mRNA_L-elsbetiae_contig16568.4447.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16568.4447.1
Unique NamemRNA_L-elsbetiae_contig16568.4447.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16568.4447.1 vs. uniprot
Match: A0A6H5K229_9PHAE (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K229_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 7.160e-14
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 3 
Query:    3 AMLINSANLMGWGSEPIRYRGFGRIHLEAGMPLNGDGDMALFVDDMAE--IGADDTRSVLLDL 185
            A+LINSANLMG  S+P  YRGFGRIHLE GMPL G+GD+ALFV D  +  I  D  +  L D+
Sbjct:  781 ALLINSANLMGESSQPDAYRGFGRIHLEQGMPLEGEGDLALFVADALDTSIAEDTVQEYLFDV 843
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BLAST of mRNA_L-elsbetiae_contig16568.4447.1 vs. uniprot
Match: D8LQI1_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI1_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 9.780e-14
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:    3 AMLINSANLMGWGSEPIRYRGFGRIHLEAGMPLNGDGDMALFVDDMAE 146
            AMLINSAN+MG G+EP   RGFGRIHLEAGMPL G GDMALFV D ++
Sbjct:  780 AMLINSANVMGGGNEPDTERGFGRIHLEAGMPLGGAGDMALFVADSSD 827
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BLAST of mRNA_L-elsbetiae_contig16568.4447.1 vs. uniprot
Match: A0A6H5L2G3_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G3_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.390e-13
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 3 
Query:    3 AMLINSANLMGWGSEPIRYRGFGRIHLEAGMPLNGDGDMALFVDDMAE 146
            AMLINSAN+MG G+EP   RGFGRIHLEAGMPL G GDM LFV D ++
Sbjct:  469 AMLINSANVMGGGNEPDSERGFGRIHLEAGMPLGGAGDMVLFVADSSD 516
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BLAST of mRNA_L-elsbetiae_contig16568.4447.1 vs. uniprot
Match: D8LNG6_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG6_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.660e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 3 
Query:    3 AMLINSANLMGWGSEPIRYRGFGRIHLEAGMPLNGDGDMALFVDD 137
            A+LINSANLMG  SEP  +RGFGR+HLEAGMPL G+GD+ LFV D
Sbjct:  745 ALLINSANLMGGSSEPDGFRGFGRVHLEAGMPLEGEGDLVLFVAD 789
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BLAST of mRNA_L-elsbetiae_contig16568.4447.1 vs. uniprot
Match: A0A2I6U1R2_SACJA (Subtilisin (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1R2_SACJA)

HSP 1 Score: 71.2 bits (173), Expect = 6.350e-13
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 3 
Query:    3 AMLINSANLMGWGSEPIRYRGFGRIHLEAGMPLNGDGDMALFVDD 137
            A+LINSANLMG  SEP  YRGFGRIHLE GMPL+G+G +ALFV D
Sbjct:  743 ALLINSANLMGGSSEPDGYRGFGRIHLEMGMPLDGEGSLALFVAD 787
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BLAST of mRNA_L-elsbetiae_contig16568.4447.1 vs. uniprot
Match: A0A6H5JKA8_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.190e-12
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 3 
Query:    3 AMLINSANLMGWGSEPIRYRGFGRIHLEAGMPLNGDGDMALFVDDMA 143
            AMLINSANLMG  +EP   RGFGR+HLEAGMPL G+GD ALFV D A
Sbjct:  903 AMLINSANLMGGSAEPDGLRGFGRVHLEAGMPLAGEGDNALFVADSA 949
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BLAST of mRNA_L-elsbetiae_contig16568.4447.1 vs. uniprot
Match: A0A6H5K365_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K365_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.210e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 3 
Query:    3 AMLINSANLMGWGSEPIRYRGFGRIHLEAGMPLNGDGDMALFVDD 137
            A+LINSANLMG  SEP  +RGFGR+HLEAGMPL G+G++ LFV D
Sbjct:  506 ALLINSANLMGGSSEPDGFRGFGRVHLEAGMPLEGEGNLVLFVAD 550
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BLAST of mRNA_L-elsbetiae_contig16568.4447.1 vs. uniprot
Match: A0A2I6U1S5_SACJA (Subtilisin n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1S5_SACJA)

HSP 1 Score: 69.7 bits (169), Expect = 2.220e-12
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 3 
Query:    3 AMLINSANLMGWGSEPIRYRGFGRIHLEAGMPLNGDGDMALFVDD 137
            A+LINSANLMG  SEP  +RGFGRIHLE GMPL+G+G +ALFV D
Sbjct:  739 ALLINSANLMGGSSEPDGFRGFGRIHLEMGMPLDGEGSLALFVAD 783
[Close]
BLAST of mRNA_L-elsbetiae_contig16568.4447.1 vs. uniprot
Match: A0A6H5JQT4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT4_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.040e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 3 
Query:    3 AMLINSANLMGWGSEPIRYRGFGRIHLEAGMPLNGDGDMALFVDD 137
            A++INSANLMG  SEP   RGFGRIHLEAGMPL G+G +ALFV D
Sbjct:  808 ALMINSANLMGGSSEPDGSRGFGRIHLEAGMPLRGEGSLALFVSD 852
[Close]
BLAST of mRNA_L-elsbetiae_contig16568.4447.1 vs. uniprot
Match: D8LNG4_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG4_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 4.120e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 3 
Query:    3 AMLINSANLMGWGSEPIRYRGFGRIHLEAGMPLNGDGDMALFVDD 137
            A++INSANLMG  SEP   RGFGRIHLEAGMPL G+G +ALFV D
Sbjct:  498 ALMINSANLMGESSEPNGSRGFGRIHLEAGMPLGGEGSLALFVSD 542
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16568.4447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5K229_9PHAE7.160e-1460.32Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A... [more]
D8LQI1_ECTSI9.780e-1475.00Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5L2G3_9PHAE3.390e-1372.92Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LNG6_ECTSI4.660e-1373.33Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A2I6U1R2_SACJA6.350e-1375.56Subtilisin (Fragment) n=1 Tax=Saccharina japonica ... [more]
A0A6H5JKA8_9PHAE1.190e-1274.47Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A6H5K365_9PHAE2.210e-1271.11Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A2I6U1S5_SACJA2.220e-1273.33Subtilisin n=1 Tax=Saccharina japonica TaxID=88149... [more]
A0A6H5JQT4_9PHAE3.040e-1273.33Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LNG4_ECTSI4.120e-1273.33Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16568contigL-elsbetiae_contig16568:103..296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue2.5e-10
Seed eggNOG ortholog2880.D8LNG5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGsCOG1404@1,KOG1114@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size194
Cds size189
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.9640815-UTR-L-elsbetiae_contig16568:102..1071622815686.9640815-UTR-L-elsbetiae_contig16568:102..107Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16568 103..107 +
1691683037.928984-UTR-L-elsbetiae_contig16568:102..1071691683037.928984-UTR-L-elsbetiae_contig16568:102..107Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16568 103..107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.9742038-CDS-L-elsbetiae_contig16568:107..2961622815686.9742038-CDS-L-elsbetiae_contig16568:107..296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16568 108..296 +
1691683037.9410803-CDS-L-elsbetiae_contig16568:107..2961691683037.9410803-CDS-L-elsbetiae_contig16568:107..296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16568 108..296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16568.4447.1prot_L-elsbetiae_contig16568.4447.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16568 108..296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16568.4447.1

>prot_L-elsbetiae_contig16568.4447.1 ID=prot_L-elsbetiae_contig16568.4447.1|Name=mRNA_L-elsbetiae_contig16568.4447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=63bp
MLINSANLMGWGSEPIRYRGFGRIHLEAGMPLNGDGDMALFVDDMAEIGA
DDTRSVLLDLRPG
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mRNA from alignment at L-elsbetiae_contig16568:103..296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16568.4447.1 ID=mRNA_L-elsbetiae_contig16568.4447.1|Name=mRNA_L-elsbetiae_contig16568.4447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=194bp|location=Sequence derived from alignment at L-elsbetiae_contig16568:103..296+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCCATGCTGATCAACAGCGCCAACCTCATGGGATGGGGAAGCGAGCCC
ATCAGGTACCGTGGCTTCGGAAGGATCCACCTAGAGGCTGGTATGCCTCT
AAACGGGGATGGCGATATGGCCCTGTTCGTGGACGATATGGCGGAGATTG
GAGCGGATGACACAAGGAGCGTCCTGCTGGACTTGAGACCTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16568:103..296+

>mRNA_L-elsbetiae_contig16568.4447.1 ID=mRNA_L-elsbetiae_contig16568.4447.1|Name=mRNA_L-elsbetiae_contig16568.4447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig16568:103..296+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGATCAACAGCGCCAACCTCATGGGATGGGGAAGCGAGCCCATCAG
GTACCGTGGCTTCGGAAGGATCCACCTAGAGGCTGGTATGCCTCTAAACG
GGGATGGCGATATGGCCCTGTTCGTGGACGATATGGCGGAGATTGGAGCG
GATGACACAAGGAGCGTCCTGCTGGACTTGAGACCTGGCATGCTGATCAA
CAGCGCCAACCTCATGGGATGGGGAAGCGAGCCCATCAGGTACCGTGGCT
TCGGAAGGATCCACCTAGAGGCTGGTATGCCTCTAAACGGGGATGGCGAT
ATGGCCCTGTTCGTGGACGATATGGCGGAGATTGGAGCGGATGACACAAG
GAGCGTCCTGCTGGACTTGAGACCTGGC
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