mRNA_L-elsbetiae_contig16562.4445.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16562.4445.1
Unique NamemRNA_L-elsbetiae_contig16562.4445.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16562.4445.1 vs. uniprot
Match: A0A6H5KVD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD8_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 5.480e-28
Identity = 93/158 (58.86%), Postives = 97/158 (61.39%), Query Frame = 1 
Query:    1 EEISIAEGDWQSVFRLLKDIGLFDPAAPDAGGANNTPLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXPTPGAGQGRQDHDPAIMAYLTKVLAFPEPDAARALSSTSGNDLAEALDYLCLH 474
            EEISIAEGDWQSVFRLLKDIGLFD A PD G   N+   S   XXXXXXXX                               XXXXXXX XXXXXXXX       P     Q  Q HDPAIM+YLTK+LAFPE DAA ALS+TSGNDLAEALDYLCLH
Sbjct:  108 EEISIAEGDWQSVFRLLKDIGLFDSAGPDGG---NSSSGSTLSXXXXXXXXRNTTSPGDPGGPNTATGPGASSRQTSAEPAAXXXXXXXXXXXXXXXXPSNLPTAPATSQTQQEQQHDPAIMSYLTKLLAFPEADAATALSNTSGNDLAEALDYLCLH 262
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BLAST of mRNA_L-elsbetiae_contig16562.4445.1 vs. uniprot
Match: D7G1J3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J3_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.540e-23
Identity = 130/158 (82.28%), Postives = 136/158 (86.08%), Query Frame = 1 
Query:    1 EEISIAEGDWQSVFRLLKDIGLFDPAAPDAGGANNTPLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXPTPGAGQGRQDHDPAIMAYLTKVLAFPEPDAARALSSTSGNDLAEALDYLCLH 474
            EEISIAEGDWQSVFRLLKDIGLFD A PD  G N++  S+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX         Q HDPAIM+YLTK+LAFPE DAA ALS+TSGNDLAEALDYLCLH
Sbjct:  131 EEISIAEGDWQSVFRLLKDIGLFDSAGPD--GVNSSSGSTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXQQHDPAIMSYLTKLLAFPEADAAAALSNTSGNDLAEALDYLCLH 282
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16562.4445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVD8_9PHAE5.480e-2858.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J3_ECTSI1.540e-2382.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16562contigL-elsbetiae_contig16562:2271..3318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size475
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.85349-CDS-L-elsbetiae_contig16562:2270..27001622815686.85349-CDS-L-elsbetiae_contig16562:2270..2700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16562 2271..2700 -
1691683037.875698-CDS-L-elsbetiae_contig16562:2270..27001691683037.875698-CDS-L-elsbetiae_contig16562:2270..2700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16562 2271..2700 -
1622815686.8650916-CDS-L-elsbetiae_contig16562:3274..33181622815686.8650916-CDS-L-elsbetiae_contig16562:3274..3318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16562 3275..3318 -
1691683037.8873963-CDS-L-elsbetiae_contig16562:3274..33181691683037.8873963-CDS-L-elsbetiae_contig16562:3274..3318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16562 3275..3318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16562.4445.1prot_L-elsbetiae_contig16562.4445.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16562 2271..3318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16562.4445.1

>prot_L-elsbetiae_contig16562.4445.1 ID=prot_L-elsbetiae_contig16562.4445.1|Name=mRNA_L-elsbetiae_contig16562.4445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
EEISIAEGDWQSVFRLLKDIGLFDPAAPDAGGANNTPLSSTGPPPPGQTT
AAARRGGPAPPSSPRLGQGPPQTSSSAAAIGAPPATAQQPSSSSSPSPSS
PPPTPPTPGAGQGRQDHDPAIMAYLTKVLAFPEPDAARALSSTSGNDLAE
ALDYLCLH
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mRNA from alignment at L-elsbetiae_contig16562:2271..3318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16562.4445.1 ID=mRNA_L-elsbetiae_contig16562.4445.1|Name=mRNA_L-elsbetiae_contig16562.4445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1048bp|location=Sequence derived from alignment at L-elsbetiae_contig16562:2271..3318- (Laminarionema elsbetiae ELsaHSoW15)
GAAGAGATCAGCATCGCGGAGGGGGACTGGCAGAGCGTTTTTAGGTATGT
ATGTATGTATGTACGTGTCGTTTGGCGGAAGAGAGGGGCCTCTGGCTTGG
TTTCCGCCTTCGCCGCCCGTCTTCATCCCATCAGCTAGGATACGGCCGGA
GGGACGGGGGGGGGGGGGTTCTAGCTTTATATTGTGGCTTCAAAGGCCGT
GTTGGTGCCAAGCCTGACGACCCGCCCGACAGCCCTCATCCGCAAACTAG
CTTGGCCGGTATCCGGGTTGGATGCGGCGGCCGTTTTCTGGCCGCTTGCT
GATGCTACCCGTCCAAGCAGCGGGCTACCCTACCCCCAACGACGCTGAAG
GGCCTGTTTTCTCGCCCCCCCCCCCACAGCAGCTGGAACACAGCAAGCGG
CCCGACAGTATTTTCAACATATTTTCTACGACGTATCTACGTAGTCCATC
TCTCTGTCTATCTATCCATCTATCTATCTATCTATCTATCTATCTATTTT
TTTATCGATAGGTTCGGGATTGGTGGTCAGTAGTCACCATACTAAGGCAA
GCCATATGTCGTTGACCCCCCCCCCCCCCCCCCCCCCATTATCCTTCCCA
CTGCCCTGAAAACGCCAGGCTTCTGAAAGATATCGGCCTCTTCGACCCTG
CTGCCCCCGATGCCGGAGGGGCCAACAATACCCCCCTTTCCTCCACGGGG
CCCCCACCACCGGGGCAAACGACCGCCGCGGCCCGGCGCGGCGGTCCCGC
TCCTCCCTCCTCCCCGCGGCTAGGACAAGGACCCCCGCAGACCTCCTCCA
GCGCCGCCGCCATCGGCGCACCCCCCGCAACGGCCCAGCAGCCTTCGTCG
TCGTCATCGCCGTCCCCGTCGTCCCCGCCCCCTACTCCGCCCACGCCCGG
GGCGGGGCAAGGACGGCAGGACCACGACCCCGCGATCATGGCCTACCTCA
CCAAGGTGCTGGCCTTCCCGGAGCCCGACGCGGCGCGCGCCCTGTCGAGC
ACCTCCGGGAACGACCTCGCCGAGGCACTAGACTACCTCTGCCTGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16562:2271..3318-

>mRNA_L-elsbetiae_contig16562.4445.1 ID=mRNA_L-elsbetiae_contig16562.4445.1|Name=mRNA_L-elsbetiae_contig16562.4445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig16562:2271..3318- (Laminarionema elsbetiae ELsaHSoW15)
GAAGAGATCAGCATCGCGGAGGGGGACTGGCAGAGCGTTTTTAGGAAGAG
ATCAGCATCGCGGAGGGGGACTGGCAGAGCGTTTTTAGGCTTCTGAAAGA
TATCGGCCTCTTCGACCCTGCTGCCCCCGATGCCGGAGGGGCCAACAATA
CCCCCCTTTCCTCCACGGGGCCCCCACCACCGGGGCAAACGACCGCCGCG
GCCCGGCGCGGCGGTCCCGCTCCTCCCTCCTCCCCGCGGCTAGGACAAGG
ACCCCCGCAGACCTCCTCCAGCGCCGCCGCCATCGGCGCACCCCCCGCAA
CGGCCCAGCAGCCTTCGTCGTCGTCATCGCCGTCCCCGTCGTCCCCGCCC
CCTACTCCGCCCACGCCCGGGGCGGGGCAAGGACGGCAGGACCACGACCC
CGCGATCATGGCCTACCTCACCAAGGTGCTGGCCTTCCCGGAGCCCGACG
CGGCGCGCGCCCTGTCGAGCACCTCCGGGAACGACCTCGCCGAGGCACTA
GACTACCTCTGCCTGCACGCTTCTGAAAGATATCGGCCTCTTCGACCCTG
CTGCCCCCGATGCCGGAGGGGCCAACAATACCCCCCTTTCCTCCACGGGG
CCCCCACCACCGGGGCAAACGACCGCCGCGGCCCGGCGCGGCGGTCCCGC
TCCTCCCTCCTCCCCGCGGCTAGGACAAGGACCCCCGCAGACCTCCTCCA
GCGCCGCCGCCATCGGCGCACCCCCCGCAACGGCCCAGCAGCCTTCGTCG
TCGTCATCGCCGTCCCCGTCGTCCCCGCCCCCTACTCCGCCCACGCCCGG
GGCGGGGCAAGGACGGCAGGACCACGACCCCGCGATCATGGCCTACCTCA
CCAAGGTGCTGGCCTTCCCGGAGCCCGACGCGGCGCGCGCCCTGTCGAGC
ACCTCCGGGAACGACCTCGCCGAGGCACTAGACTACCTCTGCCTGCAC
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