mRNA_L-elsbetiae_contig16562.4444.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16562.4444.1
Unique NamemRNA_L-elsbetiae_contig16562.4444.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16562.4444.1 vs. uniprot
Match: D7G1J3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J3_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.480e-24
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:   31 SSVIEVASSADWKVEHRVLSLVKMGFKRKEAEAALSSSPSGEVMGHDTLIHLLEPLRP 204
            SS IEVASSADWKVEHRVLSLVKMGFKR+EAEAALS+SPSGEVMGHDTL  LLEP RP
Sbjct:  328 SSAIEVASSADWKVEHRVLSLVKMGFKREEAEAALSASPSGEVMGHDTLTRLLEPFRP 385
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16562.4444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1J3_ECTSI2.480e-2489.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16562contigL-elsbetiae_contig16562:1399..2136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.800003-CDS-L-elsbetiae_contig16562:1398..16261622815686.800003-CDS-L-elsbetiae_contig16562:1398..1626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16562 1399..1626 -
1691683037.8418572-CDS-L-elsbetiae_contig16562:1398..16261691683037.8418572-CDS-L-elsbetiae_contig16562:1398..1626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16562 1399..1626 -
1622815686.8143756-CDS-L-elsbetiae_contig16562:2091..21361622815686.8143756-CDS-L-elsbetiae_contig16562:2091..2136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16562 2092..2136 -
1691683037.8581202-CDS-L-elsbetiae_contig16562:2091..21361691683037.8581202-CDS-L-elsbetiae_contig16562:2091..2136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16562 2092..2136 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16562.4444.1prot_L-elsbetiae_contig16562.4444.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16562 1399..2136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16562.4444.1

>prot_L-elsbetiae_contig16562.4444.1 ID=prot_L-elsbetiae_contig16562.4444.1|Name=mRNA_L-elsbetiae_contig16562.4444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
GRKVLAAPSGSSVIEVASSADWKVEHRVLSLVKMGFKRKEAEAALSSSPS
GEVMGHDTLIHLLEPLRPPTSSSSPAPPPSGGDPGEGSSST
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mRNA from alignment at L-elsbetiae_contig16562:1399..2136-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16562.4444.1 ID=mRNA_L-elsbetiae_contig16562.4444.1|Name=mRNA_L-elsbetiae_contig16562.4444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig16562:1399..2136- (Laminarionema elsbetiae ELsaHSoW15)
GGTAGGAAGGTTCTCGCTGCCCCGTCTGGTTCATCGGTGATCGAGGTGAG
TGGGTGGATATATATATACTCCTATATATTTTGGGGTCAGGCCTCGGGAT
ATTGTGGGGCATCTAAATACTCTTGTAAAAACGACGAGCCCGGACTGATA
ATATCCCGTGGCGTGAGTACCCGGGACGCCTGGTGTGCCCACTGGTATAG
GTACATACACAATTTACCAACCTAAAAAAAAATAAAAAGTACATACATAC
ATCCTGGTCCGGGGTCGTCCTCCTGTGTACACCTTGCACACCCTCTAACC
GGCCGTATGTCTGTACCTTTGTTTGCTGGTACTGTAAATATAGACTTCGT
ATAACCATGAACCTAGAAAGCACTTTATATGTACCTACGCCATTTCCCCG
GTTGCCCTCCTAAGCTTGCACACGTATTTTAACGCGTGGCACCTGTGGCC
GTGACCCCCGGCCCGGCGCCTCAACCCCGATCGATCGATCGATCGATCGA
TCGTGCGCAGGTCGCGAGCAGCGCCGACTGGAAGGTGGAGCACCGCGTGC
TGTCCCTGGTGAAGATGGGTTTCAAGCGTAAAGAGGCGGAGGCCGCGCTG
TCTTCGTCGCCCTCCGGGGAGGTCATGGGGCACGACACCCTCATCCACCT
GCTGGAGCCACTGCGCCCCCCCACCTCTTCCTCTTCTCCCGCTCCTCCGC
CTTCTGGGGGAGATCCCGGGGAAGGGTCCTCGTCGACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16562:1399..2136-

>mRNA_L-elsbetiae_contig16562.4444.1 ID=mRNA_L-elsbetiae_contig16562.4444.1|Name=mRNA_L-elsbetiae_contig16562.4444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig16562:1399..2136- (Laminarionema elsbetiae ELsaHSoW15)
GGTAGGAAGGTTCTCGCTGCCCCGTCTGGTTCATCGGTGATCGAGGGTAG
GAAGGTTCTCGCTGCCCCGTCTGGTTCATCGGTGATCGAGGTCGCGAGCA
GCGCCGACTGGAAGGTGGAGCACCGCGTGCTGTCCCTGGTGAAGATGGGT
TTCAAGCGTAAAGAGGCGGAGGCCGCGCTGTCTTCGTCGCCCTCCGGGGA
GGTCATGGGGCACGACACCCTCATCCACCTGCTGGAGCCACTGCGCCCCC
CCACCTCTTCCTCTTCTCCCGCTCCTCCGCCTTCTGGGGGAGATCCCGGG
GAAGGGTCCTCGTCGACAGTCGCGAGCAGCGCCGACTGGAAGGTGGAGCA
CCGCGTGCTGTCCCTGGTGAAGATGGGTTTCAAGCGTAAAGAGGCGGAGG
CCGCGCTGTCTTCGTCGCCCTCCGGGGAGGTCATGGGGCACGACACCCTC
ATCCACCTGCTGGAGCCACTGCGCCCCCCCACCTCTTCCTCTTCTCCCGC
TCCTCCGCCTTCTGGGGGAGATCCCGGGGAAGGGTCCTCGTCGACA
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