mRNA_L-elsbetiae_contig16539.4431.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16539.4431.1
Unique NamemRNA_L-elsbetiae_contig16539.4431.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16539.4431.1 vs. uniprot
Match: A0A6H5K768_9PHAE (FPL domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K768_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.090e-40
Identity = 168/343 (48.98%), Postives = 181/343 (52.77%), Query Frame = 1 
Query:    1 QVALCALAQLFIVVTHPPLVRLLVLETLGSGDGAREPCPA-----------------------------------AERGAGSSAPLLALLQGDREELCLGALVVLQALAQNRVVRTDLGLAQGPDTDXXXXXXXFPAHDHEGL----TGATNAADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQA---STGSLGVQILDAAVDALCCMLAPSAA--AVRETTAXXXXATAAGQSAGPATVTVAGSGMERLEAXXXXXXXXXXXXXXXXXXXXENG---QGGEKVAAGAXXXAGAGRRGVRESGGAGAVPAPATPLCPRRPRRHHLVLRLCGKVLASL 888
            QVALCALAQLFIVVTHPPLVRLLVLETLGS +  +E  P                                    A  G G + PLLALLQGDREELCLGALVVLQALAQN+VVRTDLGL Q  DT          A  HEGL     G T AADG                 XXXXXXXXXXXXXXX  A   S   LG+++LDAAVDALCCMLAPS A  AVR            G+ AG +    AG     + A        XXXXXX      E G   +GG + AAG+            E G    VP P TP  PR PRRHHLVLRLCGKVLASL
Sbjct:  706 QVALCALAQLFIVVTHPPLVRLLVLETLGS-EATQELRPVGAVAXXXXXXXXXXXXXXXTAEVDNIGAAAGGEERAGSGVGRAPPLLALLQGDREELCLGALVVLQALAQNQVVRTDLGLTQ--DTAYNS------AQYHEGLPDAAAGGTGAADGQPNGGYAEEGGQQTAAPXXXXXXXXXXXXXXXXAAADLSARPLGMEMLDAAVDALCCMLAPSTATQAVR------------GEGAGESGEETAG-----VVAVGTAAGAKXXXXXXALESGGEGGVHPKGGREEAAGS------------ERGHESTVPVPPTPFLPR-PRRHHLVLRLCGKVLASL 1009
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BLAST of mRNA_L-elsbetiae_contig16539.4431.1 vs. uniprot
Match: D7FXA7_ECTSI (FPL domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA7_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.650e-28
Identity = 132/315 (41.90%), Postives = 142/315 (45.08%), Query Frame = 1 
Query:    1 QVALCALAQLFIVVTHPPLVRLLVLETLGSGDGAREPCPAAERGAGSSAPLLALLQGDREELCLGALVVLQALAQNRVVRTDLGLAQGPDTDXXXXXXXFPAHDHEGLTGA----TNAADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD----QASTGSLGVQILDAAVDALCCMLAPSAAAV-----------RETTAXXXXATAAGQSAGPATVTVAGSGMERLEAXXXXXXXXXXXXXXXXXXXXENGQGGEKVAAGAXXXAGAGRRGVRESGGAGAVPAPATPLCPRRPRRHHLVLRLCGKVLASL 888
            QVALCALAQLFIVVTHPPLVRLLVLETLGS                                        +ALAQN+VVRTDLGL Q    D         A DHEGL GA    T AADG                   XXXXXXXXXXXXX       S   LG+++LDAAVDALCCMLAPS A              ETT      TAAG   G  +  +   G   +                         +GG K AAG+            E G    VP P TP  PR PRRHHLVLRLCGKVLASL
Sbjct:  335 QVALCALAQLFIVVTHPPLVRLLVLETLGS----------------------------------------EALAQNQVVRTDLGLTQDAAEDS--------AQDHEGLPGAAAAGTGAADGQPNGGCAEEEKQQTAAGEGXXXXXXXXXXXXXPAPAVDPSARPLGMEMLDAAVDALCCMLAPSTATQAVGGEGAGESGEETTGVVAVGTAAGTKEGAPSSALGSGGGAGVHP-----------------------EGGRKEAAGS------------ERGHESTVPVPPTPFLPR-PRRHHLVLRLCGKVLASL 565
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16539.4431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K768_9PHAE1.090e-4048.98FPL domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FXA7_ECTSI1.650e-2841.90FPL domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16539contigL-elsbetiae_contig16539:1498..3111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue3.6e-27
Seed eggNOG ortholog2880.D7FXA7
KEGG koko:K19513
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.negative regulation of macroautophagy by TORC1 signaling
EggNOG OGsKOG2219@1,KOG2219@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04131
Exons2
Model size889
Cds size888
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815685.6198173-CDS-L-elsbetiae_contig16539:1498..21731622815685.6198173-CDS-L-elsbetiae_contig16539:1498..2173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16539 1499..2173 -
1691683037.0490234-CDS-L-elsbetiae_contig16539:1498..21731691683037.0490234-CDS-L-elsbetiae_contig16539:1498..2173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16539 1499..2173 -
1622815685.6301236-CDS-L-elsbetiae_contig16539:2898..31111622815685.6301236-CDS-L-elsbetiae_contig16539:2898..3111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16539 2899..3111 -
1691683037.0624847-CDS-L-elsbetiae_contig16539:2898..31111691683037.0624847-CDS-L-elsbetiae_contig16539:2898..3111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16539 2899..3111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16539.4431.1prot_L-elsbetiae_contig16539.4431.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16539 1499..3111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16539.4431.1

>prot_L-elsbetiae_contig16539.4431.1 ID=prot_L-elsbetiae_contig16539.4431.1|Name=mRNA_L-elsbetiae_contig16539.4431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=296bp
QVALCALAQLFIVVTHPPLVRLLVLETLGSGDGAREPCPAAERGAGSSAP
LLALLQGDREELCLGALVVLQALAQNRVVRTDLGLAQGPDTDGDGDGDGF
PAHDHEGLTGATNAADGGSSGGGGDAANQAEGSAAAAAAAAAAAAAAAAD
QASTGSLGVQILDAAVDALCCMLAPSAAAVRETTAAAAVATAAGQSAGPA
TVTVAGSGMERLEAAAAAADATASSETVGCSAALENGQGGEKVAAGAGAG
AGAGRRGVRESGGAGAVPAPATPLCPRRPRRHHLVLRLCGKVLASL
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mRNA from alignment at L-elsbetiae_contig16539:1498..3111-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16539.4431.1 ID=mRNA_L-elsbetiae_contig16539.4431.1|Name=mRNA_L-elsbetiae_contig16539.4431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1614bp|location=Sequence derived from alignment at L-elsbetiae_contig16539:1498..3111- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGCGCTGTGTGCCTTGGCGCAGCTCTTCATAGTCGTCACGCACCC
GCCCCTGGTACGCCTCCTGGTGCTAGAAACCCTTGGGAGCGGGGACGGGG
CTCGAGAGCCGTGCCCGGCAGCAGAGCGGGGGGCGGGGTCTTCCGCTCCC
CTGCTGGCGTTGCTGCAGGGCGACAGAGAGGAACTCTGCTTGGGGGCGCT
TGTGGTGTTGCAGGTATTTTACGTATGTAAGACGGTTTTAATTCAGTAGC
CTTCGTGAGTTTTACTGGAATAAATCATATGGGATACAAGTAGGAAACGG
GCTAATGGGGAGTCGGTTCGGGGTTACGGTTACGGCTACGGCTGCGGTTA
CGGAACCCCCGTGCAGTATTTCCTAAAGAGACAGGAATATCTGGCGAAGG
TGTTCCGCTGCTGTACAAGGTAAATAGGCACCGCCGTGTGCGCCTGCCTG
CTTCTTCTCTCGCTCTTGCTGAGGGGGAGGGCTCTGTCTGATGGTTCCCT
GGGGTCGGCTGTGTGCCAGAAGGGTTGTACATGGAGGCAGTGTGGGTCGG
TCCGTGTGTGTGTGTGTGTGTGTGTGAGTTTTCTACAGATGTACAACCCC
CCCTCCCAACGCCCCCCCCCCCCCCCCCCCCCCCCGCGCCGCCCCGCACC
CCCTGCCCCCCCAAACNNNNNNNNNNGGGCCCGAAGGGTTGGACGGGGGG
GGGGTGGGGGGGGGTCGGGGGGGGGGTGGGGGGGTGTGTGGGTTTTTTAC
AGATGTACACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTGCTGCA
AGTGGCGTGCGCTTATGTACACAGCAAGCAATAACAGTGTTTGATGGAAA
GACCGTCGGCCGCCTTTGCCTGAATCCGGAATCGCCTGCGGGTTTTCTGA
TCGCGATTGTTTTCAAAACGGCGTTGCGCGATCCTCAGGCTCTCGCGCAG
AACCGGGTGGTCAGAACGGACCTCGGGCTGGCGCAGGGTCCCGATACCGA
CGGCGACGGCGACGGCGACGGCTTCCCCGCCCACGACCACGAGGGGCTCA
CGGGTGCCACCAATGCGGCAGACGGCGGTTCAAGCGGCGGCGGCGGCGAC
GCAGCAAATCAAGCAGAAGGTTCAGCAGCAGCGGCGGCGGCAGCAGCGGC
AGCGGCAGCGGCAGCGGCAGCGGACCAGGCGTCTACGGGGTCCCTTGGCG
TGCAAATCCTGGACGCCGCGGTGGACGCTCTCTGCTGCATGCTCGCCCCG
TCGGCGGCGGCCGTGCGAGAAACGACGGCGGCAGCGGCGGTGGCAACAGC
GGCCGGTCAGAGTGCGGGCCCGGCGACGGTAACGGTCGCGGGGAGCGGGA
TGGAGAGGTTGGAGGCGGCGGCGGCGGCGGCCGACGCAACAGCCTCCTCC
GAAACGGTCGGTTGTTCCGCCGCCCTCGAGAACGGGCAGGGAGGCGAGAA
GGTGGCAGCAGGAGCAGGAGCAGGGGCAGGGGCAGGCCGACGAGGGGTGC
GCGAGAGCGGCGGTGCCGGTGCCGTCCCCGCTCCGGCGACGCCTCTTTGT
CCCCGGCGGCCCCGACGGCACCACCTCGTGCTTCGTCTCTGTGGCAAGGT
GCTGGCGAGCCTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16539:1498..3111-

>mRNA_L-elsbetiae_contig16539.4431.1 ID=mRNA_L-elsbetiae_contig16539.4431.1|Name=mRNA_L-elsbetiae_contig16539.4431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1776bp|location=Sequence derived from alignment at L-elsbetiae_contig16539:1498..3111- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGCGCTGTGTGCCTTGGCGCAGCTCTTCATAGTCGTCACGCACCC
GCCCCTGGTACGCCTCCTGGTGCTAGAAACCCTTGGGAGCGGGGACGGGG
CTCGAGAGCCGTGCCCGGCAGCAGAGCGGGGGGCGGGGTCTTCCGCTCCC
CTGCTGGCGTTGCTGCAGGGCGACAGAGAGGAACTCTGCTTGGGGGCGCT
TGTGGTGTTGCAGCAGGTGGCGCTGTGTGCCTTGGCGCAGCTCTTCATAG
TCGTCACGCACCCGCCCCTGGTACGCCTCCTGGTGCTAGAAACCCTTGGG
AGCGGGGACGGGGCTCGAGAGCCGTGCCCGGCAGCAGAGCGGGGGGCGGG
GTCTTCCGCTCCCCTGCTGGCGTTGCTGCAGGGCGACAGAGAGGAACTCT
GCTTGGGGGCGCTTGTGGTGTTGCAGGCTCTCGCGCAGAACCGGGTGGTC
AGAACGGACCTCGGGCTGGCGCAGGGTCCCGATACCGACGGCGACGGCGA
CGGCGACGGCTTCCCCGCCCACGACCACGAGGGGCTCACGGGTGCCACCA
ATGCGGCAGACGGCGGTTCAAGCGGCGGCGGCGGCGACGCAGCAAATCAA
GCAGAAGGTTCAGCAGCAGCGGCGGCGGCAGCAGCGGCAGCGGCAGCGGC
AGCGGCAGCGGACCAGGCGTCTACGGGGTCCCTTGGCGTGCAAATCCTGG
ACGCCGCGGTGGACGCTCTCTGCTGCATGCTCGCCCCGTCGGCGGCGGCC
GTGCGAGAAACGACGGCGGCAGCGGCGGTGGCAACAGCGGCCGGTCAGAG
TGCGGGCCCGGCGACGGTAACGGTCGCGGGGAGCGGGATGGAGAGGTTGG
AGGCGGCGGCGGCGGCGGCCGACGCAACAGCCTCCTCCGAAACGGTCGGT
TGTTCCGCCGCCCTCGAGAACGGGCAGGGAGGCGAGAAGGTGGCAGCAGG
AGCAGGAGCAGGGGCAGGGGCAGGCCGACGAGGGGTGCGCGAGAGCGGCG
GTGCCGGTGCCGTCCCCGCTCCGGCGACGCCTCTTTGTCCCCGGCGGCCC
CGACGGCACCACCTCGTGCTTCGTCTCTGTGGCAAGGTGCTGGCGAGCCT
CGCTCTCGCGCAGAACCGGGTGGTCAGAACGGACCTCGGGCTGGCGCAGG
GTCCCGATACCGACGGCGACGGCGACGGCGACGGCTTCCCCGCCCACGAC
CACGAGGGGCTCACGGGTGCCACCAATGCGGCAGACGGCGGTTCAAGCGG
CGGCGGCGGCGACGCAGCAAATCAAGCAGAAGGTTCAGCAGCAGCGGCGG
CGGCAGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGACCAGGCGTCTACG
GGGTCCCTTGGCGTGCAAATCCTGGACGCCGCGGTGGACGCTCTCTGCTG
CATGCTCGCCCCGTCGGCGGCGGCCGTGCGAGAAACGACGGCGGCAGCGG
CGGTGGCAACAGCGGCCGGTCAGAGTGCGGGCCCGGCGACGGTAACGGTC
GCGGGGAGCGGGATGGAGAGGTTGGAGGCGGCGGCGGCGGCGGCCGACGC
AACAGCCTCCTCCGAAACGGTCGGTTGTTCCGCCGCCCTCGAGAACGGGC
AGGGAGGCGAGAAGGTGGCAGCAGGAGCAGGAGCAGGGGCAGGGGCAGGC
CGACGAGGGGTGCGCGAGAGCGGCGGTGCCGGTGCCGTCCCCGCTCCGGC
GACGCCTCTTTGTCCCCGGCGGCCCCGACGGCACCACCTCGTGCTTCGTC
TCTGTGGCAAGGTGCTGGCGAGCCTC
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