mRNA_L-elsbetiae_contig16537.4430.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16537.4430.1
Unique NamemRNA_L-elsbetiae_contig16537.4430.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig16537.4430.1 vs. uniprot
Match: D7FPB9_ECTSI (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPB9_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 7.510e-42
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    4 QVEGRKRWRVYPPADDGAALPRLSSPNLTDDQVGEPALEVVLEPGDLLYFPRGWAHQAETVGDEASLHITVSAMQGN 234
            QVEGRKRWRVYPP DD A LPRLSSPNLTD+QVGEPALEVVLEPGDLLY PRGWAHQAETVGDEASLHITVSAMQGN
Sbjct:  357 QVEGRKRWRVYPPTDDQAVLPRLSSPNLTDEQVGEPALEVVLEPGDLLYLPRGWAHQAETVGDEASLHITVSAMQGN 433
[Close]
BLAST of mRNA_L-elsbetiae_contig16537.4430.1 vs. uniprot
Match: A0A1B6J5X3_9HEMI (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Homalodisca TaxID=139475 RepID=A0A1B6J5X3_9HEMI)

HSP 1 Score: 110 bits (274), Expect = 2.650e-26
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    4 QVEGRKRWRVYPPADDGAALPRLSSPNLTDDQVGEPALEVVLEPGDLLYFPRGWAHQAETVGDEASLHITVSAMQ 228
            Q+EG+K W+VYPP +D   LPR SSPN + +++GEP L+V LEPGDLLYFPRG+ HQA TV  E SLHIT+SA Q
Sbjct:  431 QIEGKKHWKVYPPRNDKEVLPRFSSPNFSQEEIGEPILDVTLEPGDLLYFPRGFIHQASTVEGEHSLHITLSAYQ 505
[Close]
BLAST of mRNA_L-elsbetiae_contig16537.4430.1 vs. uniprot
Match: A0A8B7NU96_HYAAZ (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NU96_HYAAZ)

HSP 1 Score: 108 bits (271), Expect = 6.690e-26
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    4 QVEGRKRWRVYPPADDGAALPRLSSPNLTDDQVGEPALEVVLEPGDLLYFPRGWAHQAETVGDEASLHITVSAMQGN 234
            Q+EG+KRWRVY P      LPR SSPNLT +++GEP ++VVLEPGD LYFPRG+ HQAE V D  SLHIT+S  Q N
Sbjct:  375 QLEGKKRWRVYNPRSAEEVLPRYSSPNLTQEEIGEPIIDVVLEPGDTLYFPRGYIHQAEAVSDTYSLHITISMYQKN 451
[Close]
BLAST of mRNA_L-elsbetiae_contig16537.4430.1 vs. uniprot
Match: A0A1B6GDQ5_9HEMI (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6GDQ5_9HEMI)

HSP 1 Score: 108 bits (271), Expect = 6.730e-26
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    4 QVEGRKRWRVYPPADDGAALPRLSSPNLTDDQVGEPALEVVLEPGDLLYFPRGWAHQAETVGDEASLHITVSAMQ 228
            Q+EG+K W+VYPP ++   LPR SSPN + +++GEP L+V LEPGDLLYFPRG+ HQA TV  E SLHIT+SA Q
Sbjct:  423 QIEGKKHWKVYPPRNEQETLPRFSSPNFSQEEIGEPILDVTLEPGDLLYFPRGYIHQASTVEGEHSLHITLSAYQ 497
[Close]
BLAST of mRNA_L-elsbetiae_contig16537.4430.1 vs. uniprot
Match: A0A210Q472_MIZYE (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210Q472_MIZYE)

HSP 1 Score: 108 bits (269), Expect = 1.260e-25
Identity = 51/77 (66.23%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    4 QVEGRKRWRVYPPADDGAALPRLSSPNLTDDQVGEPALEVVLEPGDLLYFPRGWAHQAETVGDEASLHITVSAMQGN 234
            Q+EG+K WR+Y P  D   LPR SS N TD  +GEP LE  LEPGDLLYFPRG  HQA+TVGDE SLHITVS  Q N
Sbjct:  428 QLEGKKHWRLYSPRSDAEKLPRFSSGNFTDVDLGEPILEKTLEPGDLLYFPRGTIHQAKTVGDEHSLHITVSCYQKN 504
[Close]
BLAST of mRNA_L-elsbetiae_contig16537.4430.1 vs. uniprot
Match: A0A091FKL3_9AVES (Bifunctional lysine-specific demethylase and histidyl-hydroxylase (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A091FKL3_9AVES)

HSP 1 Score: 105 bits (263), Expect = 1.580e-25
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    4 QVEGRKRWRVYPPADDGAALPRLSSPNLTDDQVGEPALEVVLEPGDLLYFPRGWAHQAETVGDEASLHITVSAMQGN 234
            Q+EG+K WRVY P  D   LPR SSPN T  ++GEP LE VLEPGDLLYFPRG+ HQ + + D  SLHITVS+ Q N
Sbjct:   70 QLEGKKHWRVYGPRSDAEVLPRFSSPNFTQAELGEPVLETVLEPGDLLYFPRGFIHQGDCLPDAHSLHITVSSYQRN 146
[Close]
BLAST of mRNA_L-elsbetiae_contig16537.4430.1 vs. uniprot
Match: A0A7I8W477_9ANNE (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W477_9ANNE)

HSP 1 Score: 107 bits (267), Expect = 2.320e-25
Identity = 49/77 (63.64%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    4 QVEGRKRWRVYPPADDGAALPRLSSPNLTDDQVGEPALEVVLEPGDLLYFPRGWAHQAETVGDEASLHITVSAMQGN 234
            Q+EG+KRWR+Y P  D   LPR SS N TD  +GEP L+V+LE GDLLYFPRG  HQ  TV  E SLHITVS+MQ N
Sbjct:  384 QLEGKKRWRLYSPRSDNETLPRFSSGNFTDKDIGEPTLDVILEAGDLLYFPRGTIHQGNTVNGEHSLHITVSSMQRN 460
[Close]
BLAST of mRNA_L-elsbetiae_contig16537.4430.1 vs. uniprot
Match: A0A835Z731_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z731_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.080e-25
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:    4 QVEGRKRWRVYPPADDGAALPRLSSPNLTDDQV---GEPALEVVLEPGDLLYFPRGWAHQAETV-GDEASLHITVSAMQGN 234
            Q+EG KRW+VY PA    +LPR SS NLT +QV   GEP ++ VLEPGDLLYFPRGW HQA TV G  ASLH+TVS  QGN
Sbjct:  316 QIEGSKRWKVYAPAGAETSLPRTSSENLTPEQVQELGEPVIDAVLEPGDLLYFPRGWVHQAVTVAGGPASLHLTVSCYQGN 396
[Close]
BLAST of mRNA_L-elsbetiae_contig16537.4430.1 vs. uniprot
Match: A0A091ME21_9PASS (Bifunctional lysine-specific demethylase and histidyl-hydroxylase (Fragment) n=5 Tax=Neognathae TaxID=8825 RepID=A0A091ME21_9PASS)

HSP 1 Score: 104 bits (259), Expect = 3.990e-25
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    4 QVEGRKRWRVYPPADDGAALPRLSSPNLTDDQVGEPALEVVLEPGDLLYFPRGWAHQAETVGDEASLHITVSAMQGN 234
            Q+EG+K WRVY P  D   LPR SSPNLT  ++GEP LE VLE GDLLYFPRG+ HQ + + D  SLHITVS+ Q N
Sbjct:   41 QLEGKKHWRVYSPRTDAEVLPRFSSPNLTQAELGEPVLETVLEAGDLLYFPRGFIHQGDCLPDAHSLHITVSSYQRN 117
[Close]
BLAST of mRNA_L-elsbetiae_contig16537.4430.1 vs. uniprot
Match: UPI001458F7A4 (ribosomal oxygenase 1-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458F7A4)

HSP 1 Score: 106 bits (265), Expect = 4.380e-25
Identity = 50/77 (64.94%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    4 QVEGRKRWRVYPPADDGAALPRLSSPNLTDDQVGEPALEVVLEPGDLLYFPRGWAHQAETVGDEASLHITVSAMQGN 234
            Q+EG+K WR+Y P  D   LPR SS N  +  VGEP LE  LEPGDLLYFPRG  HQA+TVGDE SLHITVS  Q N
Sbjct:  429 QLEGKKHWRLYSPRSDAEKLPRFSSGNFNETDVGEPILEKTLEPGDLLYFPRGTIHQAKTVGDEHSLHITVSCYQKN 505
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16537.4430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPB9_ECTSI7.510e-4293.51Bifunctional lysine-specific demethylase and histi... [more]
A0A1B6J5X3_9HEMI2.650e-2664.00Bifunctional lysine-specific demethylase and histi... [more]
A0A8B7NU96_HYAAZ6.690e-2663.64Bifunctional lysine-specific demethylase and histi... [more]
A0A1B6GDQ5_9HEMI6.730e-2662.67Bifunctional lysine-specific demethylase and histi... [more]
A0A210Q472_MIZYE1.260e-2566.23Bifunctional lysine-specific demethylase and histi... [more]
A0A091FKL3_9AVES1.580e-2562.34Bifunctional lysine-specific demethylase and histi... [more]
A0A7I8W477_9ANNE2.320e-2563.64Bifunctional lysine-specific demethylase and histi... [more]
A0A835Z731_9STRA3.080e-2565.43Bifunctional lysine-specific demethylase and histi... [more]
A0A091ME21_9PASS3.990e-2562.34Bifunctional lysine-specific demethylase and histi... [more]
UPI001458F7A44.380e-2564.94ribosomal oxygenase 1-like n=1 Tax=Pecten maximus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16537contigL-elsbetiae_contig16537:2710..3321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue3.7e-35
Seed eggNOG ortholog2880.D7FPB9
Preferred nameC14orf169
KEGG koko:K16914
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006325,GO:0006338,GO:0006355,GO:0006464,GO:0006482,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0008214,GO:0009266,GO:0009408,GO:0009628,GO:0009636,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016491,GO:0016569,GO:0016570,GO:0016577,GO:0016705,GO:0016706,GO:0018193,GO:0018195,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030278,GO:0030279,GO:0030961,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032451,GO:0032452,GO:0032453,GO:0034720,GO:0036211,GO:0042221,GO:0042254,GO:0042493,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045471,GO:0045595,GO:0045596,GO:0045667,GO:0045668,GO:0045892,GO:0045934,GO:0046677,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051213,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0051276,GO:0051864,GO:0055114,GO:0060255,GO:0065007,GO:0070013,GO:0070076,GO:0070544,GO:0070988,GO:0071704,GO:0071840,GO:0080090,GO:0097305,GO:0140096,GO:1901564,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.histone demethylase activity (H3-K4 specific)
EggNOG OGsKOG3706@1,KOG3706@2759
EC1.14.11.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03036
Exons2
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815685.5628152-CDS-L-elsbetiae_contig16537:2709..27911622815685.5628152-CDS-L-elsbetiae_contig16537:2709..2791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16537 2710..2791 -
1691683037.0156589-CDS-L-elsbetiae_contig16537:2709..27911691683037.0156589-CDS-L-elsbetiae_contig16537:2709..2791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16537 2710..2791 -
1622815685.5774448-CDS-L-elsbetiae_contig16537:3163..33211622815685.5774448-CDS-L-elsbetiae_contig16537:3163..3321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16537 3164..3321 -
1691683037.0291743-CDS-L-elsbetiae_contig16537:3163..33211691683037.0291743-CDS-L-elsbetiae_contig16537:3163..3321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16537 3164..3321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16537.4430.1prot_L-elsbetiae_contig16537.4430.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16537 2710..3321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16537.4430.1

>prot_L-elsbetiae_contig16537.4430.1 ID=prot_L-elsbetiae_contig16537.4430.1|Name=mRNA_L-elsbetiae_contig16537.4430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
KQVEGRKRWRVYPPADDGAALPRLSSPNLTDDQVGEPALEVVLEPGDLLY
FPRGWAHQAETVGDEASLHITVSAMQGNW*
back to top

mRNA from alignment at L-elsbetiae_contig16537:2710..3321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16537.4430.1 ID=mRNA_L-elsbetiae_contig16537.4430.1|Name=mRNA_L-elsbetiae_contig16537.4430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig16537:2710..3321- (Laminarionema elsbetiae ELsaHSoW15)
AAACAGGTGGAGGGCCGGAAGCGCTGGAGGGTGTACCCCCCCGCGGACGA
CGGCGCCGCCCTGCCAAGGCTTTCGTCACCCAACCTCACAGACGACCAAG
TCGGGGAGCCGGCGCTGGAGGTGGTGCTGGAGCCCGGTGACCTGCTCTAT
TTCCCAAGGTGAGGGCAAGGTGCGTCCTGGGTTGCAGACTTGGCACCACG
CTCCCCCCCCCCTCGATTCTGGGCTTATTGATCGGAGTATTTTTTTTCTT
ATGTACGAAGTAGTACTCTAGAAGTTAGTTGGGGGACCCCCCGTCAGGAT
ACCCCCCCTCTCCCCCCCCCCCGCGGAAATGATGTCAATGTACCAAAGTT
GGACCACAAATGCGACATAAATCCTGATCAGTCTATAGGTTAGACTCATG
AAGTATAATGATGATGGTAAATGATGACGATGAGGGTGACGTCGATGATG
ACGATGGTGATGAAGAGGATAATGATGATGATGATGATGATGATGGTGAT
GGTGATGGTGATGATTGGCGATGATGACAGGGGGTGGGCGCACCAGGCCG
AGACCGTCGGAGACGAGGCTTCCCTTCACATCACAGTGTCGGCCATGCAG
GGCAACTGGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16537:2710..3321-

>mRNA_L-elsbetiae_contig16537.4430.1 ID=mRNA_L-elsbetiae_contig16537.4430.1|Name=mRNA_L-elsbetiae_contig16537.4430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig16537:2710..3321- (Laminarionema elsbetiae ELsaHSoW15)
AAACAGGTGGAGGGCCGGAAGCGCTGGAGGGTGTACCCCCCCGCGGACGA
CGGCGCCGCCCTGCCAAGGCTTTCGTCACCCAACCTCACAGACGACCAAG
TCGGGGAGCCGGCGCTGGAGGTGGTGCTGGAGCCCGGTGACCTGCTCTAT
TTCCCAAGAAACAGGTGGAGGGCCGGAAGCGCTGGAGGGTGTACCCCCCC
GCGGACGACGGCGCCGCCCTGCCAAGGCTTTCGTCACCCAACCTCACAGA
CGACCAAGTCGGGGAGCCGGCGCTGGAGGTGGTGCTGGAGCCCGGTGACC
TGCTCTATTTCCCAAGGGGGTGGGCGCACCAGGCCGAGACCGTCGGAGAC
GAGGCTTCCCTTCACATCACAGTGTCGGCCATGCAGGGCAACTGGTGAGG
GGTGGGCGCACCAGGCCGAGACCGTCGGAGACGAGGCTTCCCTTCACATC
ACAGTGTCGGCCATGCAGGGCAACTGGTGA
back to top