mRNA_L-elsbetiae_contig16570.4450.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16570.4450.1
Unique NamemRNA_L-elsbetiae_contig16570.4450.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16570.4450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16570contigL-elsbetiae_contig16570:2087..2494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815687.365064-UTR-L-elsbetiae_contig16570:2086..21821622815687.365064-UTR-L-elsbetiae_contig16570:2086..2182Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16570 2087..2182 +
1691683038.2199817-UTR-L-elsbetiae_contig16570:2086..21821691683038.2199817-UTR-L-elsbetiae_contig16570:2086..2182Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16570 2087..2182 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815687.3769062-CDS-L-elsbetiae_contig16570:2182..24941622815687.3769062-CDS-L-elsbetiae_contig16570:2182..2494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16570 2183..2494 +
1691683038.2382076-CDS-L-elsbetiae_contig16570:2182..24941691683038.2382076-CDS-L-elsbetiae_contig16570:2182..2494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16570 2183..2494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16570.4450.1prot_L-elsbetiae_contig16570.4450.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16570 2183..2494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16570.4450.1

>prot_L-elsbetiae_contig16570.4450.1 ID=prot_L-elsbetiae_contig16570.4450.1|Name=mRNA_L-elsbetiae_contig16570.4450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MDVDARSSASNSVYRALPPRNEPISPRQQRHEHALVPQPPEKQSRSSSIR
QESRRTIARRQEAIIKNILKHKWKNKEPRDESALDPSTAVPSAPSQRWCR
MMRQ
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mRNA from alignment at L-elsbetiae_contig16570:2087..2494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16570.4450.1 ID=mRNA_L-elsbetiae_contig16570.4450.1|Name=mRNA_L-elsbetiae_contig16570.4450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig16570:2087..2494+ (Laminarionema elsbetiae ELsaHSoW15)
CCCATGACCCGTTTTTGATTCGAGCGACGGTGTGCAGACGCACGCACGCG
CCTCTTATTGTCTCCGGTGGAACCTCGGTGGCAGGCAGAAAGAAGGATGG
ACGTTGATGCACGTAGCAGCGCTTCGAACAGCGTATACAGAGCTCTTCCT
CCTCGCAACGAGCCCATAAGCCCTCGCCAACAACGGCATGAACATGCTCT
CGTGCCGCAGCCGCCAGAGAAACAAAGCCGTTCCTCGAGCATCCGGCAAG
AGAGCCGTCGAACGATAGCACGACGACAGGAGGCCATCATCAAAAACATC
CTCAAACACAAGTGGAAGAACAAGGAGCCGCGCGACGAATCTGCCCTAGA
CCCGTCAACAGCCGTCCCGTCGGCTCCATCTCAGCGGTGGTGTAGGATGA
TGCGACAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16570:2087..2494+

>mRNA_L-elsbetiae_contig16570.4450.1 ID=mRNA_L-elsbetiae_contig16570.4450.1|Name=mRNA_L-elsbetiae_contig16570.4450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig16570:2087..2494+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGTTGATGCACGTAGCAGCGCTTCGAACAGCGTATACAGAGCTCT
TCCTCCTCGCAACGAGCCCATAAGCCCTCGCCAACAACGGCATGAACATG
CTCTCGTGCCGCAGCCGCCAGAGAAACAAAGCCGTTCCTCGAGCATCCGG
CAAGAGAGCCGTCGAACGATAGCACGACGACAGGAGGCCATCATCAAAAA
CATCCTCAAACACAAGTGGAAGAACAAGGAGCCGCGCGACGAATCTGCCC
TAGACCCGTCAACAGCCGTCCCGTCGGCTCCATCTCAGCGGTGGTGTAGG
ATGATGCGACAGATGGACGTTGATGCACGTAGCAGCGCTTCGAACAGCGT
ATACAGAGCTCTTCCTCCTCGCAACGAGCCCATAAGCCCTCGCCAACAAC
GGCATGAACATGCTCTCGTGCCGCAGCCGCCAGAGAAACAAAGCCGTTCC
TCGAGCATCCGGCAAGAGAGCCGTCGAACGATAGCACGACGACAGGAGGC
CATCATCAAAAACATCCTCAAACACAAGTGGAAGAACAAGGAGCCGCGCG
ACGAATCTGCCCTAGACCCGTCAACAGCCGTCCCGTCGGCTCCATCTCAG
CGGTGGTGTAGGATGATGCGACAG
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