mRNA_L-elsbetiae_contig16560.4443.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16560.4443.1
Unique NamemRNA_L-elsbetiae_contig16560.4443.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16560.4443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16560contigL-elsbetiae_contig16560:1905..2219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.763411-CDS-L-elsbetiae_contig16560:1904..22191622815686.763411-CDS-L-elsbetiae_contig16560:1904..2219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16560 1905..2219 +
1691683037.8298943-CDS-L-elsbetiae_contig16560:1904..22191691683037.8298943-CDS-L-elsbetiae_contig16560:1904..2219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16560 1905..2219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16560.4443.1prot_L-elsbetiae_contig16560.4443.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16560 1905..2219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16560.4443.1

>prot_L-elsbetiae_contig16560.4443.1 ID=prot_L-elsbetiae_contig16560.4443.1|Name=mRNA_L-elsbetiae_contig16560.4443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
EETSSESSAKSESPAGSGSPAGTTAAAVAAVAAVVVETASSDLTDGNERG
CGESDQAAGATPRSGNQRGTEAENCGEGSRGCGGDEMEEGRGRRRWRPSG
GPSEA
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mRNA from alignment at L-elsbetiae_contig16560:1905..2219+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16560.4443.1 ID=mRNA_L-elsbetiae_contig16560.4443.1|Name=mRNA_L-elsbetiae_contig16560.4443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=315bp|location=Sequence derived from alignment at L-elsbetiae_contig16560:1905..2219+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGAGACCTCCTCCGAGAGCTCCGCAAAGAGTGAGAGCCCCGCCGGAAG
TGGCAGCCCCGCAGGGACGACGGCGGCGGCGGTGGCGGCAGTGGCGGCAG
TTGTGGTAGAGACGGCATCGTCCGATCTTACCGACGGCAATGAGCGCGGC
TGCGGCGAGAGTGACCAGGCGGCGGGAGCGACGCCCCGCAGCGGGAATCA
GCGGGGAACGGAAGCCGAGAACTGCGGAGAAGGCTCTCGGGGGTGCGGAG
GGGACGAGATGGAGGAAGGCCGGGGGCGGCGGCGGTGGCGACCCAGCGGC
GGCCCTTCCGAAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16560:1905..2219+

>mRNA_L-elsbetiae_contig16560.4443.1 ID=mRNA_L-elsbetiae_contig16560.4443.1|Name=mRNA_L-elsbetiae_contig16560.4443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig16560:1905..2219+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGAGACCTCCTCCGAGAGCTCCGCAAAGAGTGAGAGCCCCGCCGGAAG
TGGCAGCCCCGCAGGGACGACGGCGGCGGCGGTGGCGGCAGTGGCGGCAG
TTGTGGTAGAGACGGCATCGTCCGATCTTACCGACGGCAATGAGCGCGGC
TGCGGCGAGAGTGACCAGGCGGCGGGAGCGACGCCCCGCAGCGGGAATCA
GCGGGGAACGGAAGCCGAGAACTGCGGAGAAGGCTCTCGGGGGTGCGGAG
GGGACGAGATGGAGGAAGGCCGGGGGCGGCGGCGGTGGCGACCCAGCGGC
GGCCCTTCCGAAGCCGAGGAGACCTCCTCCGAGAGCTCCGCAAAGAGTGA
GAGCCCCGCCGGAAGTGGCAGCCCCGCAGGGACGACGGCGGCGGCGGTGG
CGGCAGTGGCGGCAGTTGTGGTAGAGACGGCATCGTCCGATCTTACCGAC
GGCAATGAGCGCGGCTGCGGCGAGAGTGACCAGGCGGCGGGAGCGACGCC
CCGCAGCGGGAATCAGCGGGGAACGGAAGCCGAGAACTGCGGAGAAGGCT
CTCGGGGGTGCGGAGGGGACGAGATGGAGGAAGGCCGGGGGCGGCGGCGG
TGGCGACCCAGCGGCGGCCCTTCCGAAGCC
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