig16580.4455.1 vs. uniprot
Match: R7QFI2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFI2_CHOCR) HSP 1 Score: 79.3 bits (194), Expect = 2.340e-14 Identity = 49/144 (34.03%), Postives = 76/144 (52.78%), Query Frame = 1
Query: 40 PPPMENIWYESAALA----DHLERLATDEGLGQVSRAQWPTYPRLSQWYRIAGDLARLRDVPLLLSIREGKRYALRLTSVSALLAYYYTDYKTLCVKVHRLGIRARWTHGWSGLVSCYS-MWTLGNVSVALLGGLPLLAILGGG 456
P + +W+ +A D+ + L +E + V W S W +IA D++ P+ L+ +A L++ S +L Y YK L ++H G+ ARWT+GWSGL+SC+S +WT+ + A+L GL LLAI G G
Sbjct: 307 PNRISILWHNTARFEKVYEDNRKALIEEEEIPNVVLPTW------SSWVQIAQDISTNLCRPVYLNGSLLTNFAAELSAASVILLRYPEKYKRLVEQIHMDGLNARWTYGWSGLLSCFSALWTMERIYFAMLNGLSLLAISGNG 444
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-03_004090.1 |
| Exons | 4 |
| Model size | 461 |
| Cds size | 294 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815687.970988-UTR-L-elsbetiae_contig16580:1824..1848 | 1622815687.970988-UTR-L-elsbetiae_contig16580:1824..1848 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig16580 1825..1848 + |
| 1691683038.6470022-UTR-L-elsbetiae_contig16580:1824..1848 | 1691683038.6470022-UTR-L-elsbetiae_contig16580:1824..1848 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig16580 1825..1848 + |
| 1622815687.983653-UTR-L-elsbetiae_contig16580:2241..2384 | 1622815687.983653-UTR-L-elsbetiae_contig16580:2241..2384 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig16580 2242..2384 + |
| 1691683038.6566238-UTR-L-elsbetiae_contig16580:2241..2384 | 1691683038.6566238-UTR-L-elsbetiae_contig16580:2241..2384 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig16580 2242..2384 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815687.999854-CDS-L-elsbetiae_contig16580:2384..2387 | 1622815687.999854-CDS-L-elsbetiae_contig16580:2384..2387 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16580 2385..2387 + |
| 1691683038.6655536-CDS-L-elsbetiae_contig16580:2384..2387 | 1691683038.6655536-CDS-L-elsbetiae_contig16580:2384..2387 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16580 2385..2387 + |
| 1622815688.0098128-CDS-L-elsbetiae_contig16580:2829..3045 | 1622815688.0098128-CDS-L-elsbetiae_contig16580:2829..3045 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16580 2830..3045 + |
| 1691683038.6748774-CDS-L-elsbetiae_contig16580:2829..3045 | 1691683038.6748774-CDS-L-elsbetiae_contig16580:2829..3045 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16580 2830..3045 + |
| 1622815688.0196304-CDS-L-elsbetiae_contig16580:3451..3526 | 1622815688.0196304-CDS-L-elsbetiae_contig16580:3451..3526 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16580 3452..3526 + |
| 1691683038.685236-CDS-L-elsbetiae_contig16580:3451..3526 | 1691683038.685236-CDS-L-elsbetiae_contig16580:3451..3526 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig16580 3452..3526 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig16580.4455.1 >prot_L-elsbetiae_contig16580.4455.1 ID=prot_L-elsbetiae_contig16580.4455.1|Name=mRNA_L-elsbetiae_contig16580.4455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MVSHCRGSGPPSRRASSLEHPRGETLRPQAYVGVCPVGLLLHRLQDALRE
GASAGYQGPLDARLVRPRIVLQHVDLGKRERCAARRASSAGHPGRRV* back to topmRNA from alignment at L-elsbetiae_contig16580:1825..3526+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig16580.4455.1 ID=mRNA_L-elsbetiae_contig16580.4455.1|Name=mRNA_L-elsbetiae_contig16580.4455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1702bp|location=Sequence derived from alignment at L-elsbetiae_contig16580:1825..3526+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCTGTGGTGTACCATGAGTTGGGTAAGCCAGAGATTATGCGTCGCCGA
CCTCACGATTGTGTCTAAATATTGCCTCAAGTTGACTGACACCACGAGCA
GAGCTACCAAGCTCGTCCACCAAATAATTGCAATATAGGCAGCGTCAATA
TATGCAGCTCGAAACCCGTGAGCACACAAGTTTCTTCACCACTCACTCGA
GCCGAAACCCGTGAGCACACAAGTTTCTTGACCACTCGCTCACCTCGACC
ACGAACAGCCTTGTACCCCAGCCCCCATTTTGTTGTTGAACGATTTGCTG
CGAGCTGCCATCGCAATGGGGCTGTTTTCGGTGCGCTATACTATTGGCAC
CGCTGATTAACGCCACCGTACCGCCCGATCGTCCCGTGCTACCACACACC
CTCCCTCCCCAACAAAGGTGACAGGCGGTGCTCCGCCCCCCATGGAAAAC
ATTTGGTACGAGTCTGCTGCTCTTGCGGATCACCTTGAACGACTCGCCAC
TGACGAGGGCTTGGGTCAGGTTTCCCGCGCCCAGTGGCCCACCTACCCAA
GACTCTCGCAATGGTATGTACGCTGTCGGTTCCACTTTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCGATATCGGGGGTCTGGT
TGGCGATGCTACTTTAGAGCTCTTCAAAATCCACCTGTGTAAATTCGAGG
TCGAGAGGTTCCTCTATGGTTTGTGGCTTCCAACGTATATCGGTCTTAGA
AGCCCGACTTTCTGGTGAACCTGCGCGCGCTTCAATCGAATTCAAAACAC
TTTACCGAAACCGCAGCAACAATCGTCGCTCAGACGCTGTTGCCTTTGAC
CCGCGTTGCCGTTGCCAAGCTCAATGCTGTCACTCTAGTATCAGAGAAAG
TAAAGAACGCCAAGAGAATAGCAAAGGGTGTGCTGTGCTGTAGCATGAAC
TGGTGTTGAACGATATGCACCCTGAGGGGACTTCCTTCTTCCCTCGTCCA
AATAGGTATCGCATTGCCGGGGATCTGGCCCGCCTTCGAGACGTGCCTCT
TCTCTTGAGCATCCGCGAGGGGAAACGCTACGCCCTCAGGCTTACGTCGG
TGTCTGCCCTGTTGGCCTACTACTACACCGACTACAAGACGCTCTGCGTG
AAGGTGCATCGGCTGGGTATCAGGGCCCGCTGGACGCACGGCTGGTCAGG
CCTCGTATCGTGCTACAGCATGTATGTGGTAAGGATCTGTTTTTTGTTTT
TCCTTGGATCTCTCATGCTCAAAGCGTGAACGGAGATACTGCACTAAACA
GTCCACGAGAGAAACCGAACTGGCCGCAGTACGTTGGCTCGTGGCAATGG
AAGAAAACACCGCAAACAAATCTTGGATGATGTAGACGACGTATGTGTGC
TTCAGGACCCCCTCATGTAGTACATAAAGGTGTTGTGGCTACCCTGGACA
GCGCGAAACCGGTTACCCTAGTTTTCGGATTATTCTTCATGGTGAGTCTT
GTTCTTGCTTTTATTTGTCGCCTCGAAGAATCCATGTATGGCCTGTCTTC
GGGTAGAAGCAGTGGGCTCTTCACGTTTTCCTGGTGCGGATAATTCGTTG
CGTTTCTCTTGGTTTGGTGGATGAAAGGTGGACCTTGGGAAACGTGAGCG
TTGCGCTGCTCGGCGGGCTTCCTCTGCTGGCCATCCTGGGCGGCGGGTCT
GA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig16580:1825..3526+ >mRNA_L-elsbetiae_contig16580.4455.1 ID=mRNA_L-elsbetiae_contig16580.4455.1|Name=mRNA_L-elsbetiae_contig16580.4455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig16580:1825..3526+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGTATCGCATTGCCGGGGATCTGGCCCGCCTTCGAGACGTGCCTC
TTCTCTTGAGCATCCGCGAGGGGAAACGCTACGCCCTCAGGCTTACGTCG
GTGTCTGCCCTGTTGGCCTACTACTACACCGACTACAAGACGCTCTGCGT
GAAGGTGCATCGGCTGGGTATCAGGGCCCGCTGGACGCACGGCTGGTCAG
GCCTCGTATCGTGCTACAGCATGTATCGCATTGCCGGGGATCTGGCCCGC
CTTCGAGACGTGCCTCTTCTCTTGAGCATCCGCGAGGGGAAACGCTACGC
CCTCAGGCTTACGTCGGTGTCTGCCCTGTTGGCCTACTACTACACCGACT
ACAAGACGCTCTGCGTGAAGGTGCATCGGCTGGGTATCAGGGCCCGCTGG
ACGCACGGCTGGTCAGGCCTCGTATCGTGCTACAGCATGTGGACCTTGGG
AAACGTGAGCGTTGCGCTGCTCGGCGGGCTTCCTCTGCTGGCCATCCTGG
GCGGCGGGTCTGAGTGGACCTTGGGAAACGTGAGCGTTGCGCTGCTCGGC
GGGCTTCCTCTGCTGGCCATCCTGGGCGGCGGGTCTGA back to top
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